BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141111.7 - phase: 0 /pseudo
(1730 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC90445 homologue to PIR|C84507|C84507 hypothetical protein At2g... 316 0.0
TC84105 homologue to PIR|C84507|C84507 hypothetical protein At2g... 498 e-145
TC83536 similar to PIR|C84507|C84507 hypothetical protein At2g13... 476 e-134
TC92735 similar to PIR|C84507|C84507 hypothetical protein At2g13... 302 4e-95
TC80440 similar to PIR|C84507|C84507 hypothetical protein At2g13... 318 1e-86
AW695073 similar to GP|22831198|db putative chromodomain-helicas... 293 4e-79
TC91073 similar to PIR|T52301|T52301 GYMNOS/PICKLE protein [impo... 189 6e-48
BG645739 similar to PIR|T45808|T4 helicase-like protein - Arabid... 177 2e-44
TC80039 homologue to GP|6437558|gb|AAF08585.1| putative ATPase (... 177 4e-44
BG452179 homologue to GP|15528650|d putative DNA-dependent ATPas... 156 1e-42
BQ122721 similar to GP|8843733|dbj SWI2/SNF2-like protein {Arabi... 134 2e-31
TC84487 similar to PIR|T52301|T52301 GYMNOS/PICKLE protein [impo... 124 2e-28
BI311783 homologue to PIR|T47587|T4 TATA box binding protein (TB... 87 7e-17
BE205152 similar to GP|19347965|gb putative helicase {Arabidopsi... 84 5e-16
BG584027 similar to GP|10178052|db helicase-like transcription f... 81 3e-15
TC83002 similar to GP|14532630|gb|AAK64043.1 putative DNA-bindin... 75 2e-13
TC91548 similar to PIR|D86185|D86185 hypothetical protein [impor... 72 1e-12
TC85956 homologue to GP|8885593|dbj|BAA97523.1 1 4-benzoquinone ... 67 6e-11
TC84267 weakly similar to PIR|S41478|S41478 DNA repair protein r... 65 3e-10
TC90905 similar to PIR|H84432|H84432 probable helicase [imported... 62 1e-09
>TC90445 homologue to PIR|C84507|C84507 hypothetical protein At2g13370
[imported] - Arabidopsis thaliana, partial (29%)
Length = 1672
Score = 316 bits (809), Expect(4) = 0.0
Identities = 155/168 (92%), Positives = 162/168 (96%)
Frame = +2
Query: 624 ADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDLNVIVYVGT 683
ADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPD+N+IVYVGT
Sbjct: 41 ADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGT 220
Query: 684 RSSREVCQQYEFCNEKKAGKQIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNS 743
R+SREVCQQYEF N+KK GK IKFNALLTTYEV+LKDKAVLSKIKWNYLMVDEAHRLKNS
Sbjct: 221 RASREVCQQYEFYNDKKPGKPIKFNALLTTYEVILKDKAVLSKIKWNYLMVDEAHRLKNS 400
Query: 744 EAQLYTALSEFNTKNKLLITGTPLQNSVEELWALLHFLDSDKFKSKDE 791
EAQLYT+L EF+TKNKLLITGTPLQNSVEELWALLHFLD KFKSKDE
Sbjct: 401 EAQLYTSLLEFSTKNKLLITGTPLQNSVEELWALLHFLDPTKFKSKDE 544
Score = 257 bits (656), Expect(4) = 0.0
Identities = 130/140 (92%), Positives = 137/140 (97%)
Frame = +2
Query: 988 GLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEEDILERAK 1047
GLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQ++VVNIYRFVTSKSVEEDILERAK
