Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141323.10 + phase: 0 /pseudo
         (337 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC82022 similar to GP|6648214|gb|AAF21212.1| unknown protein {Ar...    45  3e-05
TC91938 similar to PIR|E96612|E96612 probable transcription fact...    42  3e-04
BF645457 similar to PIR|T52301|T5 GYMNOS/PICKLE protein [importe...    39  0.004
AW560016 similar to GP|8778713|gb T25N20.3 {Arabidopsis thaliana...    39  0.004
BF634103 weakly similar to GP|20260434|gb putative PHD-type zinc...    37  0.011
TC92618 weakly similar to PIR|T02416|T02416 probable SET-domain ...    34  0.070
TC79428 similar to PIR|T09661|T09661 ascorbate oxidase promoter-...    33  0.16
BF648767                                                               32  0.45
TC81294 weakly similar to PIR|E96501|E96501 hypothetical protein...    31  0.77
BE325946 similar to GP|6466950|gb| putative ribulose-1 5-bisphos...    30  1.3
BQ148466 weakly similar to PIR|T46067|T46 hypothetical protein T...    30  1.7
TC81143 weakly similar to PIR|T08562|T08562 hypothetical protein...    29  2.2
TC90541 homologue to GP|11862963|dbj|BAB19344. putative curly le...    29  2.9
BI312377 similar to GP|8843772|dbj contains similarity to zinc f...    29  2.9
TC78762 similar to GP|9294670|dbj|BAB03019.1 gene_id:F14O13.20~u...    29  2.9
TC82678 weakly similar to GP|15072335|gb|AAG01372.1 21 kDa extra...    29  2.9
BI272832 similar to GP|18650643|gb At1g21480/F24J8_23 {Arabidops...    28  3.8
TC82631 similar to GP|21553698|gb|AAM62791.1 putative growth inh...    28  3.8
TC78734                                                                28  3.8
AL381047 homologue to PIR|A86193|A86 hypothetical protein [impor...    28  5.0

>TC82022 similar to GP|6648214|gb|AAF21212.1| unknown protein {Arabidopsis
           thaliana}, partial (24%)
          Length = 1153

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 18/55 (32%), Positives = 26/55 (46%), Gaps = 6/55 (10%)
 Frame = +3

Query: 28  VCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCP------SCSHN 76
           +C+ C     P+K + C  CD  YH +CL P   +V    + CP      SC+ N
Sbjct: 753 ICEACRRTGDPSKFMFCKRCDGAYHCYCLQPPHKNVSTGPYLCPKHTKCHSCASN 917


>TC91938 similar to PIR|E96612|E96612 probable transcription factor
           F12K22.14 [imported] - Arabidopsis thaliana, partial
           (11%)
          Length = 685

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
 Frame = +3

Query: 28  VCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKS-SWFCPSCSHNPKIPKFPLVQ 86
           VC  C    S T+ L C  C   +H  CL P++P+  +   W CP C+    +       
Sbjct: 96  VCMVCKQKPSETETLHCKTCTTPWHAPCL-PVVPTTSEMLDWLCPDCAQPSDVVAASAAP 272

Query: 87  TKIIDFFKIQRTSDASQILNHEEEKAE**LGCFKKEKKVVGICAK**FEEEIRTDGVV 144
           +   D     R  +    L  EE++        KK +++ G   K   E  +R  GV+
Sbjct: 273 SVAGDLVSAIRAIENDPSLTEEEKR--------KKRQELHGGSLKEKDEVHVRRSGVL 422


>BF645457 similar to PIR|T52301|T5 GYMNOS/PICKLE protein [imported] -
           Arabidopsis thaliana, partial (9%)
          Length = 560

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 17/46 (36%), Positives = 20/46 (42%)
 Frame = +2

Query: 28  VCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSC 73
           +CQ C        LL C  C+  YH  CL P L      +W CP C
Sbjct: 251 LCQACGESGD---LLSCATCNYAYHSSCLLPPLKGPAPDNWRCPEC 379


>AW560016 similar to GP|8778713|gb T25N20.3 {Arabidopsis thaliana}, partial
           (13%)
          Length = 657

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 17/53 (32%), Positives = 26/53 (48%)
 Frame = +1

Query: 22  NNDDDVVCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSCS 74
           N+ +D  C  C  G     L+ CD C + +H  CL   +  +P   W CP+C+
Sbjct: 316 NDPNDDTCGICGDGGD---LICCDGCPSTFHQSCLD--IQMLPPGEWRCPNCT 459


>BF634103 weakly similar to GP|20260434|gb putative PHD-type zinc finger
           protein {Arabidopsis thaliana}, partial (3%)
          Length = 369

