TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141862.21 - phase: 0 /pseudo
         (659 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {V...    54  2e-07
AW267981 similar to PIR|H96745|H967 probable blue copper protein...    29  5.0
BF519680 weakly similar to GP|13160399|em aldose reductase {Digi...    29  5.0

>AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
           vinifera}, partial (18%)
          Length = 567

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 30/95 (31%), Positives = 46/95 (47%), Gaps = 4/95 (4%)
 Frame = +3

Query: 568 REKQRSWYLDSGCSRHMTGEKSLFLTLTMKDGGEVKFGGNQTGKIIGTGTIGNSSIS--- 624
           ++  + W +DSGC+ HMT ++ LF  L      +V+       ++ G GT+   S S   
Sbjct: 90  KQPSKYWLIDSGCTHHMTHDRDLFKELNKSTISKVRMLNGAHIEVEGIGTVLVKSHSGYK 269

Query: 625 -INNVWLVDGLKHNLLSISQFCDNGYDVMFSKTNC 658
            I+NV     L  +LLS+ Q    GY V+F    C
Sbjct: 270 QISNVLYAPKLNQSLLSVPQLLTKGYKVLFEHEKC 374


>AW267981 similar to PIR|H96745|H967 probable blue copper protein T9N14.17
           [imported] - Arabidopsis thaliana, partial (14%)
          Length = 584

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 20/49 (40%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
 Frame = +2

Query: 91  KILLVHS-KCMK*V*MSMNPLRRVNPLLCHLKESLQNLLKPTKPVNLKK 138
           KILL H    ++ +*M      RVN L C LK+   N+  PTK + L K
Sbjct: 386 KILLHHEILIIEII*MYFAIYIRVNKLFCILKKQCSNMAPPTKWMKLMK 532


>BF519680 weakly similar to GP|13160399|em aldose reductase {Digitalis
           purpurea}, partial (43%)
          Length = 569

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 261 QQYHQKQYQKLNQIQKMKMRYIPKFLDKNL 290
           QQ+HQ+  +KL+  Q   M Y+ ++ D+N+
Sbjct: 246 QQHHQQHQEKLSMFQDQLMVYLHQYSDQNV 157


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.351    0.154    0.514 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,648,692
Number of Sequences: 36976
Number of extensions: 288389
Number of successful extensions: 2527
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1411
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 1090
Number of HSP's gapped (non-prelim): 1560
length of query: 659
length of database: 9,014,727
effective HSP length: 102
effective length of query: 557
effective length of database: 5,243,175
effective search space: 2920448475
effective search space used: 2920448475
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 62 (28.5 bits)