Sbjct: 1160 GLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQDVVNIYRFVTSKSVEEDILERAK 1339
Query: 1048 KKMVLDHLVIQKLNAEGKLEKKEAKKGGSFFDKNELSAILRFGAEELFKEERNDEESKKR 1107
KKMVLDHLVIQKLNAEG+LEKKE KKGGS+FDKNELSAILRFGAEELFKEERNDEESKKR
Sbjct: 1340 KKMVLDHLVIQKLNAEGRLEKKEVKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKR 1519
Query: 1108 LLSMDIDEILERAEKVEEKE 1127
LL M+IDEILERAEKVE ++
Sbjct: 1520 LLGMNIDEILERAEKVEVED 1579
Score = 162 bits (409), Expect(4) = 0.0
Identities = 94/155 (60%), Positives = 109/155 (69%), Gaps = 3/155 (1%)
Frame = +3
Query: 787 KSKDEFAQNYKNLSSFNENELSNLHMELRPHMLRRVIKDVEKSLPPKIERIL---RVDMS 843
+++ +F QNYKNLSSF+ENEL+NLHMELRPH+LRRVIKDVEKSLPPKIERIL V S
Sbjct: 531 RARMKFVQNYKNLSSFHENELANLHMELRPHILRRVIKDVEKSLPPKIERIL*G*NVSSS 710
Query: 844 PLQKQYYKWILERNFRDLNKGVRGNQSKYCSRIEEVL*SSLLV*KC*PRLWWGL*K*RQQ 903
F+ + G SKYC R E+VL SL +*KC*P LWWGL +* QQ
Sbjct: 711 ETVL*VDFGT*LPKFKQRSSWESGFSSKYCGRTEKVLQPSLPI*KC*PWLWWGLWR**QQ 890
Query: 904 *T*ENCL*QWQACHTR*ATCQIA*NKASYSDFLSD 938
*T ENCL*QW+AC T *A+C IA N+A SDFL D
Sbjct: 891 *TRENCL*QWEACDT**ASC*IARNQAPRSDFLPD 995
Score = 102 bits (253), Expect(4) = 0.0
Identities = 48/50 (96%), Positives = 50/50 (100%)
Frame = +1
Query: 938 DILAQYMSLRGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAG 987
DILAQY+SLRGFQFQRLDGSTKSELRQQAM+HFNAPGSDDFCFLLSTRAG
Sbjct: 1009 DILAQYLSLRGFQFQRLDGSTKSELRQQAMEHFNAPGSDDFCFLLSTRAG 1158
Score = 49.7 bits (117), Expect = 1e-05
Identities = 23/38 (60%), Positives = 29/38 (75%)
Frame = +3
Query: 1117 LERAEKVEEKENGGEQAHELLSAFKVANFCNDEDDGSF 1154
L+ +++ K + EQ +ELLSAFKVANFCNDEDD SF
Sbjct: 1548 LKELRRLK*KTDEDEQGNELLSAFKVANFCNDEDDASF 1661
>TC84105 homologue to PIR|C84507|C84507 hypothetical protein At2g13370
[imported] - Arabidopsis thaliana, partial (15%)
Length = 834
Score = 498 bits (1282), Expect(2) = e-145
Identities = 253/254 (99%), Positives = 253/254 (99%)
Frame = +1
Query: 938 DILAQYMSLRGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATAD 997
DILAQYMSLRGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATAD
Sbjct: 73 DILAQYMSLRGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATAD 252
Query: 998 TVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEEDILERAKKKMVLDHLVI 1057
TVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEEDILERAKKKMVLDHLVI
Sbjct: 253 TVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEEDILERAKKKMVLDHLVI 432
Query: 1058 QKLNAEGKLEKKEAKKGGSFFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEIL 1117
QKLNAEGKLEKKEAKKGGSFFDKNELSAILRFGAEEL KEERNDEESKKRLLSMDIDEIL
Sbjct: 433 QKLNAEGKLEKKEAKKGGSFFDKNELSAILRFGAEELVKEERNDEESKKRLLSMDIDEIL 612
Query: 1118 ERAEKVEEKENGGEQAHELLSAFKVANFCNDEDDGSFWSRWIKADSVAQAENALAPRAAR 1177
ERAEKVEEKENGGEQAHELLSAFKVANFCNDEDDGSFWSRWIKADSVAQAENALAPRAAR
Sbjct: 613 ERAEKVEEKENGGEQAHELLSAFKVANFCNDEDDGSFWSRWIKADSVAQAENALAPRAAR 792
Query: 1178 NIKSYAEADQSERS 1191
