BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141863.3 - phase: 0
(773 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC87958 weakly similar to GP|20279447|gb|AAM18727.1 putative TNP... 249 2e-66
AI974280 weakly similar to GP|20279447|g putative TNP2-like tran... 123 2e-28
AW257182 weakly similar to GP|20279447|g putative TNP2-like tran... 100 4e-21
BG586318 similar to GP|6069576|dbj| transposon-like ORF {Brassic... 83 3e-16
TC82803 similar to PIR|D85049|D85049 probable transposon protein... 57 3e-11
BQ752332 weakly similar to GP|8778366|gb| F15O4.30 {Arabidopsis ... 59 5e-09
BF631908 weakly similar to GP|21450441|gb| putative transposon p... 55 8e-08
TC90382 similar to GP|20161447|dbj|BAB90371. hypothetical protei... 35 0.083
TC86145 homologue to GP|10334499|emb|CAC10211. hypothetical prot... 32 0.71
TC86146 homologue to GP|10334499|emb|CAC10211. hypothetical prot... 32 0.71
TC82397 similar to GP|18377877|gb|AAL67124.1 AT3g53630/F4P12_330... 32 0.92
TC87237 similar to GP|160409|gb|AAA29651.1|| mature-parasite-inf... 32 1.2
TC89319 similar to PIR|T02350|T02350 hypothetical protein T8F5.5... 32 1.2
BQ155246 32 1.2
TC92189 weakly similar to GP|21536818|gb|AAM61150.1 F-box protei... 32 1.2
TC77438 homologue to PIR|T06807|T06807 nucleosome assembly prote... 31 1.6
BG457701 similar to GP|8778275|gb|A F14D16.10 {Arabidopsis thali... 31 2.1
TC82581 similar to GP|6729042|gb|AAF27038.1| unknown protein {Ar... 31 2.1
AW690594 similar to GP|23498163|emb hypothetical protein {Plasmo... 31 2.1
BE205031 similar to GP|23498246|em hypothetical protein {Plasmod... 30 2.7
>TC87958 weakly similar to GP|20279447|gb|AAM18727.1 putative TNP2-like
transposon protein {Oryza sativa (japonica
cultivar-group)}, partial (10%)
Length = 2433
Score = 249 bits (637), Expect = 2e-66
Identities = 186/593 (31%), Positives = 293/593 (49%), Gaps = 25/593 (4%)
Frame = +1
Query: 179 DLPYWKDNLLRHNLDVMHIEKNVFDNIFNTVMDVKGKTKDNEKARKDLQIYCKRKDLELK 238
+LPYW N L HNLDVMHIEKN+FDNI T++D+ GKTKD+ + R DL+ RK+L +
Sbjct: 1 ELPYWASNTLHHNLDVMHIEKNIFDNIIGTLLDIPGKTKDHVRGRYDLEEMGIRKNLHPR 180
Query: 239 PQPNGKLLKPKANYNLSAQEAKLVCQWLKDLRMPDGYSSNIGRCADVNTGRLHGMKSHDS 298
G++ + ++++++E + C LK ++PDG +SNI RC V+ ++ G KSHD+
Sbjct: 181 DVGGGRVAIANSCFSMTSEEKSMFCGVLKGAKLPDGSASNISRCVKVSEKKICGYKSHDA 360
Query: 299 HIFMENFIPIAF-SSLPKHVLDPLIEISQFFKNLCASTLRVDELEKME-KNMPIIICQLE 356
H + + I S++PK V PLI +S+FF++LC ++ +N +
Sbjct: 361 HFMLHYLLQIPIRSTMPKAVAQPLIRLSRFFRSLCQKGYPNP*SGQLTGRNC*STLFN*R 540