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 17/51 (33%), Positives = 25/51 (48%)
 Frame = +3

Query: 25  DDVVCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSCSH 75
           +D+ C  C  G +   L LCD C   +H  C +  + S P+   +CP C H
Sbjct: 60  NDLACIVCWDGGN---LFLCDGCPRAFHKECAS--VSSTPRRGRYCPICQH 197


>TC92618 weakly similar to PIR|T02416|T02416 probable SET-domain
           transcription regulator At2g23750 [imported] -
           Arabidopsis thaliana, partial (77%)
          Length = 781

 Score = 34.3 bits (77), Expect = 0.070
 Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 16/146 (10%)
 Frame = +3

Query: 197 MMERGECPPLMVVYDPVEGFTIEADKSIKDLTIITEYVGDVDFLKNREHDDGDS-----I 251
           +++ G    L V     +GF + A ++I   T + EY+G+V   +   +  G        
Sbjct: 60  ILQNGVRVKLEVFMTEKKGFGVRAGEAILRGTFVCEYIGEVLEQQEAHNRRGSKENCSYF 239

Query: 252 MTLLSASNPSQSL-------VICPDKRSNIARFINGINNHTPEGKKKQNLKCVRYNVDG- 303
           + + + +N +  L       VI      N++RFIN  N+ +P      NL   +  V+  
Sbjct: 240 LDIDARANHTSRLVEGHPRYVIDSTTYGNVSRFIN--NSCSP------NLVDYKVLVEAT 395

Query: 304 ECR---VLLIANRDIAKGERLYYDYN 326
           +C+   + L A+RDIA GE L ++Y+
Sbjct: 396 DCKHAHIGLYASRDIALGEELTFNYD 473


>TC79428 similar to PIR|T09661|T09661 ascorbate oxidase promoter-binding
           protein AOBP - winter squash, partial (27%)
          Length = 997

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +1

Query: 14  KKQSTTFNNNDDDVVCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSC 73
           ++  TT NNND         + K P KLLLC  C++    FC      +V +  +FC +C
Sbjct: 454 EQSETTANNNDTQE-----KTLKKPDKLLLCPRCNSADTKFCYYNNY-NVNQPRYFCKAC 615


>BF648767 
          Length = 544

 Score = 31.6 bits (70), Expect = 0.45
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = +3

Query: 25  DDVVCQKCNSGKSPTKLLLCDNC-DNGYHLFCLTPILPSVPKSSWFCPSC 73
           + VVC  C     P   + C+NC D   H +CL   +    +  W C  C
Sbjct: 156 EKVVCLTCGDIGFPEVRVFCNNCKDCALHRYCLDGPVIFTEEVIWLCEDC 305


>TC81294 weakly similar to PIR|E96501|E96501 hypothetical protein F28H19.3
           [imported] - Arabidopsis thaliana, partial (9%)
          Length = 1154

 Score = 30.8 bits (68), Expect = 0.77
 Identities = 14/54 (25%), Positives = 20/54 (36%), Gaps = 1/54 (1%)
 Frame = +2

Query: 26  DVVCQKCNSGKSPTKLLLCDNCDN-GYHLFCLTPILPSVPKSSWFCPSCSHNPK 78
           + VC  C     P  ++ C  C     H +CL   +    +  WFC  C    K
Sbjct: 191 EAVCLTCGDVGFPEAIVFCTECQACALHRYCLDGPVIFTDEVIWFCEDCEPEAK 352


>BE325946 similar to GP|6466950|gb| putative ribulose-1 5-bisphosphate
           carboxylase/oxygenase small subunit N-methyltransferase
           I, partial (20%)
          Length = 462

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +1

Query: 41  LLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSCSHNPK---IPKFPLVQTKII 90
           L+  +N   G  L  + P L   P S W CP      K   +P +PL+ T +I
Sbjct: 280 LVALNNIRKGEKLLFVPPQLVITPDSEWSCPEAGEVLKKNSVPDWPLLATYLI 438


>BQ148466 weakly similar to PIR|T46067|T46 hypothetical protein T18N14.90 -
           Arabidopsis thaliana, partial (28%)
          Length = 547

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 13/30 (43%), Positives = 18/30 (59%)
 Frame = -1

Query: 180 NAVLSKEDTETLNLCRSMMERGECPPLMVV 209
           N VLS   TE L+LC  +  + E PPL+ +
Sbjct: 100 NLVLSLSPTENLHLCNQICTQQELPPLVCI 11


>TC81143 weakly similar to PIR|T08562|T08562 hypothetical protein T22F8.40 -
           Arabidopsis thaliana, partial (27%)
          Length = 988