NIKSYAEADQSERS
Sbjct: 793 NIKSYAEADQSERS 834
Score = 37.4 bits (85), Expect(2) = e-145
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +3
Query: 920 *ATCQIA*NKASYSDFLSD 938
*ATCQIA*NK SYSDFLSD
Sbjct: 3 *ATCQIA*NKVSYSDFLSD 59
>TC83536 similar to PIR|C84507|C84507 hypothetical protein At2g13370
[imported] - Arabidopsis thaliana, partial (11%)
Length = 736
Score = 476 bits (1226), Expect = e-134
Identities = 240/244 (98%), Positives = 240/244 (98%)
Frame = +3
Query: 1187 QSERSKKRKKKENEPTERIPKRRKADYSAHVISMIDGASAQVRSWSYGNLSKRDALRFSR 1246
QSERSKKRKKKENEPTERIPKRRKADYSAHVISMIDGASAQVRSWSYGNLSKRDALRFSR
Sbjct: 3 QSERSKKRKKKENEPTERIPKRRKADYSAHVISMIDGASAQVRSWSYGNLSKRDALRFSR 182
Query: 1247 SVMKFGNESQINLIVAEVGGAIEAAPLKAQVELFNALIDGCREAVEVGSLDLKGPLLDFY 1306
SVMKFGNESQINLIVAEVGGAIEAAPLKAQVELFNALIDGCREAVEVGSLDLKGPLLDFY
Sbjct: 183 SVMKFGNESQINLIVAEVGGAIEAAPLKAQVELFNALIDGCREAVEVGSLDLKGPLLDFY 362
Query: 1307 GVPMKANELLIRVQELQLLAKRISRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDARLLL 1366
GVPMKANELLIRVQELQLLAKRISRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDARLLL
Sbjct: 363 GVPMKANELLIRVQELQLLAKRISRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDARLLL 542
Query: 1367 GVHYHGYGNWEVIRLDERLGLTKKIAPVELQHHETFLPRAPNLRDRANALLEQELAVLGV 1426
GVHYHGYGNWEVIRLDERLGLTKKIAP EL HHETFLP APNL DRANALLEQELAVLGV
Sbjct: 543 GVHYHGYGNWEVIRLDERLGLTKKIAPXELXHHETFLPXAPNLXDRANALLEQELAVLGV 722
Query: 1427 KNAS 1430
KNAS
Sbjct: 723 KNAS 734
>TC92735 similar to PIR|C84507|C84507 hypothetical protein At2g13370
[imported] - Arabidopsis thaliana, partial (11%)
Length = 630
Score = 302 bits (774), Expect(2) = 4e-95
Identities = 142/169 (84%), Positives = 161/169 (95%)
Frame = +2
Query: 1252 GNESQINLIVAEVGGAIEAAPLKAQVELFNALIDGCREAVEVGSLDLKGPLLDFYGVPMK 1311
GNE+QI+LI A+VGGA+ AAP +AQ+ELFNALIDGC EAVE+G+LD KGP+LDF+GVP+K
Sbjct: 122 GNENQIDLIAADVGGAVAAAPPEAQIELFNALIDGCSEAVEIGNLDTKGPVLDFFGVPVK 301
Query: 1312 ANELLIRVQELQLLAKRISRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDARLLLGVHYH 1371
AN+L+ RVQELQLLAKRISRYEDP+AQFRVL+YLKPSNWSKGCGWNQIDDARLLLG+HYH
Sbjct: 302 ANDLVTRVQELQLLAKRISRYEDPLAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYH 481
Query: 1372 GYGNWEVIRLDERLGLTKKIAPVELQHHETFLPRAPNLRDRANALLEQE 1420
G+GNWE+IRLDERLGL KKIAPVELQ+HETFLPRAPNLRDR NALLEQE
Sbjct: 482 GFGNWEMIRLDERLGLMKKIAPVELQNHETFLPRAPNLRDRTNALLEQE 628
Score = 66.2 bits (160), Expect(2) = 4e-95
Identities = 30/39 (76%), Positives = 35/39 (88%)
Frame = +1
Query: 1213 YSAHVISMIDGASAQVRSWSYGNLSKRDALRFSRSVMKF 1251
+SA + M+DGAS QVRSWSYGNLSKRDALRFSR+VMK+
Sbjct: 4 HSAPAVPMVDGASVQVRSWSYGNLSKRDALRFSRAVMKY 120
>TC80440 similar to PIR|C84507|C84507 hypothetical protein At2g13370
[imported] - Arabidopsis thaliana, partial (7%)
Length = 1228
Score = 318 bits (814), Expect = 1e-86
Identities = 171/238 (71%), Positives = 187/238 (77%), Gaps = 2/238 (0%)