Query: 357 QIFPPGF----FDSMEHLPVHLAYEAILGGPVQYRWMYPFERFMGDSKRAVKNLAKVEGS 412
F F F + + L + A +RWMYP ER++ K V+N ++ EGS
Sbjct: 541 WFFLLVFLMLWFT*LFIFRMRLDWVA----QFNFRWMYPVERYLCKLKGYVRNRSRPEGS 708
Query: 413 IVAIYTAKETTYFIGHYFVDRLLTPSNTRNE-VQVNDLRDPSTLSVFNLDGRHAG--KVL 469
I Y A+E Y + T SN +N+ +DL + + F+ GR G K
Sbjct: 709 IAEGYVAEEGITICSRYMHKGVDTRSNRKNQNYDDSDLLEVDEIDYFSSIGRPLGGKKNG 888
Query: 470 QYWMVDQKEMRSAHVHVLINCAEVKPYLEE---FIAFYAEFGEGSTVGSIHEYFPAWFKQ 526
+ + +D + AH ++L NC E++ Y+ E + + + + + F WFK
Sbjct: 889 KPFYLDFDSLAQAHRYLLFNCGEIEVYIREHEGIVNSHTKKRKWDKAKAQCLNFSDWFKT 1068
Query: 527 RVYNAEPTDEVIRLRQLSQGPLQCANEFHTYFVNGYKFHTHSWTEGKKTINSGVYVKGVT 586
R A+ D +LR+ S+GP A F Y VNGY+FHT +KT NSGV + +T
Sbjct: 1069R---AKRDDVPPQLREFSRGPNNVAKRFSGYLVNGYRFHTMQ*DARRKTQNSGVTLVSLT 1239
Query: 587 ---DGGEDD--------FYGVIKHIYELSYNDN-KVVLFYCDWFDPSPRWTKINKLCNTV 634
+D+ FYG I I EL+Y + K VLF CDW++ + C
Sbjct: 1240ASFASSKDENPRTEPVNFYGAINDIIELNYYGHCKFVLFRCDWYEVEE--DEYGLTC--- 1404
Query: 635 DIRVDKKYKEYDPFIMAHNVRQVYYVPYPPTLPRKRGWSVAIKTKPRGRIETEERNEEVA 694
+ +KK + D F++A V+Q +YV P + R A+KT PR + ++E
Sbjct: 1405-VYFNKKCYQDDAFVIASQVQQCFYVQDPLNVNR----HYALKTDPRDLFKMGNQSE--- 1560
Query: 695 YQADDMTHVNEIIEVDQVTSWQDSQVEGDQVD-PSILEMRNEVEDENEDVVDD 746
++A + +EI +W + ++ PS + E EDE+ DD
Sbjct: 1561FEATSVNAADEI-------NWGREDIPRTIIEKPSNILQ*IEEEDEDYSDFDD 1698
>AI974280 weakly similar to GP|20279447|g putative TNP2-like transposon
protein {Oryza sativa (japonica cultivar-group)},
partial (8%)
Length = 457
Score = 123 bits (309), Expect = 2e-28
Identities = 63/128 (49%), Positives = 82/128 (63%), Gaps = 1/128 (0%)
Frame = +1
Query: 10 LSCIVPGPDNPKAGIDVFLQPLIDDLKRLWV-GELTYDISRKQNFKLRAALMWTINDFPA 68
LS ++PGP +PK IDV+L+PLID+LK LW G YD S KQ F+ AAL+WTI+D PA
Sbjct: 16 LSLLIPGPSSPKRNIDVYLEPLIDELKELWERGFEVYDASSKQLFEAHAALLWTISDLPA 195
Query: 69 YGMLSGWSTHGRFACPHCMENTKAFTLESGGKSSWFDCHRPFLPHNHPFRRLKNGFKKDE 128
Y MLSGWST G+ ACP C +T + L+ K+ + HR FL H +R+ K GF +
Sbjct: 196 YTMLSGWSTSGKLACPVCSYDTCSMYLKHSRKTCYMS-HRRFLDPKHRWRKDKKGFDGKK 372
Query: 129 RVFVGPPP 136
+ V P P
Sbjct: 373 EIRVAPFP 396
>AW257182 weakly similar to GP|20279447|g putative TNP2-like transposon
protein {Oryza sativa (japonica cultivar-group)},
partial (6%)
Length = 387
Score = 99.8 bits (247), Expect = 4e-21
Identities = 49/94 (52%), Positives = 63/94 (66%), Gaps = 1/94 (1%)
Frame = +1
Query: 32 IDDLKRLWV-GELTYDISRKQNFKLRAALMWTINDFPAYGMLSGWSTHGRFACPHCMENT 90
