Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140916.2 + phase: 0 
         (413 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC86263 homologue to SP|P30124|HEM2_PEA Delta-aminolevulinic aci...   535  0.0
TC91032 weakly similar to GP|20196995|gb|AAB91977.2 expressed pr...    38  0.008
BQ751207 weakly similar to GP|604427|gb|AA ACOB protein {Emerice...    35  0.041
TC77523 homologue to GP|9954112|gb|AAG08959.1| tuber-specific an...    32  0.34
TC85251 homologue to PIR|JQ2128|JQ2128 metallothionein - soybean...    31  0.76
BQ144307 weakly similar to GP|6523547|emb| hydroxyproline-rich g...    30  1.3
TC76887 similar to GP|12802327|gb|AAK07827.1 mitochondrial proce...    30  1.3
BQ144498 similar to GP|6330472|dbj KIAA1205 protein {Homo sapien...    30  2.2
TC81043 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproli...    30  2.2
TC79886 similar to GP|12963432|gb|AAK11263.1 ribosomal protein P...    30  2.2
TC85071 similar to GP|11994207|dbj|BAB01310. gene_id:MPN9.20~unk...    29  2.9
TC77143 similar to GP|559557|gb|AAA51649.1|| arabinogalactan-pro...    29  2.9
BQ141742 weakly similar to PIR|T10798|T107 pherophorin-S - Volvo...    29  3.8
BE204888 similar to GP|21595622|gb| unknown {Arabidopsis thalian...    29  3.8
TC82303 weakly similar to GP|18073451|emb|CAC83345. GAS-2 homolo...    28  5.0
TC77148 ENOD20                                                         28  5.0
BM779563 similar to PIR|T52141|T52 hypothetical protein [importe...    28  5.0
BQ144407 weakly similar to GP|6523547|emb| hydroxyproline-rich g...    28  5.0
AL370013 similar to PIR|T05268|T05 hypothetical protein T4L20.60...    28  5.0
TC87144 similar to GP|21595622|gb|AAM66118.1 unknown {Arabidopsi...    28  5.0

>TC86263 homologue to SP|P30124|HEM2_PEA Delta-aminolevulinic acid
           dehydratase  chloroplast precursor (EC 4.2.1.24),
           complete
          Length = 1591

 Score =  535 bits (1378), Expect(2) = 0.0
 Identities = 264/264 (100%), Positives = 264/264 (100%)
 Frame = +3

Query: 1   MASSSTIPNTPLTLNSHTYVDLKPALPLKNYLSFSSSKRRPPCLFTVRASDADFEAAVVA 60
           MASSSTIPNTPLTLNSHTYVDLKPALPLKNYLSFSSSKRRPPCLFTVRASDADFEAAVVA
Sbjct: 81  MASSSTIPNTPLTLNSHTYVDLKPALPLKNYLSFSSSKRRPPCLFTVRASDADFEAAVVA 260

Query: 61  GNVPDAPPVPPTPAAPAGTPVVTSLPIQRRPRRNRRSATHRSAFQETTLSPANFVYPLFI 120
           GNVPDAPPVPPTPAAPAGTPVVTSLPIQRRPRRNRRSATHRSAFQETTLSPANFVYPLFI
Sbjct: 261 GNVPDAPPVPPTPAAPAGTPVVTSLPIQRRPRRNRRSATHRSAFQETTLSPANFVYPLFI 440

Query: 121 HEGEEDTPIGAMPGCYRLGWRHGLIEEVAKARDVGVNSVVLFPKIPDALKTPTGDEAYNE 180
           HEGEEDTPIGAMPGCYRLGWRHGLIEEVAKARDVGVNSVVLFPKIPDALKTPTGDEAYNE
Sbjct: 441 HEGEEDTPIGAMPGCYRLGWRHGLIEEVAKARDVGVNSVVLFPKIPDALKTPTGDEAYNE 620

Query: 181 NGLVPRTIRLLKDKYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVAQ 240
           NGLVPRTIRLLKDKYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVAQ
Sbjct: 621 NGLVPRTIRLLKDKYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVAQ 800

Query: 241 ARAGADVVSPSDMMDGRVGAMRAA 264
           ARAGADVVSPSDMMDGRVGAMRAA
Sbjct: 801 ARAGADVVSPSDMMDGRVGAMRAA 872



 Score =  299 bits (765), Expect(2) = 0.0
 Identities = 149/149 (100%), Positives = 149/149 (100%)
 Frame = +1

Query: 265  LDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALTEMREDE 324
            LDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALTEMREDE
Sbjct: 874  LDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALTEMREDE 1053

Query: 325  TEGADILLVKPGLPYLDIIRLLRDNSPLPIAAYQVSGEYSMIKAGGALKMIDEEKVMMES 384
            TEGADILLVKPGLPYLDIIRLLRDNSPLPIAAYQVSGEYSMIKAGGALKMIDEEKVMMES
Sbjct: 1054 TEGADILLVKPGLPYLDIIRLLRDNSPLPIAAYQVSGEYSMIKAGGALKMIDEEKVMMES 1233