Frame = +2
Query: 1494 SDDDDVYEQFKEGKWKEWCQDLMVEEMKTLKRLHRLQTTSASLPKEKVLSKIRNYLQLLG 1553
SD+++VYEQFKE KW EWCQD+MVEEMKTLKRLHRLQTTSA+LPKEKVLSKIRNYLQLLG
Sbjct: 2 SDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLG 181
Query: 1554 RRIDQIVSEQEDEPHKQDRMTTRLWKYVSTFSHLSGERLHQIYSKLKLEQ-NAVGVGSSL 1612
RRIDQIVSE E EP+KQDRMT RLWKYVSTFSHLSGERLHQIYSKLK EQ + GVG
Sbjct: 182 RRIDQIVSENEVEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQEDDSGVGP-- 355
Query: 1613 PNGSVSGPFSRNGNPNSSFPRPMERQTRFQNVTAHPMREQTYDTGMSEAWKRRRRAENDG 1672
S FSRNGNP F R MERQ F+N+ + M E +TG SEAWKRRRRAE++
Sbjct: 356 -----SASFSRNGNP---FHRHMERQRGFKNMANYQMSEPDNNTGKSEAWKRRRRAESED 511
Query: 1673 CFQGQPPPQRITSNGIRPLDPNSLGILGAGPS-QCFSGEKLLKTQPAGSPSRQEFSLG 1729
FQGQPPPQR +SNGIR DPNSLGILGAGPS + EK +TQP G PS Q FS G
Sbjct: 512 HFQGQPPPQRTSSNGIRITDPNSLGILGAGPSDKRLVSEKPFRTQPGGFPSSQGFS*G 685
>AW695073 similar to GP|22831198|db putative
chromodomain-helicase-DNA-binding protein {Oryza sativa
(japonica cultivar-group)}, partial (2%)
Length = 449
Score = 293 bits (750), Expect(2) = 4e-79
Identities = 139/140 (99%), Positives = 139/140 (99%)
Frame = +2
Query: 131 DGQKDSGKGQRGDSDVPAEEMLSDDSYGQDGEEQGESVHSRGFRPSTGSNSCLQPTSTNV 190
DGQKDSGKGQRGDSDVPAEEMLSDDSYGQDGEEQGESVHSRGFRPSTGSNSCLQPTSTNV
Sbjct: 2 DGQKDSGKGQRGDSDVPAEEMLSDDSYGQDGEEQGESVHSRGFRPSTGSNSCLQPTSTNV 181
Query: 191 NRRVHRKSRILDDAEDDDDDADYEEDEPDEDDPDDADFEPATSGRGANKYKDWEGEDSDE 250
NRRVHRKSRILDDAEDDDDDADYEEDEPDEDDPDDADFEPATSGRGANKYKDWEGEDSDE
Sbjct: 182 NRRVHRKSRILDDAEDDDDDADYEEDEPDEDDPDDADFEPATSGRGANKYKDWEGEDSDE 361
Query: 251 VDDSDEDIDVSDNDDLYFDK 270
VDDSDEDI VSDNDDLYFDK
Sbjct: 362 VDDSDEDIHVSDNDDLYFDK 421
Score = 22.3 bits (46), Expect(2) = 4e-79
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3
Query: 271 KAKGRQRGK 279
KAKGRQRGK
Sbjct: 423 KAKGRQRGK 449
>TC91073 similar to PIR|T52301|T52301 GYMNOS/PICKLE protein [imported] -
Arabidopsis thaliana, partial (14%)
Length = 627
Score = 189 bits (481), Expect = 6e-48
Identities = 94/209 (44%), Positives = 140/209 (66%), Gaps = 14/209 (6%)
Frame = +3
Query: 622 VLADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDLNVIVYV 681
+LADEMGLGKT+QS++ L L P LVV PLSTL NW +EF W P +NVI+YV
Sbjct: 3 ILADEMGLGKTIQSIAFLASLFEEGVSAHPHLVVAPLSTLRNWEREFATWAPQMNVIMYV 182
Query: 682 GTRSSREVCQQYEFCNEKKAGK--------------QIKFNALLTTYEVVLKDKAVLSKI 727
G+ +R V ++YEF KK K +IKF+ LLT+YE++ D L I
Sbjct: 183 GSAQARSVIREYEFYFPKKLKKNKKKKSLVSESKHDRIKFDVLLTSYEMINLDTTSLKPI 362
Query: 728 KWNYLMVDEAHRLKNSEAQLYTALSEFNTKNKLLITGTPLQNSVEELWALLHFLDSDKFK 787
KW ++VDE HRLKN +++L+++L +++T++++L+TGTPLQN+++EL+ L+HFLD+ KF
Sbjct: 363 KWECMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFA 542
Query: 788 SKDEFAQNYKNLSSFNENELSNLHMELRP 816
S +EF + +K+++ E ++S LH L P
Sbjct: 543 SLEEFQEEFKDIN--QEEQISKLHKMLAP 623
>BG645739 similar to PIR|T45808|T4 helicase-like protein - Arabidopsis