I++LK LW G TYD S+ Q F++RAAL+WTI+DFPAY MLSGWST G+ ACP C NT
Sbjct: 7 IEELKVLWESGVETYDASKNQMFRMRAALLWTISDFPAYAMLSGWSTKGKLACPCCNNNT 186
Query: 91 KAFTLESGGKSSWFDCHRPFLPHNHPFRRLKNGF 124
+ L+ K + D HR FLP +H +R + F
Sbjct: 187 SSTYLKHSRKMCYMD-HRTFLPMDHAWRENRKSF 285
>BG586318 similar to GP|6069576|dbj| transposon-like ORF {Brassica rapa},
partial (11%)
Length = 267
Score = 83.2 bits (204), Expect = 3e-16
Identities = 42/86 (48%), Positives = 56/86 (64%)
Frame = +3
Query: 183 WKDNLLRHNLDVMHIEKNVFDNIFNTVMDVKGKTKDNEKARKDLQIYCKRKDLELKPQPN 242
W+D+LLRHNLDVMHIEKN FDN+ NT+++V+GKTKDN K+R DL C R +L + N
Sbjct: 3 WEDHLLRHNLDVMHIEKNFFDNLMNTILNVQGKTKDNLKSRLDLVDICARSELHV--DEN 176
Query: 243 GKLLKPKANYNLSAQEAKLVCQWLKD 268
G+ P Y L A + W+ +
Sbjct: 177 GR--APFPIYRLDAGGKDALFDWISN 248
>TC82803 similar to PIR|D85049|D85049 probable transposon protein [imported]
- Arabidopsis thaliana, partial (5%)
Length = 755
Score = 57.0 bits (136), Expect(2) = 3e-11
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +3
Query: 364 FDSMEHLPVHLAYEAILGGPVQYRWMYPFERFM 396
FDSMEHL +HLAYEA +G PVQYR MYPFER +
Sbjct: 288 FDSMEHLSIHLAYEARVGNPVQYR*MYPFERLI 386
Score = 29.6 bits (65), Expect(2) = 3e-11
Identities = 12/18 (66%), Positives = 15/18 (82%)
Frame = +1
Query: 346 KNMPIIICQLEQIFPPGF 363
+N+ II+C LEQIFPP F
Sbjct: 235 ENIAIIMC*LEQIFPPSF 288
>BQ752332 weakly similar to GP|8778366|gb| F15O4.30 {Arabidopsis thaliana},
partial (6%)
Length = 268
Score = 59.3 bits (142), Expect = 5e-09
Identities = 30/89 (33%), Positives = 45/89 (49%), Gaps = 3/89 (3%)
Frame = -2
Query: 592 DFYGVIKHIYELSYNDN---KVVLFYCDWFDPSPRWTKINKLCNTVDIRVDKKYKEYDPF 648
DFYG++ I E+ + K VLF C+WFDP + VD+ ++Y +++PF
Sbjct: 267 DFYGILTEIIEVEFPGILKLKCVLFKCEWFDPVVNRGVRSIKFGVVDVNGGRRYNKFEPF 88
Query: 649 IMAHNVRQVYYVPYPPTLPRKRGWSVAIK 677
I+A QV ++PYP W IK
Sbjct: 87 ILASQADQVSFLPYPRMRDSGINWLAVIK 1
>BF631908 weakly similar to GP|21450441|gb| putative transposon protein
5'-partial {Oryza sativa (japonica cultivar-group)},
partial (17%)
Length = 681
Score = 55.5 bits (132), Expect = 8e-08
Identities = 51/169 (30%), Positives = 72/169 (42%), Gaps = 16/169 (9%)
Frame = +3
Query: 287 TGRLHGMKSHDSHIFMENFIPIAFSSLPKHVLDPLIEISQFFKNLCASTLRVDELEKMEK 346
T +LH SH F + + + H ++ L E++ + L S + + +E+
Sbjct: 144 TVKLHRRISHRHSSFSPSTVTHS------HAVELLTELNLTVE-LHTSPIELHSRGSIER 302
Query: 347 NMPIIICQLEQIFPPGFF-----DSMEHL-----------PVHLAYEAILGGPVQYRWMY 390
+ PI QL+ F FF EHL + A+EA + GPV YRWMY
Sbjct: 303 HHPI--SQLQI*FHKSFFLFRSRRGREHL*GWIRAGYLRRDLQ*AHEARIAGPVHYRWMY 476
