
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140916.2 + phase: 0
(413 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86263 homologue to SP|P30124|HEM2_PEA Delta-aminolevulinic aci... 535 0.0
TC91032 weakly similar to GP|20196995|gb|AAB91977.2 expressed pr... 38 0.008
BQ751207 weakly similar to GP|604427|gb|AA ACOB protein {Emerice... 35 0.041
TC77523 homologue to GP|9954112|gb|AAG08959.1| tuber-specific an... 32 0.34
TC85251 homologue to PIR|JQ2128|JQ2128 metallothionein - soybean... 31 0.76
BQ144307 weakly similar to GP|6523547|emb| hydroxyproline-rich g... 30 1.3
TC76887 similar to GP|12802327|gb|AAK07827.1 mitochondrial proce... 30 1.3
BQ144498 similar to GP|6330472|dbj KIAA1205 protein {Homo sapien... 30 2.2
TC81043 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproli... 30 2.2
TC79886 similar to GP|12963432|gb|AAK11263.1 ribosomal protein P... 30 2.2
TC85071 similar to GP|11994207|dbj|BAB01310. gene_id:MPN9.20~unk... 29 2.9
TC77143 similar to GP|559557|gb|AAA51649.1|| arabinogalactan-pro... 29 2.9
BQ141742 weakly similar to PIR|T10798|T107 pherophorin-S - Volvo... 29 3.8
BE204888 similar to GP|21595622|gb| unknown {Arabidopsis thalian... 29 3.8
TC82303 weakly similar to GP|18073451|emb|CAC83345. GAS-2 homolo... 28 5.0
TC77148 ENOD20 28 5.0
BM779563 similar to PIR|T52141|T52 hypothetical protein [importe... 28 5.0
BQ144407 weakly similar to GP|6523547|emb| hydroxyproline-rich g... 28 5.0
AL370013 similar to PIR|T05268|T05 hypothetical protein T4L20.60... 28 5.0
TC87144 similar to GP|21595622|gb|AAM66118.1 unknown {Arabidopsi... 28 5.0
>TC86263 homologue to SP|P30124|HEM2_PEA Delta-aminolevulinic acid
dehydratase chloroplast precursor (EC 4.2.1.24),
complete
Length = 1591
Score = 535 bits (1378), Expect(2) = 0.0
Identities = 264/264 (100%), Positives = 264/264 (100%)
Frame = +3
Query: 1 MASSSTIPNTPLTLNSHTYVDLKPALPLKNYLSFSSSKRRPPCLFTVRASDADFEAAVVA 60
MASSSTIPNTPLTLNSHTYVDLKPALPLKNYLSFSSSKRRPPCLFTVRASDADFEAAVVA
Sbjct: 81 MASSSTIPNTPLTLNSHTYVDLKPALPLKNYLSFSSSKRRPPCLFTVRASDADFEAAVVA 260
Query: 61 GNVPDAPPVPPTPAAPAGTPVVTSLPIQRRPRRNRRSATHRSAFQETTLSPANFVYPLFI 120
GNVPDAPPVPPTPAAPAGTPVVTSLPIQRRPRRNRRSATHRSAFQETTLSPANFVYPLFI
Sbjct: 261 GNVPDAPPVPPTPAAPAGTPVVTSLPIQRRPRRNRRSATHRSAFQETTLSPANFVYPLFI 440
Query: 121 HEGEEDTPIGAMPGCYRLGWRHGLIEEVAKARDVGVNSVVLFPKIPDALKTPTGDEAYNE 180
HEGEEDTPIGAMPGCYRLGWRHGLIEEVAKARDVGVNSVVLFPKIPDALKTPTGDEAYNE
Sbjct: 441 HEGEEDTPIGAMPGCYRLGWRHGLIEEVAKARDVGVNSVVLFPKIPDALKTPTGDEAYNE 620
Query: 181 NGLVPRTIRLLKDKYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVAQ 240
NGLVPRTIRLLKDKYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVAQ
Sbjct: 621 NGLVPRTIRLLKDKYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVAQ 800
Query: 241 ARAGADVVSPSDMMDGRVGAMRAA 264
ARAGADVVSPSDMMDGRVGAMRAA
Sbjct: 801 ARAGADVVSPSDMMDGRVGAMRAA 872
Score = 299 bits (765), Expect(2) = 0.0
Identities = 149/149 (100%), Positives = 149/149 (100%)
Frame = +1
Query: 265 LDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALTEMREDE 324
LDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALTEMREDE
Sbjct: 874 LDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALTEMREDE 1053
Query: 325 TEGADILLVKPGLPYLDIIRLLRDNSPLPIAAYQVSGEYSMIKAGGALKMIDEEKVMMES 384
TEGADILLVKPGLPYLDIIRLLRDNSPLPIAAYQVSGEYSMIKAGGALKMIDEEKVMMES
Sbjct: 1054 TEGADILLVKPGLPYLDIIRLLRDNSPLPIAAYQVSGEYSMIKAGGALKMIDEEKVMMES 1233
Query: 385 LLCLRRAGADIILTYFALQAARCLCGEKR 413
LLCLRRAGADIILTYFALQAARCLCGEKR
Sbjct: 1234 LLCLRRAGADIILTYFALQAARCLCGEKR 1320
>TC91032 weakly similar to GP|20196995|gb|AAB91977.2 expressed protein
{Arabidopsis thaliana}, partial (37%)
Length = 1366
Score = 37.7 bits (86), Expect = 0.008
Identities = 39/139 (28%), Positives = 52/139 (37%)
Frame = -2
Query: 5 STIPNTPLTLNSHTYVDLKPALPLKNYLSFSSSKRRPPCLFTVRASDADFEAAVVAGNVP 64
ST P+TP TL LP + S S+ + PP L T+ + + P
Sbjct: 513 STPPSTPSTLPQQPSTSHSSTLPSHSPTSHSTLQSLPPTLTTLSSPSTPHFS-------P 355
Query: 65 DAPPVPPTPAAPAGTPVVTSLPIQRRPRRNRRSATHRSAFQETTLSPANFVYPLFIHEGE 124
+PP PP+P P ++ +L R RR RS R L H GE
Sbjct: 354 SSPPQPPSPPHPLAA-LIPALGRCRGHRRL*RSVKRRRCRGRRDLRN---------HRGE 205
Query: 125 EDTPIGAMPGCYRLGWRHG 143
+ IG G G R G
Sbjct: 204 KRGKIGLGIGSGESGSRRG 148
>BQ751207 weakly similar to GP|604427|gb|AA ACOB protein {Emericella
nidulans}, partial (12%)
Length = 758
Score = 35.4 bits (80), Expect = 0.041
Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 13/110 (11%)
Frame = +1
Query: 37 SKRRPPCLFTVRASDADFEAAVVAGNVPDAPPVPPTPAAPAGTP-------------VVT 83
S+ PP FT + + F + PP PP +P+ TP +T
Sbjct: 187 SRPSPPPTFTPTSPSSSFSLTAHTPTISPPPPPPPAITSPSSTPPRPSSSANSPS*LSLT 366
Query: 84 SLPIQRRPRRNRRSATHRSAFQETTLSPANFVYPLFIHEGEEDTPIGAMP 133
P P + S R AF T+ SP + TP +MP
Sbjct: 367 PAPTSPTPPYSPPSTYRRPAFSRTSSSP-------------QSTPASSMP 477
>TC77523 homologue to GP|9954112|gb|AAG08959.1| tuber-specific and
sucrose-responsive element binding factor {Solanum
tuberosum}, partial (43%)
Length = 1513
Score = 32.3 bits (72), Expect = 0.34
Identities = 28/92 (30%), Positives = 37/92 (39%), Gaps = 10/92 (10%)
Frame = +2
Query: 3 SSSTIPNTPLTLNSHTYVDLKPA----LPLKNYLSFSSSKRRPPCLFT------VRASDA 52
S S++P +NSH Y + LPL S S+S P L V +S
Sbjct: 665 SESSVPIVNTHVNSHVYRPVPTRTVAPLPLVETTSPSNSNDPPTSLSLSLPGVGVDSSSE 844
Query: 53 DFEAAVVAGNVPDAPPVPPTPAAPAGTPVVTS 84
D N PP PP P+A PV+T+
Sbjct: 845 DSNRVTEPVNTAPPPPPPPPPSAIPLMPVMTT 940
>TC85251 homologue to PIR|JQ2128|JQ2128 metallothionein - soybean, partial
(93%)
Length = 1554
Score = 31.2 bits (69), Expect = 0.76
Identities = 26/84 (30%), Positives = 35/84 (40%), Gaps = 4/84 (4%)
Frame = -2
Query: 22 LKPALPLKNYLSFSSSKRRPPCLFTVRASDADFEAAVVAGNVP---DAPPVP-PTPAAPA 77
L P LP +S + + PP V+A+ A P +PP+P PTPA A
Sbjct: 617 LPPPLPPPPKIS-PTPVQTPPAPAPVKATPVPAPAPAKQAPTPAPATSPPIPAPTPAIEA 441
Query: 78 GTPVVTSLPIQRRPRRNRRSATHR 101
P P +P+R R HR
Sbjct: 440 PVPA----PESSKPKRRRHRPKHR 381
>BQ144307 weakly similar to GP|6523547|emb| hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (24%)
Length = 1059
Score = 30.4 bits (67), Expect = 1.3
Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 6/110 (5%)
Frame = -1