Query: 385  LLCLRRAGADIILTYFALQAARCLCGEKR 413
            LLCLRRAGADIILTYFALQAARCLCGEKR
Sbjct: 1234 LLCLRRAGADIILTYFALQAARCLCGEKR 1320


>TC91032 weakly similar to GP|20196995|gb|AAB91977.2 expressed protein
           {Arabidopsis thaliana}, partial (37%)
          Length = 1366

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 39/139 (28%), Positives = 52/139 (37%)
 Frame = -2

Query: 5   STIPNTPLTLNSHTYVDLKPALPLKNYLSFSSSKRRPPCLFTVRASDADFEAAVVAGNVP 64
           ST P+TP TL           LP  +  S S+ +  PP L T+ +      +       P
Sbjct: 513 STPPSTPSTLPQQPSTSHSSTLPSHSPTSHSTLQSLPPTLTTLSSPSTPHFS-------P 355

Query: 65  DAPPVPPTPAAPAGTPVVTSLPIQRRPRRNRRSATHRSAFQETTLSPANFVYPLFIHEGE 124
            +PP PP+P  P    ++ +L   R  RR  RS   R       L           H GE
Sbjct: 354 SSPPQPPSPPHPLAA-LIPALGRCRGHRRL*RSVKRRRCRGRRDLRN---------HRGE 205

Query: 125 EDTPIGAMPGCYRLGWRHG 143
           +   IG   G    G R G
Sbjct: 204 KRGKIGLGIGSGESGSRRG 148


>BQ751207 weakly similar to GP|604427|gb|AA ACOB protein {Emericella
           nidulans}, partial (12%)
          Length = 758

 Score = 35.4 bits (80), Expect = 0.041
 Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 13/110 (11%)
 Frame = +1

Query: 37  SKRRPPCLFTVRASDADFEAAVVAGNVPDAPPVPPTPAAPAGTP-------------VVT 83
           S+  PP  FT  +  + F        +   PP PP   +P+ TP              +T
Sbjct: 187 SRPSPPPTFTPTSPSSSFSLTAHTPTISPPPPPPPAITSPSSTPPRPSSSANSPS*LSLT 366

Query: 84  SLPIQRRPRRNRRSATHRSAFQETTLSPANFVYPLFIHEGEEDTPIGAMP 133
             P    P  +  S   R AF  T+ SP             + TP  +MP
Sbjct: 367 PAPTSPTPPYSPPSTYRRPAFSRTSSSP-------------QSTPASSMP 477


>TC77523 homologue to GP|9954112|gb|AAG08959.1| tuber-specific and
           sucrose-responsive element binding factor {Solanum
           tuberosum}, partial (43%)
          Length = 1513

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 28/92 (30%), Positives = 37/92 (39%), Gaps = 10/92 (10%)
 Frame = +2

Query: 3   SSSTIPNTPLTLNSHTYVDLKPA----LPLKNYLSFSSSKRRPPCLFT------VRASDA 52
           S S++P     +NSH Y  +       LPL    S S+S   P  L        V +S  
Sbjct: 665 SESSVPIVNTHVNSHVYRPVPTRTVAPLPLVETTSPSNSNDPPTSLSLSLPGVGVDSSSE 844

Query: 53  DFEAAVVAGNVPDAPPVPPTPAAPAGTPVVTS 84
           D        N    PP PP P+A    PV+T+
Sbjct: 845 DSNRVTEPVNTAPPPPPPPPPSAIPLMPVMTT 940


>TC85251 homologue to PIR|JQ2128|JQ2128 metallothionein - soybean, partial
           (93%)
          Length = 1554

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 26/84 (30%), Positives = 35/84 (40%), Gaps = 4/84 (4%)
 Frame = -2

Query: 22  LKPALPLKNYLSFSSSKRRPPCLFTVRASDADFEAAVVAGNVP---DAPPVP-PTPAAPA 77
           L P LP    +S  +  + PP    V+A+     A       P    +PP+P PTPA  A
Sbjct: 617 LPPPLPPPPKIS-PTPVQTPPAPAPVKATPVPAPAPAKQAPTPAPATSPPIPAPTPAIEA 441

Query: 78  GTPVVTSLPIQRRPRRNRRSATHR 101
             P     P   +P+R R    HR
Sbjct: 440 PVPA----PESSKPKRRRHRPKHR 381


>BQ144307 weakly similar to GP|6523547|emb| hydroxyproline-rich glycoprotein
           DZ-HRGP {Volvox carteri f. nagariensis}, partial (24%)
          Length = 1059

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 6/110 (5%)
 Frame = -1

Query: 14  LNSHTYVDLKPALP-----LKNYLSFSSSKRRPPCLFTVRASDADFEAAVVAGNVPDAPP 68
           LN  TY  L P+       L++ + + S+ R PP                   +   +PP
Sbjct: 573 LNKPTYTGLGPSATIPRNHLRSPIPYLSTPRPPP------------------PSPHFSPP 448

Query: 69  VPPTPAAPAGTPVVTSLPIQRRPRR-NRRSATHRSAFQETTLSPANFVYP 117
            PP P+ P         P+ R P   N RS T   A      SP   +YP
Sbjct: 447 PPPAPSPPP--------PLSRHPAHPNPRSPTSTYALPPPRTSPPESIYP 322


