
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141323.10 + phase: 0 /pseudo
(337 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC82022 similar to GP|6648214|gb|AAF21212.1| unknown protein {Ar... 45 3e-05
TC91938 similar to PIR|E96612|E96612 probable transcription fact... 42 3e-04
BF645457 similar to PIR|T52301|T5 GYMNOS/PICKLE protein [importe... 39 0.004
AW560016 similar to GP|8778713|gb T25N20.3 {Arabidopsis thaliana... 39 0.004
BF634103 weakly similar to GP|20260434|gb putative PHD-type zinc... 37 0.011
TC92618 weakly similar to PIR|T02416|T02416 probable SET-domain ... 34 0.070
TC79428 similar to PIR|T09661|T09661 ascorbate oxidase promoter-... 33 0.16
BF648767 32 0.45
TC81294 weakly similar to PIR|E96501|E96501 hypothetical protein... 31 0.77
BE325946 similar to GP|6466950|gb| putative ribulose-1 5-bisphos... 30 1.3
BQ148466 weakly similar to PIR|T46067|T46 hypothetical protein T... 30 1.7
TC81143 weakly similar to PIR|T08562|T08562 hypothetical protein... 29 2.2
TC90541 homologue to GP|11862963|dbj|BAB19344. putative curly le... 29 2.9
BI312377 similar to GP|8843772|dbj contains similarity to zinc f... 29 2.9
TC78762 similar to GP|9294670|dbj|BAB03019.1 gene_id:F14O13.20~u... 29 2.9
TC82678 weakly similar to GP|15072335|gb|AAG01372.1 21 kDa extra... 29 2.9
BI272832 similar to GP|18650643|gb At1g21480/F24J8_23 {Arabidops... 28 3.8
TC82631 similar to GP|21553698|gb|AAM62791.1 putative growth inh... 28 3.8
TC78734 28 3.8
AL381047 homologue to PIR|A86193|A86 hypothetical protein [impor... 28 5.0
>TC82022 similar to GP|6648214|gb|AAF21212.1| unknown protein {Arabidopsis
thaliana}, partial (24%)
Length = 1153
Score = 45.4 bits (106), Expect = 3e-05
Identities = 18/55 (32%), Positives = 26/55 (46%), Gaps = 6/55 (10%)
Frame = +3
Query: 28 VCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCP------SCSHN 76
+C+ C P+K + C CD YH +CL P +V + CP SC+ N
Sbjct: 753 ICEACRRTGDPSKFMFCKRCDGAYHCYCLQPPHKNVSTGPYLCPKHTKCHSCASN 917
>TC91938 similar to PIR|E96612|E96612 probable transcription factor
F12K22.14 [imported] - Arabidopsis thaliana, partial
(11%)
Length = 685
Score = 42.4 bits (98), Expect = 3e-04
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Frame = +3
Query: 28 VCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKS-SWFCPSCSHNPKIPKFPLVQ 86
VC C S T+ L C C +H CL P++P+ + W CP C+ +
Sbjct: 96 VCMVCKQKPSETETLHCKTCTTPWHAPCL-PVVPTTSEMLDWLCPDCAQPSDVVAASAAP 272
Query: 87 TKIIDFFKIQRTSDASQILNHEEEKAE**LGCFKKEKKVVGICAK**FEEEIRTDGVV 144
+ D R + L EE++ KK +++ G K E +R GV+
Sbjct: 273 SVAGDLVSAIRAIENDPSLTEEEKR--------KKRQELHGGSLKEKDEVHVRRSGVL 422
>BF645457 similar to PIR|T52301|T5 GYMNOS/PICKLE protein [imported] -
Arabidopsis thaliana, partial (9%)
Length = 560
Score = 38.5 bits (88), Expect = 0.004
Identities = 17/46 (36%), Positives = 20/46 (42%)
Frame = +2
Query: 28 VCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSC 73
+CQ C LL C C+ YH CL P L +W CP C
Sbjct: 251 LCQACGESGD---LLSCATCNYAYHSSCLLPPLKGPAPDNWRCPEC 379
>AW560016 similar to GP|8778713|gb T25N20.3 {Arabidopsis thaliana}, partial
(13%)
Length = 657
Score = 38.5 bits (88), Expect = 0.004
Identities = 17/53 (32%), Positives = 26/53 (48%)
Frame = +1
Query: 22 NNDDDVVCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSCS 74
N+ +D C C G L+ CD C + +H CL + +P W CP+C+
Sbjct: 316 NDPNDDTCGICGDGGD---LICCDGCPSTFHQSCLD--IQMLPPGEWRCPNCT 459
>BF634103 weakly similar to GP|20260434|gb putative PHD-type zinc finger