Query: 14 LNSHTYVDLKPALP-----LKNYLSFSSSKRRPPCLFTVRASDADFEAAVVAGNVPDAPP 68
LN TY L P+ L++ + + S+ R PP + +PP
Sbjct: 573 LNKPTYTGLGPSATIPRNHLRSPIPYLSTPRPPP------------------PSPHFSPP 448
Query: 69 VPPTPAAPAGTPVVTSLPIQRRPRR-NRRSATHRSAFQETTLSPANFVYP 117
PP P+ P P+ R P N RS T A SP +YP
Sbjct: 447 PPPAPSPPP--------PLSRHPAHPNPRSPTSTYALPPPRTSPPESIYP 322
>TC76887 similar to GP|12802327|gb|AAK07827.1 mitochondrial processing
peptidase beta subunit {Cucumis melo}, partial (92%)
Length = 1974
Score = 30.4 bits (67), Expect = 1.3
Identities = 26/73 (35%), Positives = 31/73 (41%), Gaps = 1/73 (1%)
Frame = +2
Query: 2 ASSSTIPNTPLTLNSHTYVDLKPALPLKNYLSFSSSKRRPPCLFTVR-ASDADFEAAVVA 60
A S T PN SHT L K S RR P L ++R A+ + AA V
Sbjct: 68 AHSFTKPNP-----SHTRAALSTMTINKLLTLVRRSTRRTPILTSIRSATLSTSSAAPVT 232
Query: 61 GNVPDAPPVPPTP 73
+ P PP PP P
Sbjct: 233 RSPPSPPPSPPPP 271
>BQ144498 similar to GP|6330472|dbj KIAA1205 protein {Homo sapiens}, partial
(3%)
Length = 1284
Score = 29.6 bits (65), Expect = 2.2
Identities = 21/56 (37%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
Frame = -2
Query: 41 PPCLFT-VRASDADFEAAVVAGNVPDAPPVPPTPAAPAGTPVVTSLPIQRRPRRNR 95
P CLF+ VR D +F ++ + P PP PP PA P P RP R+R
Sbjct: 467 PRCLFSGVRVCDHNFVSSRLPPRRPP-PPQPPPGCPPARPPRAPQAP---RPTRHR 312
>TC81043 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproline-rich
glycoprotein DZ-HRGP {Volvox carteri f. nagariensis},
partial (19%)
Length = 555
Score = 29.6 bits (65), Expect = 2.2
Identities = 10/29 (34%), Positives = 16/29 (54%)
Frame = +1
Query: 63 VPDAPPVPPTPAAPAGTPVVTSLPIQRRP 91
+P +PP PP+P +P P + P + P
Sbjct: 304 IPPSPPAPPSPGSPPSPPPASPAPPKPTP 390
>TC79886 similar to GP|12963432|gb|AAK11263.1 ribosomal protein P2
{Podospora anserina}, partial (82%)
Length = 592
Score = 29.6 bits (65), Expect = 2.2
Identities = 24/81 (29%), Positives = 40/81 (48%), Gaps = 10/81 (12%)
Frame = -2
Query: 9 NTPLTLNSHTYVDLKPALPLKNYLSFSSSKRRPPCLFTVRASDADFEAAVV-------AG 61
N+ + N ++ +D++ N+ +S SKR P + +SD+ F +++ AG
Sbjct: 459 NSNINSNINSNLDIQKG*KSNNF--YS*SKRPKP----ISSSDSSFSSSLASSFFSS*AG 298
Query: 62 NVPDAPPVPP---TPAAPAGT 79
P+A PP TP PAGT
Sbjct: 297 APPEAAAPPPPEETPPPPAGT 235
>TC85071 similar to GP|11994207|dbj|BAB01310. gene_id:MPN9.20~unknown
protein {Arabidopsis thaliana}, partial (28%)
Length = 958
Score = 29.3 bits (64), Expect = 2.9
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +3
Query: 32 LSFSSS----KRRPPCLFTVRASDADFEAAVVAGNVPDAPPVPPTPAAPAGTPV 81
LSFSSS PP + + +A A P +PP PP +AP TP+
Sbjct: 15 LSFSSSCLPPATTPPSPPPPTPTTSVVTSATSANAPPSSPPPPPISSAPIATPL 176
>TC77143 similar to GP|559557|gb|AAA51649.1|| arabinogalactan-protein {Pyrus
communis}, partial (30%)
Length = 956
Score = 29.3 bits (64), Expect = 2.9
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = +3
Query: 64 PDAPPVPPTPAAPAGTPVVTSLPIQRRPRRNRRSATHRSAFQETTLSPANFVYP 117
P A P PPTP AP TP + P P +AT A T +PA P
Sbjct: 204 PSATPTPPTP-APVATPPTATPPTATPP-----TATPPPAAAPTPATPAPATSP 347
>BQ141742 weakly similar to PIR|T10798|T107 pherophorin-S - Volvox carteri,
partial (9%)
Length = 1337
Score = 28.9 bits (63), Expect = 3.8