Query: 391 PFERFMGDSKRAVKNLAKVEGSIVAIYTAKETTYFIGHYFVDRLLTPSN 439
P ERF+ K V+N EGSI Y A E Y D + T N
Sbjct: 477 PIERFILTLKNYVRNRNYPEGSIAEGYVANECLTHCSRYMSDGVQTKFN 623
>TC90382 similar to GP|20161447|dbj|BAB90371. hypothetical protein~similar
to Arabidopsis thaliana chromosome 1 F8K7.2, partial
(13%)
Length = 1047
Score = 35.4 bits (80), Expect = 0.083
Identities = 36/154 (23%), Positives = 68/154 (43%), Gaps = 3/154 (1%)
Frame = +3
Query: 622 PRWTKINKLCNTVDIRVDKKYKEYDPFIMAHNVRQVYYVPYPPTLPRKRGWSVAIK--TK 679
P +++ N+V ++ +KK + F+ RQ++ V P W +K TK
Sbjct: 156 PNSLELSVSINSVPMKEEKK--AFSSFVKKGG-RQMFTVELRPGETTIVSWKKLLKDATK 326
Query: 680 PRGRIETEERNEEVAYQADDMTHVNEIIEVDQVTSWQDSQVEGDQVDPSILEMRN-EVED 738
P G T +++ + +EV++ Q + L M N +D
Sbjct: 327 PNGSASTSQQSRPEPFPGQP-------VEVEENDPAQPHRFSAVIEKIERLYMGNGSSDD 485
Query: 739 ENEDVVDDNNEGDHQDNQVDDGDVDEYNYASDNN 772
E+ V D+++ D +D+ +DD ++DEY + DN+
Sbjct: 486 EDLPDVPDDDQYDTEDSFIDDAELDEY-FQVDNS 584
>TC86145 homologue to GP|10334499|emb|CAC10211. hypothetical protein {Cicer
arietinum}, partial (91%)
Length = 1311
Score = 32.3 bits (72), Expect = 0.71
Identities = 20/58 (34%), Positives = 31/58 (52%), Gaps = 1/58 (1%)
Frame = +1
Query: 714 SWQD-SQVEGDQVDPSILEMRNEVEDENEDVVDDNNEGDHQDNQVDDGDVDEYNYASD 770
SW+ S + D D L +V+DE++D DD+NE D++D D DV ++ D
Sbjct: 412 SWEGGSYLHDDGDDFDDLHDGTDVDDEDDD-EDDDNEEDYEDEDEDAFDVHDHASVGD 582
>TC86146 homologue to GP|10334499|emb|CAC10211. hypothetical protein {Cicer
arietinum}, partial (95%)
Length = 1084
Score = 32.3 bits (72), Expect = 0.71
Identities = 20/58 (34%), Positives = 31/58 (52%), Gaps = 1/58 (1%)
Frame = +3
Query: 714 SWQD-SQVEGDQVDPSILEMRNEVEDENEDVVDDNNEGDHQDNQVDDGDVDEYNYASD 770
SW+ S + D D L +V+DE++D DD+NE D++D D DV ++ D
Sbjct: 231 SWEGGSYLHDDGDDFDDLHDGTDVDDEDDD-EDDDNEEDYEDEDEDAFDVHDHASVGD 401
>TC82397 similar to GP|18377877|gb|AAL67124.1 AT3g53630/F4P12_330
{Arabidopsis thaliana}, partial (9%)
Length = 716
Score = 32.0 bits (71), Expect = 0.92
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Frame = +3
Query: 639 DKKYKEYDPFIMAHNVRQVYYVPYPPTLPRKRGW-SVAIKTKPRGRIETEERNEEVAYQA 697
+KK+K +A +V V+++ P T P K W V+IK + R++ + +
Sbjct: 132 EKKFKP-----IADHVNAVHHLHDPTTFPFKWSWRDVSIKVQ-------NMRHQYIGVKH 275
Query: 698 DDMTHVNEIIEVDQVTSWQD----SQVEGD-QVDPSILEMRNEVEDENEDVVDDNNEGDH 752
++ + D V W++ +V GD ++ P + ++ D E +DD+++ D
Sbjct: 276 KIQSNDHGFNWNDGVIHWENFLNYKRVFGDVKIHP-----KPKLNDGFETEIDDSDDSDG 440
Query: 753 QDNQVDDGDVDE 764