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 33  NSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSCSHNPK 78
           N+  S   +L+C +    YH  CL  I P + K    CP C+   K
Sbjct: 191 NNDLSVVSVLICGHV---YHAECLESITPEINKYDPACPVCTFGEK 319


>TC90541 homologue to GP|11862963|dbj|BAB19344. putative curly leaf protein
           {Oryza sativa (japonica cultivar-group)}, partial (36%)
          Length = 788

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 301 VDGECRVLLIANRDIAKGERLYYDY 325
           VDG+ RV + A   I  GE L+YDY
Sbjct: 677 VDGDHRVGIFAKERINAGEELFYDY 751


>BI312377 similar to GP|8843772|dbj contains similarity to zinc finger
           protein~gene_id:MYN8.4 {Arabidopsis thaliana}, partial
           (7%)
          Length = 583

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 302 DGECRVLLIANRDIAKGERLYYDY 325
           D E R++LIA  +++ G+ L YDY
Sbjct: 89  DDESRIVLIAKTNVSAGDELTYDY 160


>TC78762 similar to GP|9294670|dbj|BAB03019.1 gene_id:F14O13.20~unknown
           protein {Arabidopsis thaliana}, partial (87%)
          Length = 976

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +1

Query: 40  KLLLCDNCD---NGYHLFCLTPILPSVPKSSWFCPSCS 74
           +++ CDN D     +H  C+   L   PK  W+C SC+
Sbjct: 658 EMVACDNPDCKIEWFHFGCVG--LKEQPKGKWYCSSCA 765


>TC82678 weakly similar to GP|15072335|gb|AAG01372.1 21 kDa extracellular
           calmodulin-binding protein {Angelica dahurica}, partial
           (86%)
          Length = 677

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 14/53 (26%), Positives = 25/53 (46%)
 Frame = -3

Query: 38  PTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSCSHNPKIPKFPLVQTKII 90
           P+  L C+  + G+         P VP  +  CPS  H P +  +PL++  ++
Sbjct: 447 PS*TLSCEVVEVGFAPNTCIIHTPDVPPGT*PCPSNCHTPDV*SYPLIRISVL 289


>BI272832 similar to GP|18650643|gb At1g21480/F24J8_23 {Arabidopsis
           thaliana}, partial (42%)
          Length = 607

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 18/59 (30%), Positives = 25/59 (41%), Gaps = 7/59 (11%)
 Frame = -2

Query: 56  LTPILPSVPKSSWFCPSCSHNPKIPKFPL-------VQTKIIDFFKIQRTSDASQILNH 107
           +TP+L      +W C S  +NP  P FPL       + T +   +K Q   D    L H
Sbjct: 198 MTPLLGR--GKTWNCASVQNNPSFPAFPLH*ISNLDIPTSLEIVWKAQLAEDDQLFLVH 28


>TC82631 similar to GP|21553698|gb|AAM62791.1 putative growth inhibitory
           protein {Arabidopsis thaliana}, partial (67%)
          Length = 770

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +1

Query: 28  VCQKCNSGKSPTKLLLCDN--CDNG--YHLFCLTPILPSVPKSSWFCPSCSHNPK 78
           VC + + G     ++ CDN  C  G  +H  C+     +  K  W+CP+C   P+
Sbjct: 316 VCHQVSFGD----MIACDNENCRGGEWFHYSCVGLTQETRFKGKWYCPTCRLLPQ 468


>TC78734 
          Length = 1693

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 13/30 (43%), Positives = 18/30 (59%)
 Frame = +1

Query: 32  CNSGKSPTKLLLCDNCDNGYHLFCLTPILP 61
           C SG + T L+LC    NG+ L C+  +LP
Sbjct: 655 CFSGMTWTMLILCLMLCNGFLLLCIGQLLP 744


>AL381047 homologue to PIR|A86193|A86 hypothetical protein [imported] -
           Arabidopsis thaliana, partial (5%)
          Length = 490

 Score = 28.1 bits (61), Expect = 5.0
 Identities = 11/26 (42%), Positives = 18/26 (68%)
 Frame = +3

Query: 300 NVDGECRVLLIANRDIAKGERLYYDY 325
           +V+G+  +++ A RDI + E L YDY
Sbjct: 15  SVNGDEHIIIFAKRDIKQWEELTYDY 92


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.333    0.146    0.480 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,940,705
Number of Sequences: 36976
Number of extensions: 196572
Number of successful extensions: 1137
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of query: 337
length of database: 9,014,727
effective HSP length: 97
effective length of query: 240
effective length of database: 5,428,055
effective search space: 1302733200
effective search space used: 1302733200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 59 (27.3 bits)


Medicago: description of AC141323.10