BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141111.6 - phase: 0 /pseudo
(379 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC76779 similar to GP|18032028|gb|AAL47679.1 aminotransferase 1 ... 717 0.0
AW584681 similar to GP|18032028|gb aminotransferase 1 {Cucumis m... 382 e-106
TC76778 homologue to GP|18158221|gb|AAL62332.1 aminotransferase ... 146 1e-35
BF006115 similar to GP|18158221|gb| aminotransferase 2 {Cucumis ... 42 3e-04
TC87702 weakly similar to SP|O48923|C7DA_SOYBN Cytochrome P450 7... 32 0.40
BE204028 similar to GP|8953386|emb| putative protein {Arabidopsi... 29 2.6
>TC76779 similar to GP|18032028|gb|AAL47679.1 aminotransferase 1 {Cucumis
melo}, complete
Length = 1491
Score = 717 bits (1852), Expect(2) = 0.0
Identities = 356/356 (100%), Positives = 356/356 (100%)
Frame = +3
Query: 1 MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKTLLEDVKKIFKTTTG 60
MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKTLLEDVKKIFKTTTG
Sbjct: 129 MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKTLLEDVKKIFKTTTG 308
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIVSFVIGQFSLLWVDQQQRLKFNVDVVESEWGRG 120
TPFLIPTTGTGAWESALTNTLSPGDRIVSFVIGQFSLLWVDQQQRLKFNVDVVESEWGRG
Sbjct: 309 TPFLIPTTGTGAWESALTNTLSPGDRIVSFVIGQFSLLWVDQQQRLKFNVDVVESEWGRG 488
Query: 121 ADLDILESKLASDSAHTIKAICIVHNETATGVTNNLAKVRQLLDAYQHPALLLVDGVSSI 180
ADLDILESKLASDSAHTIKAICIVHNETATGVTNNLAKVRQLLDAYQHPALLLVDGVSSI
Sbjct: 489 ADLDILESKLASDSAHTIKAICIVHNETATGVTNNLAKVRQLLDAYQHPALLLVDGVSSI 668
Query: 181 CALDFRMDEWGVDVAITGSQKALSLPTGIGFVVASPKAIEASKSAKSLRVFFDWSDYLKF 240
CALDFRMDEWGVDVAITGSQKALSLPTGIGFVVASPKAIEASKSAKSLRVFFDWSDYLKF
Sbjct: 669 CALDFRMDEWGVDVAITGSQKALSLPTGIGFVVASPKAIEASKSAKSLRVFFDWSDYLKF 848
Query: 241 YKMGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHNRLGTATRLAVEAWGLKNCTQE 300
YKMGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHNRLGTATRLAVEAWGLKNCTQE
Sbjct: 849 YKMGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHNRLGTATRLAVEAWGLKNCTQE 1028
Query: 301 EEWFSDTVTAVVVPPYIDGAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNE 356
EEWFSDTVTAVVVPPYIDGAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNE
Sbjct: 1029EEWFSDTVTAVVVPPYIDGAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNE 1196
Score = 50.1 bits (118), Expect(2) = 0.0
Identities = 23/24 (95%), Positives = 24/24 (99%)
Frame = +1
Query: 356 E*NWEVELLLPVHTYRTIFLSSLQ 379
+*NWEVELLLPVHTYRTIFLSSLQ
Sbjct: 1255 Q*NWEVELLLPVHTYRTIFLSSLQ 1326
>AW584681 similar to GP|18032028|gb aminotransferase 1 {Cucumis melo},
partial (57%)
Length = 704
Score = 382 bits (980), Expect = e-106
Identities = 184/230 (80%), Positives = 205/230 (89%)
Frame = +1
Query: 28 MSRNNEDYRSPAIPALTKTLLEDVKKIFKTTTGTPFLIPTTGTGAWESALTNTLSPGDRI 87
M+RNNE++R+PAI LTKTLL+DVKKIFKTT+G PFLIPTTGTGAWESALTNTLSPGDR
Sbjct: 13 MNRNNENHRTPAITTLTKTLLDDVKKIFKTTSGIPFLIPTTGTGAWESALTNTLSPGDRT 192
Query: 88 VSFVIGQFSLLWVDQQQRLKFNVDVVESEWGRGADLDILESKLASDSAHTIKAICIVHNE 147
VSF+IGQFSLLW++QQ+RL F VDVVESEWG+GADLD LESKLASD HTIKAICIVHNE