++ DGDV E
Sbjct: 441 DEDHDCDGDVSE 476
>TC87237 similar to GP|160409|gb|AAA29651.1|| mature-parasite-infected
erythrocyte surface antigen {Plasmodium falciparum},
partial (2%)
Length = 2007
Score = 31.6 bits (70), Expect = 1.2
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 11/107 (10%)
Frame = +1
Query: 676 IKTKPRGRIETEERNEEVAYQADDMTHVNEIIEVDQVTSWQDSQVEGDQVDPSI------ 729
+K G ET E EE + Q ++ T + + S Q+ +QV +
Sbjct: 292 LKKNEGGEKETGEITEEKSKQENEETSETNSKDKENEESNQNGSDAKEQVGENHEQDSKQ 471
Query: 730 -LEMRNEVEDENEDVVDDNNEGDHQDNQVDDGDVD----EYNYASDN 771
E N E ++ D E DNQV DG+ + E NY+ DN
Sbjct: 472 GTEETNGTEGGEKEEHDKIKEDTSSDNQVQDGEKNNEAREENYSGDN 612
>TC89319 similar to PIR|T02350|T02350 hypothetical protein T8F5.5 -
Arabidopsis thaliana, partial (53%)
Length = 1436
Score = 31.6 bits (70), Expect = 1.2
Identities = 31/120 (25%), Positives = 53/120 (43%), Gaps = 6/120 (5%)
Frame = +1
Query: 127 DERVFVGPPPKITSEEVWT-----RVCDYPKVTDYGRAVPIPRYGVDHHWTKRSIFWDLP 181
D +FVGPPP E + R + ++ + P GV+H+ + +I
Sbjct: 142 DTELFVGPPPPAMVSEAESANEAERFEEVTRIMEVEINSPYDVLGVNHNMSDGNI--KKK 315
Query: 182 YWKDNLLRHNLDVMHIEKNVFDNIFNTVMDVKGKTKDNEKARK-DLQIYCKRKDLELKPQ 240
YWK +LL H H + N F + + +D EK ++ D +I K++ +LK +
Sbjct: 316 YWKISLLVHPDKCSHPQAN---QAFIKLNKAFKELQDPEKRKEMDEKIKLKQEQEDLKAE 486
>BQ155246
Length = 387
Score = 31.6 bits (70), Expect = 1.2
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +3
Query: 590 EDDFYGVIKHIYELSYNDNKVVLFYCDWFDPSPRWTKINKLCNTVD 635
ED FY I IY + Y +V + C++FD P+WT C +VD
Sbjct: 153 EDAFYFFIIIIYHVFY----LVNYKCNFFD*KPKWTS----CQSVD 266
>TC92189 weakly similar to GP|21536818|gb|AAM61150.1 F-box protein family
AtFBW2 {Arabidopsis thaliana}, partial (32%)
Length = 846
Score = 31.6 bits (70), Expect = 1.2
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 720 VEGDQVDPSILEMRNEVEDENEDVVDDNNEGDHQDNQVDDGDVDEYNYASDNN 772
V Q P + + +V E + D ++ D D++ DD D+DEY+Y D++
Sbjct: 370 VSVQQKFPKLAVLGPQVIGYYEMLEDCSDISDSSDSEYDDSDMDEYDYDDDSD 528
>TC77438 homologue to PIR|T06807|T06807 nucleosome assembly protein 1 -
garden pea, partial (93%)
Length = 1607
Score = 31.2 bits (69), Expect = 1.6
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +2
Query: 687 EERNEEVAYQADDMTHVNEIIE---VDQVTSWQDSQV-EGDQVDPSILEMRNEVEDENED 742
E+ EE+ Q + + I + SW + +G++ ++ +E +DE++D
Sbjct: 899 EDMAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAAQGEEFG----DLDDEDDDEDDD 1066
Query: 743 VVDDNNEGDHQDNQVDDGDVDE 764
DD+ + D +++ DD D +E
