TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141862.20 - phase: 0 /pseudo
         (954 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG644690 weakly similar to GP|18542179|gb putative pol protein {...    47  3e-08
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ...    41  0.002
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported...    31  2.6
TC82084 weakly similar to PIR|T01980|T01980 dnaJ protein homolog...    29  7.5

>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
           partial (22%)
          Length = 629

 Score = 46.6 bits (109), Expect(2) = 3e-08
 Identities = 37/98 (37%), Positives = 50/98 (50%), Gaps = 6/98 (6%)
 Frame = -1

Query: 510 SRLQSTRRH*LH*NICSNCKIGS----NQVTSILRN*SWHNI--ISNGCKKCFS*WCH*R 563
           +R+QS RR+ L *   + C+ GS    N    I      H +  + NGC++C  *W   R
Sbjct: 395 ARIQSKRRNRL**GFFTCCQNGSY*NFNSFCCI------HGVQAVPNGCEECIY*WRSQR 234

Query: 564 RSVC*TTSWI*GS*AS*PCL*T*EITIWLETSSQSLV* 601
             VC  TSWI*    +  C+     TIW E SS+S+V*
Sbjct: 233 GGVCQATSWI*RCRGTKSCVQIE*DTIWSEASSKSMV* 120



 Score = 30.0 bits (66), Expect(2) = 3e-08
 Identities = 22/53 (41%), Positives = 29/53 (54%)
 Frame = -2

Query: 442 *A*NC*RSSLR*WMDISYARRAKSVSEE*CVGSGTQTFSEEHYWNKMGIQKQA 494
           *A  C*RS     +D  YARR  SV ++* +  G+ T  +   WN +G  KQA
Sbjct: 589 *AQEC*RSIA*CRLDQFYARRTPSV*KK*GMVPGSST*RQNSNWN*VGF*KQA 431


>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (7%)
          Length = 763

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +1

Query: 501 NQKQSQTCCSRLQSTRRH*LH*NICSNCKIGSNQVTSILRN*SWHNIISNGCKKCFS*W- 559
           +Q QS+  C RL+ T RH L  ++C++C   ++  T  + +  W    S+ CK C   W 
Sbjct: 145 DQIQSKASCKRLRETTRHRLRRSVCTSCSNRNHMTTLGVSSN*WMLDPSHRCKNCIPKWT 324

Query: 560 -CH*RRSVC 567
            C  R S C
Sbjct: 325 LCGNRNSHC 351


>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
           Arabidopsis thaliana, partial (17%)
          Length = 618

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = -3

Query: 502 QKQSQTCCSRLQSTRRH*LH*NICSNCKIGSNQVTSILRN*SWHNIISNGCKKCFS 557
           ++++ T   R+ S     LH*+IC++ +   N     L    W  I++NGC++C S
Sbjct: 382 EEEN*TSSKRVYSDIWRGLH*DICTSSQATHN*NCFKLGCEPWMGIVANGCEECIS 215


>TC82084 weakly similar to PIR|T01980|T01980 dnaJ protein homolog T9A4.1 -
           Arabidopsis thaliana, partial (16%)
          Length = 896

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 15/36 (41%), Positives = 21/36 (57%), Gaps = 2/36 (5%)
 Frame = +3

Query: 710 SNASNLHLKQRRYWN--CSRPEVIQRYDWFSVIPHC 743
           S  S+L   QRR+    CSR E +Q+  W+ +IP C
Sbjct: 189 SEFSSLQRPQRRFSCDFCSRREKVQKRSWWLLIPFC 296


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.390    0.173    0.760 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,015,064
Number of Sequences: 36976
Number of extensions: 473329
Number of successful extensions: 8242
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 154
Number of HSP's that attempted gapping in prelim test: 7226
Number of HSP's gapped (non-prelim): 1290
length of query: 954
length of database: 9,014,727
effective HSP length: 105
effective length of query: 849
effective length of database: 5,132,247
effective search space: 4357277703
effective search space used: 4357277703
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 34 (21.7 bits)
S2: 63 (28.9 bits)