TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141114.7 + phase: 0 
         (246 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG451759 similar to GP|6635256|dbj| tRNA intron endonuclease {Ar...   328  1e-98
BE319516 homologue to GP|9279623|dbj| ARP2 (actin-related protei...    28  2.5
TC88253 weakly similar to GP|15810597|gb|AAL07186.1 unknown prot...    28  3.2
TC93348                                                                27  5.5
BF635018 GP|2688582|gb| B. burgdorferi predicted coding region B...    27  7.2
TC81497 similar to GP|17104639|gb|AAL34208.1 unknown protein {Ar...    27  9.4

>BG451759 similar to GP|6635256|dbj| tRNA intron endonuclease {Arabidopsis
           thaliana}, partial (31%)
          Length = 651

 Score =  328 bits (841), Expect(2) = 1e-98
 Identities = 163/198 (82%), Positives = 172/198 (86%)
 Frame = +1

Query: 49  CVHLTVQAEQLDLLDKACFGRPVRIVEKDMYWFQLTVEEAFYLCYSLKCLKIKINVGADT 108
           C     +    DLLDKACFGRPVRIV+KDMYWFQLTVEEAFYL YSLKCLKI  N GADT
Sbjct: 61  CTX*QCKQNNXDLLDKACFGRPVRIVDKDMYWFQLTVEEAFYLSYSLKCLKI--NDGADT 234

Query: 109 GPLNDEELWHYFRSKKETFPYFYKAYSHLRMKNWVVRSGAQYGVDLIVYRHHPARVHSEY 168
           GPLNDEELW  F+SKKETFPYFYKAYSHLRMKNWVVRS +QYGVD IVYRHHPA VHSEY
Sbjct: 235 GPLNDEELWCCFKSKKETFPYFYKAYSHLRMKNWVVRSRSQYGVDFIVYRHHPAWVHSEY 414

Query: 169 GVLVLSHDKDGDLNGRLRVWSDVHCTTRLLGGVAKTLLVLYVNKNGNNDESLLCLTNYTV 228
           GVLVLSHD DG+LNGRLRV SDV CTT+LLG VAKTLLVLYVNKNG+ D+SLLCLTNYT+
Sbjct: 415 GVLVLSHDNDGELNGRLRV*SDVLCTTQLLGSVAKTLLVLYVNKNGDCDKSLLCLTNYTI 594

Query: 229 EERTISRWSPEQCRERSI 246
           EERTISRWSP Q R RSI
Sbjct: 595 EERTISRWSPXQWR*RSI 648



 Score = 49.3 bits (116), Expect(2) = 1e-98
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = +2

Query: 30 SQLQSSLVQSNTCGFLSDNCVH 51
          SQLQSSLVQSNTCGFLSDNCVH
Sbjct: 2  SQLQSSLVQSNTCGFLSDNCVH 67


>BE319516 homologue to GP|9279623|dbj| ARP2 (actin-related protein 2)
           {Arabidopsis thaliana}, partial (20%)
          Length = 389

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 18/67 (26%), Positives = 31/67 (45%), Gaps = 6/67 (8%)
 Frame = +3

Query: 164 VHSEYGVLVLSHDKDGDLNGRLRVWSD------VHCTTRLLGGVAKTLLVLYVNKNGNND 217
           +H  Y  +VL  +KDG    RLR+         V+    +L G+ K     ++N+    +
Sbjct: 42  IHDRYLDVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWINREDYLE 221

Query: 218 ESLLCLT 224
           E + CL+
Sbjct: 222 EGIACLS 242


>TC88253 weakly similar to GP|15810597|gb|AAL07186.1 unknown protein
           {Arabidopsis thaliana}, partial (51%)
          Length = 1122

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = +1

Query: 6   KGKDAKSKKEAEAEALKEPMSKIISQLQSSLVQSNTCGFLSDNCVHLTVQAEQLDLLDKA 65
           K K  +SKK+ + +  K+   K+I +L+S++V       +    +HL     ++ +L   
Sbjct: 733 KRKRKRSKKKRKKKVKKKTKEKMIIKLKSNVVNIGHQKTMLTMLMHLRFSVMRIQMLVLL 912

Query: 66  CFGRPVRIV 74
           C  RPV I+
Sbjct: 913 C--RPVIII 933


>TC93348 
          Length = 605

 Score = 27.3 bits (59), Expect = 5.5
 Identities = 10/29 (34%), Positives = 16/29 (54%)
 Frame = +1

Query: 126 TFPYFYKAYSHLRMKNWVVRSGAQYGVDL 154
           +FP  Y  YS +  + WV+R   +Y + L
Sbjct: 238 SFPLIYHIYSSIVARYWVMRGAPEYHIKL 324


>BF635018 GP|2688582|gb| B. burgdorferi predicted coding region BB0654
           {Borrelia burgdorferi}, partial (2%)
          Length = 669

 Score = 26.9 bits (58), Expect = 7.2
 Identities = 11/32 (34%), Positives = 18/32 (55%)
 Frame = +2

Query: 4   RWKGKDAKSKKEAEAEALKEPMSKIISQLQSS 35
           RW  + AKS+ E+E    K+ M  + S ++ S
Sbjct: 500 RWTAESAKSQAESELSNAKKTMKNLSSMIEES 595


>TC81497 similar to GP|17104639|gb|AAL34208.1 unknown protein {Arabidopsis
           thaliana}, partial (65%)
          Length = 1016

 Score = 26.6 bits (57), Expect = 9.4
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 71  VRIVEKDMYWFQLTVEEAFYLCYSLKCLKIKINVGADT 108
           ++   +D+Y   L +   F+ C S+K LKI+  V +DT
Sbjct: 473 IKFSGRDLYARNLKLLVPFFDCASIKLLKIEKEVESDT 586


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.320    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,165,561
Number of Sequences: 36976
Number of extensions: 136050
Number of successful extensions: 603
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of query: 246
length of database: 9,014,727
effective HSP length: 94
effective length of query: 152
effective length of database: 5,538,983
effective search space: 841925416
effective search space used: 841925416
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)