thaliana, partial (17%)
Length = 818
Score = 177 bits (450), Expect = 2e-44
Identities = 93/241 (38%), Positives = 149/241 (61%), Gaps = 9/241 (3%)
Frame = +2
Query: 622 VLADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDLNVIVYV 681
+LADEMGLGKT+Q++ L L + I GPFL+V P S L+NW +E ++ P+L V+ Y
Sbjct: 2 ILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLIVAPASVLNNWNEELERFCPELKVLPYW 181
Query: 682 GTRSSREVCQQYEFCNEKKA-GKQIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRL 740
G S R V ++ N K ++ KF+ L+T+Y++++ D+ ++KW Y+++DEA +
Sbjct: 182 GGLSERTVLRKS--MNPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAI 355
Query: 741 KNSEAQLYTALSEFNTKNKLLITGTPLQNSVEELWALLHFLDSDKFKSKDEFAQ------ 794
K+S + + L FN +N+LL+TGTP+QN++ ELWALLHF+ F S ++F +
Sbjct: 356 KSSNSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGI 535
Query: 795 --NYKNLSSFNENELSNLHMELRPHMLRRVIKDVEKSLPPKIERILRVDMSPLQKQYYKW 852
+ ++ + NE++L+ LH ++P MLRRV KDV L K E + +S Q+ +Y
Sbjct: 536 ENHAEHGGTLNEHQLNRLHSIIKPFMLRRVKKDVVSELTSKTEITVHCKLSSRQQAFYSS 715
Query: 853 I 853
I
Sbjct: 716 I 718
>TC80039 homologue to GP|6437558|gb|AAF08585.1| putative ATPase (ISW2-like)
{Arabidopsis thaliana}, partial (47%)
Length = 1840
Score = 177 bits (448), Expect = 4e-44
Identities = 114/293 (38%), Positives = 173/293 (58%), Gaps = 7/293 (2%)
Frame = +1
Query: 579 RQSKGSL--RKLDEQPEWLKGGKLRDYQLEGLNFLVNSWKNDTNVVLADEMGLGKTVQSV 636
++ +G L +L QP ++G K+RDYQL GLN+L+ ++N N +LADEMGLGKT+Q++
Sbjct: 574 KEEEGGLGNTRLVTQPSCIQG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI 750
Query: 637 SMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDLNVIVYVGTRSSREVCQQYEFC 696
S+LG+L + I GP +VV P STL NW E R++ P L + ++G+ R+ ++
Sbjct: 751 SLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGSPDERKHIKEELLV 930
Query: 697 NEKKAGKQIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTALSEFNT 756
AG KF+ +T++E+V+K+K I + K E L +
Sbjct: 931 ----AG---KFDVCVTSFEMVIKEKPTFPSI*LALCYY**SPSDKK*E--LPPVQNNEGI 1083
Query: 757 KNKL---LITGTPLQNSVEELWALLHFLDSDKFKSKDEFAQNYKNLSSFNENE--LSNLH 811
NKL L PLQN++ ELW+LL+FL + F S + F + ++ +S N+ + + LH
Sbjct: 1084*NKLPDSL*LAHPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQ-ISGENDQQEVVQQLH 1260
Query: 812 MELRPHMLRRVIKDVEKSLPPKIERILRVDMSPLQKQYYKWILERNFRDLNKG 864
LRP +LRR+ DVEK LPPK E IL+V MS +QKQYYK +L+++ +N G
Sbjct: 1261KVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAG 1419
Score = 81.6 bits (200), Expect = 2e-15
Identities = 39/66 (59%), Positives = 50/66 (75%)
Frame = +1
Query: 936 LSDILAQYMSLRGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLAT 995
L DIL Y+ RG+Q+ R+DG+T + R +++ FN PGS+ F FLLSTRAGGLGINLAT
Sbjct: 1630 LLDILEDYLMFRGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLAT 1809
Query: 996 ADTVII 1001
AD VI+
Sbjct: 1810 ADVVIL 1827
>BG452179 homologue to GP|15528650|d putative DNA-dependent ATPase {Oryza
