BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141923.1 + phase: 0 /pseudo
(83 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC80398 similar to GP|20521392|dbj|BAB91903. putative FtsH prote... 49 1e-14
TC82278 weakly similar to GP|20197264|gb|AAC31223.2 FtsH proteas... 59 4e-10
TC77007 similar to PIR|T10804|T10804 tonoplast intrinsic protein... 25 5.3
BF632518 25 7.0
TC86035 similar to PIR|E71435|E71435 probable triacylglycerol li... 25 7.0
TC78592 similar to GP|9802755|gb|AAF99824.1| Unknown protein {Ar... 25 7.0
TC79372 homologue to GP|2281647|gb|AAC49777.1| AP2 domain contai... 24 9.1
TC78291 weakly similar to PIR|A84793|A84793 nodulin-like protein... 24 9.1
TC80338 weakly similar to GP|20127018|gb|AAM10936.1 putative bHL... 24 9.1
>TC80398 similar to GP|20521392|dbj|BAB91903. putative FtsH protease {Oryza
sativa (japonica cultivar-group)}, partial (26%)
Length = 981
Score = 49.3 bits (116), Expect(2) = 1e-14
Identities = 27/39 (69%), Positives = 30/39 (76%)
Frame = +1
Query: 44 YVRRNAAKC*DKY*T*RCERCRRGKS*T*RNC*LPKRS* 82
Y R+AA+C D+Y* * CERCR GK T*RNC LPKRS*
Sbjct: 784 YE*RSAAQCRDQY*I**CERCR*GKGGT*RNCSLPKRS* 900
Score = 44.3 bits (103), Expect(2) = 1e-14
Identities = 22/32 (68%), Positives = 25/32 (77%)
Frame = +2
Query: 1 MVAALEGGNFKEQQWHTIWFIAAAFLLISCVG 32
MVAA EGG+FKEQ W TI +A AFL+IS VG
Sbjct: 650 MVAASEGGSFKEQIWRTIRSVAVAFLVISGVG 745
>TC82278 weakly similar to GP|20197264|gb|AAC31223.2 FtsH protease putative
{Arabidopsis thaliana}, partial (14%)
Length = 698
Score = 58.5 bits (140), Expect = 4e-10
Identities = 31/38 (81%), Positives = 34/38 (88%)
Frame = +1
Query: 45 VRRNAAKC*DKY*T*RCERCRRGKS*T*RNC*LPKRS* 82
+RR+AA+ DKY*T*R ERCRRGK *T*RNC*LPKRS*
Sbjct: 571 IRRSAAQSRDKY*T*RYERCRRGKG*T*RNC*LPKRS* 684
>TC77007 similar to PIR|T10804|T10804 tonoplast intrinsic protein delta
type - upland cotton, complete
Length = 1041
Score = 25.0 bits (53), Expect = 5.3
Identities = 9/26 (34%), Positives = 17/26 (64%)
Frame = -3
Query: 25 FLLISCVGTSCIKESEKHIYVRRNAA 50
FL ISC G +C+ +++ + Y N++
Sbjct: 574 FLWISCCGINCVYQTKCYDYFSNNSS 497
>BF632518
Length = 597
Score = 24.6 bits (52), Expect = 7.0
Identities = 7/18 (38%), Positives = 11/18 (60%)
Frame = -1
Query: 18 IWFIAAAFLLISCVGTSC 35
+WF+ F ++CVG C
Sbjct: 204 LWFLVC*FFCVTCVGFQC 151
>TC86035 similar to PIR|E71435|E71435 probable triacylglycerol lipase -
Arabidopsis thaliana, partial (57%)
Length = 1783
Score = 24.6 bits (52), Expect = 7.0
Identities = 19/72 (26%), Positives = 31/72 (42%), Gaps = 10/72 (13%)
Frame = -1
Query: 6 EGGNFKEQQWH---------TIWFI-AAAFLLISCVGTSCIKESEKHIYVRRNAAKC*DK 55
EG E++WH +W + A L ++C+ +C+ E+ +VRR
Sbjct: 226 EGCCLMEEEWHLKLGHLSA*NLWRL*AGKVLELNCIMMNCLIENN*RNFVRR-------- 71
Query: 56 Y*T*RCERCRRG 67
*R C+RG
Sbjct: 70 ---*RQRPCKRG 44
>TC78592 similar to GP|9802755|gb|AAF99824.1| Unknown protein {Arabidopsis
thaliana}, partial (8%)
Length = 1909
Score = 24.6 bits (52), Expect = 7.0
Identities = 7/18 (38%), Positives = 11/18 (60%)
Frame = -2
Query: 18 IWFIAAAFLLISCVGTSC 35
+WF+ F ++CVG C
Sbjct: 195 LWFLVC*FFCVTCVGFQC 142
>TC79372 homologue to GP|2281647|gb|AAC49777.1| AP2 domain containing
protein RAP2.11 {Arabidopsis thaliana}, partial (27%)
Length = 1086
Score = 24.3 bits (51), Expect = 9.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 25 FLLISCVGTSCIKESEKHIYV 45
F++ SC SC K S+ H YV
Sbjct: 146 FIISSCCFLSCFKCSKPHSYV 84
>TC78291 weakly similar to PIR|A84793|A84793 nodulin-like protein [imported]
- Arabidopsis thaliana, partial (54%)
Length = 1466
Score = 24.3 bits (51), Expect = 9.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 19 WFIAAAFLLISCVGTS 34
W + A FLLI C G S
Sbjct: 658 WLLGALFLLIGCAGFS 705
>TC80338 weakly similar to GP|20127018|gb|AAM10936.1 putative bHLH
transcription factor {Arabidopsis thaliana}, partial
(15%)
Length = 1128
Score = 24.3 bits (51), Expect = 9.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 9 NFKEQQWHTIWFIAAAFLLI 28
N+K QQ H +WF F +I
Sbjct: 998 NYKYQQRHALWFALQQFNII 939
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.368 0.161 0.647
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,917,189
Number of Sequences: 36976
Number of extensions: 38384
Number of successful extensions: 704
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of query: 83
length of database: 9,014,727
effective HSP length: 59
effective length of query: 24
effective length of database: 6,833,143
effective search space: 163995432
effective search space used: 163995432
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 51 (24.3 bits)
Medicago: description of AC141923.1