protein {Arabidopsis thaliana}, partial (3%)
Length = 369
Score = 37.0 bits (84), Expect = 0.011
Identities = 17/51 (33%), Positives = 25/51 (48%)
Frame = +3
Query: 25 DDVVCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSCSH 75
+D+ C C G + L LCD C +H C + + S P+ +CP C H
Sbjct: 60 NDLACIVCWDGGN---LFLCDGCPRAFHKECAS--VSSTPRRGRYCPICQH 197
>TC92618 weakly similar to PIR|T02416|T02416 probable SET-domain
transcription regulator At2g23750 [imported] -
Arabidopsis thaliana, partial (77%)
Length = 781
Score = 34.3 bits (77), Expect = 0.070
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 16/146 (10%)
Frame = +3
Query: 197 MMERGECPPLMVVYDPVEGFTIEADKSIKDLTIITEYVGDVDFLKNREHDDGDS-----I 251
+++ G L V +GF + A ++I T + EY+G+V + + G
Sbjct: 60 ILQNGVRVKLEVFMTEKKGFGVRAGEAILRGTFVCEYIGEVLEQQEAHNRRGSKENCSYF 239
Query: 252 MTLLSASNPSQSL-------VICPDKRSNIARFINGINNHTPEGKKKQNLKCVRYNVDG- 303
+ + + +N + L VI N++RFIN N+ +P NL + V+
Sbjct: 240 LDIDARANHTSRLVEGHPRYVIDSTTYGNVSRFIN--NSCSP------NLVDYKVLVEAT 395
Query: 304 ECR---VLLIANRDIAKGERLYYDYN 326
+C+ + L A+RDIA GE L ++Y+
Sbjct: 396 DCKHAHIGLYASRDIALGEELTFNYD 473
>TC79428 similar to PIR|T09661|T09661 ascorbate oxidase promoter-binding
protein AOBP - winter squash, partial (27%)
Length = 997
Score = 33.1 bits (74), Expect = 0.16
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +1
Query: 14 KKQSTTFNNNDDDVVCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSC 73
++ TT NNND + K P KLLLC C++ FC +V + +FC +C
Sbjct: 454 EQSETTANNNDTQE-----KTLKKPDKLLLCPRCNSADTKFCYYNNY-NVNQPRYFCKAC 615
>BF648767
Length = 544
Score = 31.6 bits (70), Expect = 0.45
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +3
Query: 25 DDVVCQKCNSGKSPTKLLLCDNC-DNGYHLFCLTPILPSVPKSSWFCPSC 73
+ VVC C P + C+NC D H +CL + + W C C
Sbjct: 156 EKVVCLTCGDIGFPEVRVFCNNCKDCALHRYCLDGPVIFTEEVIWLCEDC 305
>TC81294 weakly similar to PIR|E96501|E96501 hypothetical protein F28H19.3
[imported] - Arabidopsis thaliana, partial (9%)
Length = 1154
Score = 30.8 bits (68), Expect = 0.77
Identities = 14/54 (25%), Positives = 20/54 (36%), Gaps = 1/54 (1%)
Frame = +2
Query: 26 DVVCQKCNSGKSPTKLLLCDNCDN-GYHLFCLTPILPSVPKSSWFCPSCSHNPK 78
+ VC C P ++ C C H +CL + + WFC C K
Sbjct: 191 EAVCLTCGDVGFPEAIVFCTECQACALHRYCLDGPVIFTDEVIWFCEDCEPEAK 352
>BE325946 similar to GP|6466950|gb| putative ribulose-1 5-bisphosphate
carboxylase/oxygenase small subunit N-methyltransferase
I, partial (20%)
Length = 462
Score = 30.0 bits (66), Expect = 1.3
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +1
Query: 41 LLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSCSHNPK---IPKFPLVQTKII 90
L+ +N G L + P L P S W CP K +P +PL+ T +I
Sbjct: 280 LVALNNIRKGEKLLFVPPQLVITPDSEWSCPEAGEVLKKNSVPDWPLLATYLI 438
>BQ148466 weakly similar to PIR|T46067|T46 hypothetical protein T18N14.90 -
Arabidopsis thaliana, partial (28%)
Length = 547
Score = 29.6 bits (65), Expect = 1.7
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = -1
Query: 180 NAVLSKEDTETLNLCRSMMERGECPPLMVV 209
N VLS TE L+LC + + E PPL+ +
Sbjct: 100 NLVLSLSPTENLHLCNQICTQQELPPLVCI 11
>TC81143 weakly similar to PIR|T08562|T08562 hypothetical protein T22F8.40 -
Arabidopsis thaliana, partial (27%)
Length = 988
Score = 29.3 bits (64), Expect = 2.2
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 33 NSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSCSHNPK 78
N+ S +L+C + YH CL I P + K CP C+ K
Sbjct: 191 NNDLSVVSVLICGHV---YHAECLESITPEINKYDPACPVCTFGEK 319