sativa (japonica cultivar-group)}, partial (19%)
Length = 667
Score = 156 bits (395), Expect(2) = 1e-42
Identities = 85/207 (41%), Positives = 128/207 (61%), Gaps = 2/207 (0%)
Frame = +3
Query: 642 LQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDLNVIVYVGTRSSREVCQQYEFCNEKKA 701
L + I GP +VV P STL NW E R++ P L + ++G R ++ + A
Sbjct: 69 LHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPEERRHIRE----DLLVA 236
Query: 702 GKQIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTALSEFNTKNKLL 761
GK F+ +T++E+ +K+K+ L + W Y+++DEAHR+KN + L + +NT +LL
Sbjct: 237 GK---FDVCVTSFEMAIKEKSTLRRFSWRYIIIDEAHRIKNENSLLSKTMRIYNTNYRLL 407
Query: 762 ITGTPLQNSVEELWALLHFLDSDKFKSKDEFAQNYKNLSSFNENE--LSNLHMELRPHML 819
ITGTPLQN++ ELW+LL+FL + F S + F + ++ +S N+ + + LH LRP +L
Sbjct: 408 ITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQ-ISGENDQQEVVQQLHKVLRPFLL 584
Query: 820 RRVIKDVEKSLPPKIERILRVDMSPLQ 846
RR+ DVEK LPPK E IL+V MS LQ
Sbjct: 585 RRLKSDVEKGLPPKKETILKVGMSQLQ 665
Score = 37.0 bits (84), Expect(2) = 1e-42
Identities = 15/28 (53%), Positives = 23/28 (81%)
Frame = +2
Query: 620 NVVLADEMGLGKTVQSVSMLGFLQNAQQ 647
N +LADEMGLGKT+Q++S++G+ Q+
Sbjct: 2 NGILADEMGLGKTLQTISLMGYFA*VQR 85
>BQ122721 similar to GP|8843733|dbj SWI2/SNF2-like protein {Arabidopsis
thaliana}, partial (19%)
Length = 650
Score = 134 bits (338), Expect = 2e-31
Identities = 74/156 (47%), Positives = 102/156 (64%)
Frame = +1
Query: 938 DILAQYMSLRGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATAD 997
DI+ Y S +GF+ R+DGS K + R++ + FN S+ FLLSTRAGGLGINL AD
Sbjct: 55 DIMDYYFSEKGFEVCRIDGSVKLDDRKRQIQDFNDTTSNCRIFLLSTRAGGLGINLTAAD 234
Query: 998 TVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEEDILERAKKKMVLDHLVI 1057
T I++DSDWNPQ DLQAM R HRIGQ + V++YR T++SVE +L+RA K+ L+H+VI
Sbjct: 235 TCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVI 414
Query: 1058 QKLNAEGKLEKKEAKKGGSFFDKNELSAILRFGAEE 1093
+K G+ ++ K S D+ E +L +E
Sbjct: 415 EK----GQFHQERTKP--SIMDEMEEEDVLALLRDE 504
>TC84487 similar to PIR|T52301|T52301 GYMNOS/PICKLE protein [imported] -
Arabidopsis thaliana, partial (14%)
Length = 612
Score = 124 bits (312), Expect = 2e-28
Identities = 61/110 (55%), Positives = 77/110 (69%), Gaps = 2/110 (1%)
Frame = +3
Query: 932 YSDF--LSDILAQYMSLRGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGL 989
YS F + D+L Y S + + ++R+DG RQ +D FNA S FCFLLSTRAGGL
Sbjct: 282 YSQFQHMLDLLEDYCSYKKWHYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGL 461
Query: 990 GINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVE 1039
GINLATADTV+I+D DWNP DLQAM+RAHR+GQ V IY+ +T ++E
Sbjct: 462 GINLATADTVVIYDRDWNPHADLQAMARAHRLGQTNKVLIYKLITRGTIE 611
Score = 30.8 bits (68), Expect = 4.8
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 839 RVDMSPLQKQYYKWILERNFRDLNK 863
RVD S QK+YYK IL RN++ L +
Sbjct: 2 RVDSSSKQKEYYKAILTRNYQILTR 76