Sbjct: 193 VSFLIGQFSLLWIEQQKRLNFKVDVVESEWGQGADLDALESKLASDKTHTIKAICIVHNE 372
Query: 148 TATGVTNNLAKVRQLLDAYQHPALLLVDGVSSICALDFRMDEWGVDVAITGSQKALSLPT 207
T TGVTN L KVR++LD YQHPAL++VD VSSI ALDFRMDEWGVDV +T SQKALSLPT
Sbjct: 373 TTTGVTNYLTKVRKILDKYQHPALIIVDAVSSIGALDFRMDEWGVDVVVTSSQKALSLPT 552
Query: 208 GIGFVVASPKAIEASKSAKSLRVFFDWSDYLKFYKMGTYWPYTPSIQLLY 257
G+G V A PKAIEA+KSA S+R FFDW+ YLK Y +GTYWPYTPSIQLLY
Sbjct: 553 GMGIVCAGPKAIEATKSATSVRSFFDWNGYLKCYNLGTYWPYTPSIQLLY 702
>TC76778 homologue to GP|18158221|gb|AAL62332.1 aminotransferase 2 {Cucumis
melo}, partial (28%)
Length = 1210
Score = 146 bits (369), Expect = 1e-35
Identities = 78/103 (75%), Positives = 83/103 (79%), Gaps = 12/103 (11%)
Frame = +1
Query: 288 AVEAWGLKNCTQEEEWFSDTVTAVVVPPYIDGAEIVRRAWKRYNLSLGLGLNKVAGKVFR 347
AVEAWGLKNCTQEEEWFSDTVTAVVVPPYIDGAEIVRRAWKRYNLSLGLGLNKVAGKVFR
Sbjct: 7 AVEAWGLKNCTQEEEWFSDTVTAVVVPPYIDGAEIVRRAWKRYNLSLGLGLNKVAGKVFR 186
Query: 348 IGHLGNLNE-------*NWEVELLLPVHT-----YRTIFLSSL 378
IGHLGNLNE N V LLL + +R I+L+S+
Sbjct: 187 IGHLGNLNEVTLIPQTFNSYVALLLEIGAASSVRHRYIYLTSI 315
Score = 50.1 bits (118), Expect = 1e-06
Identities = 23/24 (95%), Positives = 24/24 (99%)
Frame = +2
Query: 356 E*NWEVELLLPVHTYRTIFLSSLQ 379
+*NWEVELLLPVHTYRTIFLSSLQ
Sbjct: 797 Q*NWEVELLLPVHTYRTIFLSSLQ 868
>BF006115 similar to GP|18158221|gb| aminotransferase 2 {Cucumis melo},
partial (7%)
Length = 190
Score = 42.4 bits (98), Expect = 3e-04
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = -3
Query: 358 NWEVELLLPVHTYRTIFLSSLQ 379
NWEVELLL V TYRTIFLSSLQ
Sbjct: 173 NWEVELLLAVKTYRTIFLSSLQ 108
>TC87702 weakly similar to SP|O48923|C7DA_SOYBN Cytochrome P450 71D10 (EC
1.14.-.-). [Soybean] {Glycine max}, partial (51%)
Length = 1732
Score = 32.0 bits (71), Expect = 0.40
Identities = 24/97 (24%), Positives = 40/97 (40%), Gaps = 3/97 (3%)
Frame = +1
Query: 199 SQKALSLPTGIGFVVASPKAIEASKSAKSLRVFFDWSDYLKFYKMGTYWPYTPSIQLLYG 258
S+K SL G+ A +E K ++ D + + +P +Q+L G
Sbjct: 544 SEKLDSLAYGLTSRTAFGANVEDEDKEKYRKIIKDVLKVAGGFSLADLYPSIRILQVLTG 723
Query: 259 LRAALDLIFEEG---LENIIARHNRLGTATRLAVEAW 292
LR ++ + E LENI+ H + T+ E W
Sbjct: 724 LRQRIEKLHGETDKILENIVRSHRKKNLETKAKEEKW 834
>BE204028 similar to GP|8953386|emb| putative protein {Arabidopsis thaliana},
partial (16%)
Length = 462
Score = 29.3 bits (64), Expect = 2.6
Identities = 15/51 (29%), Positives = 21/51 (40%), Gaps = 12/51 (23%)
Frame = +3
Query: 225 AKSLRVFFDWSDYLKFYKMGT------------YWPYTPSIQLLYGLRAAL 263
+ L VF WS L F +G +WPY + ++YGL L
Sbjct: 252 SSQLAVFLQWSTLLSFLIVGVLIKGNMMRLAYVFWPYQKLVFVIYGLEIVL 404
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,524,465
Number of Sequences: 36976
Number of extensions: 149039
Number of successful extensions: 520
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of query: 379
length of database: 9,014,727
effective HSP length: 98
effective length of query: 281
effective length of database: 5,391,079
effective search space: 1514893199
effective search space used: 1514893199
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Medicago: description of AC141111.6