BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141110.1 + phase: 0 /pseudo
(143 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF649643 similar to PIR|H86486|H86 protein Ty1/copia-element pol... 30 0.33
AW691018 weakly similar to GP|2462935|em open reading frame 1 {B... 28 0.96
BQ122188 weakly similar to GP|9758772|dbj| contains similarity t... 28 0.96
TC80338 weakly similar to GP|20127018|gb|AAM10936.1 putative bHL... 28 1.6
TC81073 similar to PIR|G96787|G96787 protein T4O12.9 [imported] ... 27 2.1
TC79250 similar to PIR|T06329|T06329 symbiotic ammonium transpor... 27 3.6
BF648150 similar to GP|14586969|gb| pol polyprotein {Citrus x pa... 26 4.7
TC91908 similar to PIR|C84540|C84540 probable CDC21 protein [imp... 26 4.7
TC84751 26 6.2
TC88519 similar to PIR|C86437|C86437 hypothetical protein AAD216... 26 6.2
AL371428 25 8.1
BG585889 weakly similar to SP|Q40287|UFO5_ Flavonol 3-O-glucosyl... 25 8.1
TC85624 homologue to SP|P26969|GCSP_PEA Glycine dehydrogenase [d... 25 8.1
>BF649643 similar to PIR|H86486|H86 protein Ty1/copia-element polyprotein
[imported] - Arabidopsis thaliana, partial (2%)
Length = 608
Score = 30.0 bits (66), Expect = 0.33
Identities = 33/120 (27%), Positives = 53/120 (43%), Gaps = 3/120 (2%)
Frame = +1
Query: 13 LIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPI--PEAPPAGASAALRNAHAKHLND 70
L+ KL TN+ WSR+M LT + K+ ++G I P A AL N
Sbjct: 157 LLVPTKLNGTNYSSWSRSMVHALTAKNKVGFINGSIKTPSEVDQPAEYALWN------RC 318
Query: 71 SVEVSCIMLASMTPELQK-QHEGMTAFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEG 129
+ + + S+ P+L K TA + E K + ++ + + K+L S LS+G
Sbjct: 319 NSMILSWLTHSVEPDLAKGVIHAKTACQVWEDFKDQFSQKNIPAIYQIQKSLAS--LSQG 492
>AW691018 weakly similar to GP|2462935|em open reading frame 1 {Brassica
oleracea}, partial (12%)
Length = 639
Score = 28.5 bits (62), Expect = 0.96
Identities = 14/38 (36%), Positives = 25/38 (64%)
Frame = +2
Query: 17 EKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPA 54
+ L N+ +WSR+M + L+ + KL ++DG + +AP A
Sbjct: 203 QPLNGGNYGEWSRSMLLSLSAKNKLGLIDGTV-KAPSA 313
>BQ122188 weakly similar to GP|9758772|dbj| contains similarity to
retroelement pol polyprotein~gene_id:MNJ7.3 {Arabidopsis
thaliana}, partial (7%)
Length = 708
Score = 28.5 bits (62), Expect = 0.96
Identities = 11/24 (45%), Positives = 16/24 (65%)
Frame = -3
Query: 23 NFIDWSRNMRIVLTHEKKLYVLDG 46
NF W R+MR+ LT + K+ +DG
Sbjct: 124 NFQSWIRSMRLALTSKNKIAFVDG 53
>TC80338 weakly similar to GP|20127018|gb|AAM10936.1 putative bHLH
transcription factor {Arabidopsis thaliana}, partial
(15%)
Length = 1128
Score = 27.7 bits (60), Expect = 1.6
Identities = 14/38 (36%), Positives = 20/38 (51%)
Frame = -2
Query: 95 AFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEGGPV 132
AF MIE ++ F++S +LFS LS G P+
Sbjct: 407 AFSMIEISSIFFKPITSESSFNISFSLFSFVLSVGSPI 294
>TC81073 similar to PIR|G96787|G96787 protein T4O12.9 [imported] -
Arabidopsis thaliana, partial (29%)
Length = 993
Score = 27.3 bits (59), Expect = 2.1
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +2
Query: 67 HLNDSVEVSCIMLASMTPELQKQHEG----MTAFDMIEHLKTLYEEQARH 112
+L DS++ S ML+ + H+ M AFD + L+ +++++RH
Sbjct: 260 NLRDSLKYSAQMLSELRTSRLSPHKYYELYMRAFDELRRLEMFFKDESRH 409
>TC79250 similar to PIR|T06329|T06329 symbiotic ammonium transport protein
SAT1 - soybean, partial (34%)