>BI311783 homologue to PIR|T47587|T4 TATA box binding protein (TBP) associated
factor (TAF)-like protein - Arabidopsis thaliana, partial
(6%)
Length = 788
Score = 86.7 bits (213), Expect = 7e-17
Identities = 39/85 (45%), Positives = 59/85 (68%)
Frame = +2
Query: 981 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEE 1040
LL+T GGLG+NL +ADT++ + DWNP DLQAM RAHR+GQ++VVN++R + ++EE
Sbjct: 5 LLTTHVGGLGLNLTSADTLVFVEHDWNPMRDLQAMDRAHRLGQKKVVNVHRLIMRGTLEE 184
Query: 1041 DILERAKKKMVLDHLVIQKLNAEGK 1065
++ + K+ + + VI NA K
Sbjct: 185 KVMSLQRFKVSVANAVINAENASLK 259
>BE205152 similar to GP|19347965|gb putative helicase {Arabidopsis thaliana},
partial (27%)
Length = 626
Score = 84.0 bits (206), Expect = 5e-16
Identities = 45/78 (57%), Positives = 54/78 (68%)
Frame = +1
Query: 938 DILAQYMSLRGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATAD 997
+IL YM+ R +++ RLDGST R+ + F SD F FLLSTRAGGLGINL AD
Sbjct: 391 NILEDYMNYRKYKYCRLDGSTSIHDRRDMVRDFQHR-SDIFVFLLSTRAGGLGINLTAAD 567
Query: 998 TVIIFDSDWNPQNDLQAM 1015
TVI ++SDWNP DLQAM
Sbjct: 568 TVIFYESDWNPTLDLQAM 621
>BG584027 similar to GP|10178052|db helicase-like transcription factor-like
protein {Arabidopsis thaliana}, partial (15%)
Length = 830
Score = 81.3 bits (199), Expect = 3e-15
Identities = 47/125 (37%), Positives = 68/125 (53%), Gaps = 3/125 (2%)
Frame = +3
Query: 939 ILAQYMSLRGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLL-STRAGGLGINLATAD 997
+L + + GF+ RLDG+ ++ R Q ++ F D+ LL S RA GINL A
Sbjct: 300 LLEEPLKAAGFKTLRLDGTMNAKQRAQVIEQFQLSEVDEPMILLASLRASSTGINLTAAS 479
Query: 998 TVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEEDI--LERAKKKMVLDHL 1055
V + + WNP + QAM R HRIGQ+E V I R + S+EE I L+ KKK +
Sbjct: 480 RVYLMEPWWNPAVEEQAMDRVHRIGQKEEVKIVRLIAKNSIEEKILMLQEKKKKTITSPR 659
Query: 1056 VIQKL 1060
+ +K+
Sbjct: 660 IWKKI 674
>TC83002 similar to GP|14532630|gb|AAK64043.1 putative DNA-binding protein
{Arabidopsis thaliana}, partial (18%)
Length = 1088
Score = 75.5 bits (184), Expect = 2e-13
Identities = 44/116 (37%), Positives = 64/116 (54%), Gaps = 2/116 (1%)
Frame = +3
Query: 938 DILAQYMSLRGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATAD 997
D++ M G +++RLDG R +A+ FN + L+S +AG LG+N+ A
Sbjct: 489 DLVETSMEQSGVKYRRLDGRMTLTARDRAVKDFNTD-PEITVMLMSLKAGNLGLNMVAAC 665
Query: 998 TVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEEDI--LERAKKKMV 1051
VI+ D WNP + QA+ RAHRIGQ V + R +VE+ I L+ K+KMV
Sbjct: 666 HVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKRKMV 833
>TC91548 similar to PIR|D86185|D86185 hypothetical protein [imported] -
Arabidopsis thaliana, complete
Length = 611
Score = 72.4 bits (176), Expect = 1e-12
Identities = 47/123 (38%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Frame = +2
Query: 953 RLDGSTKSELRQQAMDHFNAPGSDDFC--FLLSTRAGGLGINLATADTVIIFDSDWNPQN 1010
+L GS R A+ F D C FL+S +AGG+ +NL A V + D WNP