>TC90541 homologue to GP|11862963|dbj|BAB19344. putative curly leaf protein
{Oryza sativa (japonica cultivar-group)}, partial (36%)
Length = 788
Score = 28.9 bits (63), Expect = 2.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 301 VDGECRVLLIANRDIAKGERLYYDY 325
VDG+ RV + A I GE L+YDY
Sbjct: 677 VDGDHRVGIFAKERINAGEELFYDY 751
>BI312377 similar to GP|8843772|dbj contains similarity to zinc finger
protein~gene_id:MYN8.4 {Arabidopsis thaliana}, partial
(7%)
Length = 583
Score = 28.9 bits (63), Expect = 2.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 302 DGECRVLLIANRDIAKGERLYYDY 325
D E R++LIA +++ G+ L YDY
Sbjct: 89 DDESRIVLIAKTNVSAGDELTYDY 160
>TC78762 similar to GP|9294670|dbj|BAB03019.1 gene_id:F14O13.20~unknown
protein {Arabidopsis thaliana}, partial (87%)
Length = 976
Score = 28.9 bits (63), Expect = 2.9
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +1
Query: 40 KLLLCDNCD---NGYHLFCLTPILPSVPKSSWFCPSCS 74
+++ CDN D +H C+ L PK W+C SC+
Sbjct: 658 EMVACDNPDCKIEWFHFGCVG--LKEQPKGKWYCSSCA 765
>TC82678 weakly similar to GP|15072335|gb|AAG01372.1 21 kDa extracellular
calmodulin-binding protein {Angelica dahurica}, partial
(86%)
Length = 677
Score = 28.9 bits (63), Expect = 2.9
Identities = 14/53 (26%), Positives = 25/53 (46%)
Frame = -3
Query: 38 PTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSCSHNPKIPKFPLVQTKII 90
P+ L C+ + G+ P VP + CPS H P + +PL++ ++
Sbjct: 447 PS*TLSCEVVEVGFAPNTCIIHTPDVPPGT*PCPSNCHTPDV*SYPLIRISVL 289
>BI272832 similar to GP|18650643|gb At1g21480/F24J8_23 {Arabidopsis
thaliana}, partial (42%)
Length = 607
Score = 28.5 bits (62), Expect = 3.8
Identities = 18/59 (30%), Positives = 25/59 (41%), Gaps = 7/59 (11%)
Frame = -2
Query: 56 LTPILPSVPKSSWFCPSCSHNPKIPKFPL-------VQTKIIDFFKIQRTSDASQILNH 107
+TP+L +W C S +NP P FPL + T + +K Q D L H
Sbjct: 198 MTPLLGR--GKTWNCASVQNNPSFPAFPLH*ISNLDIPTSLEIVWKAQLAEDDQLFLVH 28
>TC82631 similar to GP|21553698|gb|AAM62791.1 putative growth inhibitory
protein {Arabidopsis thaliana}, partial (67%)
Length = 770
Score = 28.5 bits (62), Expect = 3.8
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +1
Query: 28 VCQKCNSGKSPTKLLLCDN--CDNG--YHLFCLTPILPSVPKSSWFCPSCSHNPK 78
VC + + G ++ CDN C G +H C+ + K W+CP+C P+
Sbjct: 316 VCHQVSFGD----MIACDNENCRGGEWFHYSCVGLTQETRFKGKWYCPTCRLLPQ 468
>TC78734
Length = 1693
Score = 28.5 bits (62), Expect = 3.8
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = +1
Query: 32 CNSGKSPTKLLLCDNCDNGYHLFCLTPILP 61
C SG + T L+LC NG+ L C+ +LP
Sbjct: 655 CFSGMTWTMLILCLMLCNGFLLLCIGQLLP 744
>AL381047 homologue to PIR|A86193|A86 hypothetical protein [imported] -
Arabidopsis thaliana, partial (5%)
Length = 490
Score = 28.1 bits (61), Expect = 5.0
Identities = 11/26 (42%), Positives = 18/26 (68%)
Frame = +3
Query: 300 NVDGECRVLLIANRDIAKGERLYYDY 325
+V+G+ +++ A RDI + E L YDY
Sbjct: 15 SVNGDEHIIIFAKRDIKQWEELTYDY 92
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.333 0.146 0.480
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,940,705
Number of Sequences: 36976
Number of extensions: 196572
Number of successful extensions: 1137
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of query: 337
length of database: 9,014,727
effective HSP length: 97
effective length of query: 240
effective length of database: 5,428,055
effective search space: 1302733200
effective search space used: 1302733200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 59 (27.3 bits)
Medicago: description of AC141323.10