Sbjct: 1067AEDDDEDEDEDEDEDDDEDEEE 1132
>BG457701 similar to GP|8778275|gb|A F14D16.10 {Arabidopsis thaliana},
partial (4%)
Length = 646
Score = 30.8 bits (68), Expect = 2.1
Identities = 29/108 (26%), Positives = 45/108 (40%), Gaps = 1/108 (0%)
Frame = +2
Query: 655 RQVYYVPYPPTLPRKRGWSVAIKTKPR-GRIETEERNEEVAYQADDMTHVNEIIEVDQVT 713
R+V +P KR I++ PR R T R + Y+ D + T
Sbjct: 41 RKVKRLPGRTRRETKRRSVGEIQSSPRRSRRATRNRIDYRQYEMSDSE--------TEFT 196
Query: 714 SWQDSQVEGDQVDPSILEMRNEVEDENEDVVDDNNEGDHQDNQVDDGD 761
+ S + DPS E+ N+ E+ENE+ D+ NE + +D D
Sbjct: 197 KLKKSNASANHSDPSENEIENDNENENEN--DNENENGEYVMESEDSD 334
>TC82581 similar to GP|6729042|gb|AAF27038.1| unknown protein {Arabidopsis
thaliana}, partial (32%)
Length = 1258
Score = 30.8 bits (68), Expect = 2.1
Identities = 17/54 (31%), Positives = 31/54 (56%)
Frame = -3
Query: 194 VMHIEKNVFDNIFNTVMDVKGKTKDNEKARKDLQIYCKRKDLELKPQPNGKLLK 247
++H EKN++D + ++++KGK E RKD Y ++ D ++K + G K
Sbjct: 365 IIHHEKNIYDQMMMMMIELKGK*GWCEVERKD--EYGEKSDEKVKEKERGNCNK 210
>AW690594 similar to GP|23498163|emb hypothetical protein {Plasmodium
falciparum 3D7}, partial (10%)
Length = 633
Score = 30.8 bits (68), Expect = 2.1
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 683 RIETEERNEEV---AYQADDMTHVNEIIEVDQVTSWQDSQVEGDQVDPSILEMRNEVEDE 739
R + EE NEE + ++ H E E D+ ++ + E ++ D E E E+E
Sbjct: 33 RRKVEEHNEEEDEGEVEEEEDEHDEE--EEDEHDEEEEEEEEEEEEDEHDDEEEEEEEEE 206
Query: 740 NEDVVDDNNEGDHQD 754
E+ DD+ EG+ +
Sbjct: 207 EEEEEDDDEEGEEDE 251
>BE205031 similar to GP|23498246|em hypothetical protein {Plasmodium
falciparum 3D7}, partial (0%)
Length = 271
Score = 30.4 bits (67), Expect = 2.7
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 718 SQVEG-DQVDPSILEMRNEVEDENEDVVDDNNEGDHQDNQVDD 759
SQ+E +V+ S E E +DE +D DD + D D +VDD
Sbjct: 7 SQLEKVSEVEKSYEERDEERDDERDDERDDERDEDRVDERVDD 135
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.138 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,658,401
Number of Sequences: 36976
Number of extensions: 445439
Number of successful extensions: 2143
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 2084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2122
length of query: 773
length of database: 9,014,727
effective HSP length: 104
effective length of query: 669
effective length of database: 5,169,223
effective search space: 3458210187
effective search space used: 3458210187
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Medicago: description of AC141863.3