Sbjct: 5 QLVGSMTLTARDNAIKKFT---DDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAV 175
Query: 1011 DLQAMSRAHRIGQREVVNIYRFVTSKSVEEDILE-RAKKKMVLDHLVIQKLNAEGKLEKK 1069
+ QA R HRIGQ + + I RFV ++EE IL+ + KK++V + V A GKL
Sbjct: 176 ERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGAVGGSSEALGKLTVA 355
Query: 1070 EAK 1072
+ K
Sbjct: 356 DLK 364
>TC85956 homologue to GP|8885593|dbj|BAA97523.1 1 4-benzoquinone
reductase-like; Trp repressor binding protein-like
{Arabidopsis thaliana}, partial (98%)
Length = 1976
Score = 67.0 bits (162), Expect = 6e-11
Identities = 39/117 (33%), Positives = 60/117 (50%)
Frame = +1
Query: 947 RGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDW 1006
+G + L G + R + MD F PG L S A GI+L A VI+ DS+W
Sbjct: 226 KGREVLVLTGELELFERGKIMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEW 405
Query: 1007 NPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAE 1063
NP QA++RA R GQ+++V +Y+ + + S+EED R K + ++ + E
Sbjct: 406 NPSKTKQAIARAFRPGQQKMVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVE 576
>TC84267 weakly similar to PIR|S41478|S41478 DNA repair protein rad8 - fission
yeast (Schizosaccharomyces pombe), partial (5%)
Length = 751
Score = 64.7 bits (156), Expect = 3e-10
Identities = 35/111 (31%), Positives = 58/111 (51%)
Frame = +2
Query: 939 ILAQYMSLRGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADT 998
++ +Y+ G + R+DG RQ + F A G D +++T G G+NL A+
Sbjct: 173 LVERYLRAAGIEHLRIDGDCSLPERQARLKQF-ADGDDKRVLIMTTGTGAFGLNLTCANR 349
Query: 999 VIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEEDILERAKKK 1049
V I + WNP + QA++RA R+GQ V + R+V +VE ++ + K
Sbjct: 350 VFIVELQWNPSVENQAIARAIRLGQGREVLVTRYVMRDTVEVEMSSQQSHK 502
>TC90905 similar to PIR|H84432|H84432 probable helicase [imported] -
Arabidopsis thaliana, partial (20%)
Length = 904
Score = 62.4 bits (150), Expect = 1e-09
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Frame = +2
Query: 600 LRDYQLEGLNFLVNSW-KNDTNVVLADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPL 658
L+ YQL G+NFL+ + K +LADEMGLGKTVQ+++ L L + GP L+V P
Sbjct: 701 LKPYQLVGVNFLLLLYRKRIGGAILADEMGLGKTVQAITYLTLLNHLHNDSGPHLIVCPA 880
Query: 659 STLSNWAK 666
S L NW +
Sbjct: 881 SVLENWER 904
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.316 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,528,292
Number of Sequences: 36976
Number of extensions: 590668
Number of successful extensions: 5485
Number of sequences better than 10.0: 203
Number of HSP's better than 10.0 without gapping: 4056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4838
length of query: 1730
length of database: 9,014,727
effective HSP length: 110
effective length of query: 1620
effective length of database: 4,947,367
effective search space: 8014734540
effective search space used: 8014734540
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Medicago: description of AC141111.7