Identities = 10/23 (43%), Positives = 15/23 (64%)
Frame = -1
Query: 62 NVPDAPPVPPTPAAPAGTPVVTS 84
++P PP PPTP +P P++ S
Sbjct: 71 SLPPPPPPPPTPHSPPPPPIIPS 3
>BE204888 similar to GP|21595622|gb| unknown {Arabidopsis thaliana}, partial
(16%)
Length = 632
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 52 ADFEAAVVAGNVPDAPPVPPTPAAPAGTPVVTS 84
A + AA A N P PP+ P PA P G + S
Sbjct: 571 APYAAAAPAINPPIPPPIAPCPACPYGPGIKQS 473
>TC82303 weakly similar to GP|18073451|emb|CAC83345. GAS-2 homologue
{Candida glabrata}, partial (7%)
Length = 846
Score = 28.5 bits (62), Expect = 5.0
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +1
Query: 8 PNTPLTLNSHTY-VDLKPALPLKNYLSFSSSKRRPPCLFTVRASDADFEAAVVAGNVPDA 66
P PL + T + +LP ++ + ++RRPP T A A P +
Sbjct: 148 PTPPLVSTALTACATMSRSLPT-SWTPTTRTRRRPPPPVTSTARPRPAPPPATALASPLS 324
Query: 67 PPVPPTPAAPAGTPVVTSLPIQRRP 91
PP+PP P A P V +P+ P
Sbjct: 325 PPLPP-PTASLPPPPVPPMPLAALP 396
>TC77148 ENOD20
Length = 1108
Score = 28.5 bits (62), Expect = 5.0
Identities = 18/55 (32%), Positives = 25/55 (44%)
Frame = +3
Query: 58 VVAGNVPDAPPVPPTPAAPAGTPVVTSLPIQRRPRRNRRSATHRSAFQETTLSPA 112
V+ V +PP PP+P P +S PI PRR+ S S + SP+
Sbjct: 399 VMVAPVLSSPPPPPSPPTPR-----SSTPIPHPPRRSLPSPPSPSPSPSPSPSPS 548
>BM779563 similar to PIR|T52141|T52 hypothetical protein [imported] -
Arabidopsis thaliana, partial (41%)
Length = 564
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/27 (40%), Positives = 16/27 (58%)
Frame = +1
Query: 64 PDAPPVPPTPAAPAGTPVVTSLPIQRR 90
P PP PP AP +P+ T L +++R
Sbjct: 430 PFPPPTPPPSLAPVSSPLPTQLFLEKR 510
>BQ144407 weakly similar to GP|6523547|emb| hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (23%)
Length = 1217
Score = 28.5 bits (62), Expect = 5.0
Identities = 12/28 (42%), Positives = 13/28 (45%)
Frame = -3
Query: 64 PDAPPVPPTPAAPAGTPVVTSLPIQRRP 91
P PP PP P PA P S+ I P
Sbjct: 219 PPTPPPPPAPPRPAAPPPSLSISINPAP 136
>AL370013 similar to PIR|T05268|T05 hypothetical protein T4L20.60 -
Arabidopsis thaliana (fragment), partial (39%)
Length = 461
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +2
Query: 252 DMMDGRVGAMRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMN 309
+M D +V A+R+ALD+ GF+ V I+ A+ + G EA P + K Y N
Sbjct: 104 NMFDAQVDAVRSALDSMGFKDVEIV--VAETGWPYKGDNDEA---GPSIENAKAYNGN 262
>TC87144 similar to GP|21595622|gb|AAM66118.1 unknown {Arabidopsis
thaliana}, partial (52%)
Length = 994
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 52 ADFEAAVVAGNVPDAPPVPPTPAAPAG 78
A + AA A N P PP+ P PA P G
Sbjct: 487 APYAAAAPAINPPIPPPIAPCPACPYG 407
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,356,610
Number of Sequences: 36976
Number of extensions: 158528
Number of successful extensions: 2221
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2034
length of query: 413
length of database: 9,014,727
effective HSP length: 99
effective length of query: 314
effective length of database: 5,354,103
effective search space: 1681188342
effective search space used: 1681188342
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC140916.2