Length = 1145
Score = 26.6 bits (57), Expect = 3.6
Identities = 15/56 (26%), Positives = 27/56 (47%), Gaps = 5/56 (8%)
Frame = +2
Query: 58 AALRNAH-----AKHLNDSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEE 108
+A RNA + + + I L+++ P+L+K + D I H+K L E+
Sbjct: 488 SAARNAQDHIIAERKRREKISQKFIALSALLPDLKKMDKASVLGDAINHVKQLQEK 655
>BF648150 similar to GP|14586969|gb| pol polyprotein {Citrus x paradisi},
partial (3%)
Length = 658
Score = 26.2 bits (56), Expect = 4.7
Identities = 11/29 (37%), Positives = 16/29 (54%)
Frame = +1
Query: 14 IEKEKLTETNFIDWSRNMRIVLTHEKKLY 42
++ EK NFI W + M+ +LT K Y
Sbjct: 22 VKLEKFNGGNFIRWQKKMKFLLTTLKVAY 108
>TC91908 similar to PIR|C84540|C84540 probable CDC21 protein [imported] -
Arabidopsis thaliana, partial (6%)
Length = 526
Score = 26.2 bits (56), Expect = 4.7
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 33 IVLTHEKKLYVLDGPIPEAPPAGASAALRNAHAKHLN 69
+VL H + P P PPA +A ++ H + LN
Sbjct: 44 MVLLHRTTPIQVQSPTPTPPPAAVAAVNQSLHLELLN 154
>TC84751
Length = 502
Score = 25.8 bits (55), Expect = 6.2
Identities = 15/43 (34%), Positives = 26/43 (59%)
Frame = -3
Query: 10 LRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAP 52
L+ + +K+ E+N + +R R +T K +Y+ D P+PEAP
Sbjct: 191 LK*IKKKKNSDESNLMVLNRRTRNKIT--KIVYLHDFPLPEAP 69
>TC88519 similar to PIR|C86437|C86437 hypothetical protein AAD21696.1
[imported] - Arabidopsis thaliana, partial (65%)
Length = 708
Score = 25.8 bits (55), Expect = 6.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 112 HERFDVSKALFSTKLSEGGPVGPHV 136
H+R+ +S+ LF + E GPV PHV
Sbjct: 461 HQRYLLSRLLF-WRHREAGPVSPHV 390
>AL371428
Length = 448
Score = 25.4 bits (54), Expect = 8.1
Identities = 13/31 (41%), Positives = 18/31 (57%), Gaps = 1/31 (3%)
Frame = +2
Query: 93 MTAFDMIEHLKTLYEEQA-RHERFDVSKALF 122
M+ D+ LKT + Q H RFD++K LF
Sbjct: 353 MSKIDIFPGLKTTFLNQK*LHSRFDLAKVLF 445
>BG585889 weakly similar to SP|Q40287|UFO5_ Flavonol 3-O-glucosyltransferase
5 (EC 2.4.1.91) (UDP-glucose flavonoid
3-O-glucosyltransferase 5)., partial (8%)
Length = 304
Score = 25.4 bits (54), Expect = 8.1
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +3
Query: 87 QKQHEGMTAFDMIEHLKTLYEEQAR---HERFDVSKALFSTKLSEGGPVGPHVLKMI 140
QK H + A I HL E R H FDV+ + +T S+ H+L+ I
Sbjct: 39 QKIHSVLLASPGIGHLIPTIELGKRLTTHHNFDVTIFVVTTATSDSDKTKSHILQQI 209
>TC85624 homologue to SP|P26969|GCSP_PEA Glycine dehydrogenase
[decarboxylating] mitochondrial precursor (EC 1.4.4.2),
partial (98%)
Length = 3772
Score = 25.4 bits (54), Expect = 8.1
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 64 HAKHLNDSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTL 105
H L D+ I L M + K EG+T MIEH+K L
Sbjct: 506 HLDSLVDATVPKSIRLKEM--KFNKFDEGLTEGQMIEHMKDL 625
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.316 0.130 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,769,147
Number of Sequences: 36976
Number of extensions: 43110
Number of successful extensions: 234
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of query: 143
length of database: 9,014,727
effective HSP length: 87
effective length of query: 56
effective length of database: 5,797,815
effective search space: 324677640
effective search space used: 324677640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)
Medicago: description of AC141110.1