>TC76887 similar to GP|12802327|gb|AAK07827.1 mitochondrial processing
           peptidase beta subunit {Cucumis melo}, partial (92%)
          Length = 1974

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 26/73 (35%), Positives = 31/73 (41%), Gaps = 1/73 (1%)
 Frame = +2

Query: 2   ASSSTIPNTPLTLNSHTYVDLKPALPLKNYLSFSSSKRRPPCLFTVR-ASDADFEAAVVA 60
           A S T PN      SHT   L      K       S RR P L ++R A+ +   AA V 
Sbjct: 68  AHSFTKPNP-----SHTRAALSTMTINKLLTLVRRSTRRTPILTSIRSATLSTSSAAPVT 232

Query: 61  GNVPDAPPVPPTP 73
            + P  PP PP P
Sbjct: 233 RSPPSPPPSPPPP 271


>BQ144498 similar to GP|6330472|dbj KIAA1205 protein {Homo sapiens}, partial
           (3%)
          Length = 1284

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 21/56 (37%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
 Frame = -2

Query: 41  PPCLFT-VRASDADFEAAVVAGNVPDAPPVPPTPAAPAGTPVVTSLPIQRRPRRNR 95
           P CLF+ VR  D +F ++ +    P  PP PP    PA  P     P   RP R+R
Sbjct: 467 PRCLFSGVRVCDHNFVSSRLPPRRPP-PPQPPPGCPPARPPRAPQAP---RPTRHR 312


>TC81043 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproline-rich
           glycoprotein DZ-HRGP {Volvox carteri f. nagariensis},
           partial (19%)
          Length = 555

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 10/29 (34%), Positives = 16/29 (54%)
 Frame = +1

Query: 63  VPDAPPVPPTPAAPAGTPVVTSLPIQRRP 91
           +P +PP PP+P +P   P  +  P +  P
Sbjct: 304 IPPSPPAPPSPGSPPSPPPASPAPPKPTP 390


>TC79886 similar to GP|12963432|gb|AAK11263.1 ribosomal protein P2
           {Podospora anserina}, partial (82%)
          Length = 592

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 24/81 (29%), Positives = 40/81 (48%), Gaps = 10/81 (12%)
 Frame = -2

Query: 9   NTPLTLNSHTYVDLKPALPLKNYLSFSSSKRRPPCLFTVRASDADFEAAVV-------AG 61
           N+ +  N ++ +D++      N+  +S SKR  P    + +SD+ F +++        AG
Sbjct: 459 NSNINSNINSNLDIQKG*KSNNF--YS*SKRPKP----ISSSDSSFSSSLASSFFSS*AG 298

Query: 62  NVPDAPPVPP---TPAAPAGT 79
             P+A   PP   TP  PAGT
Sbjct: 297 APPEAAAPPPPEETPPPPAGT 235


>TC85071 similar to GP|11994207|dbj|BAB01310. gene_id:MPN9.20~unknown
          protein {Arabidopsis thaliana}, partial (28%)
          Length = 958

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +3

Query: 32 LSFSSS----KRRPPCLFTVRASDADFEAAVVAGNVPDAPPVPPTPAAPAGTPV 81
          LSFSSS       PP       + +   +A  A   P +PP PP  +AP  TP+
Sbjct: 15 LSFSSSCLPPATTPPSPPPPTPTTSVVTSATSANAPPSSPPPPPISSAPIATPL 176


>TC77143 similar to GP|559557|gb|AAA51649.1|| arabinogalactan-protein {Pyrus
           communis}, partial (30%)
          Length = 956

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 20/54 (37%), Positives = 23/54 (42%)
 Frame = +3

Query: 64  PDAPPVPPTPAAPAGTPVVTSLPIQRRPRRNRRSATHRSAFQETTLSPANFVYP 117
           P A P PPTP AP  TP   + P    P     +AT   A   T  +PA    P
Sbjct: 204 PSATPTPPTP-APVATPPTATPPTATPP-----TATPPPAAAPTPATPAPATSP 347


>BQ141742 weakly similar to PIR|T10798|T107 pherophorin-S - Volvox carteri,
          partial (9%)
          Length = 1337

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 10/23 (43%), Positives = 15/23 (64%)
 Frame = -1

Query: 62 NVPDAPPVPPTPAAPAGTPVVTS 84
          ++P  PP PPTP +P   P++ S
Sbjct: 71 SLPPPPPPPPTPHSPPPPPIIPS 3


>BE204888 similar to GP|21595622|gb| unknown {Arabidopsis thaliana}, partial
           (16%)
          Length = 632

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 52  ADFEAAVVAGNVPDAPPVPPTPAAPAGTPVVTS 84
           A + AA  A N P  PP+ P PA P G  +  S
Sbjct: 571 APYAAAAPAINPPIPPPIAPCPACPYGPGIKQS 473


>TC82303 weakly similar to GP|18073451|emb|CAC83345. GAS-2 homologue
           {Candida glabrata}, partial (7%)
          Length = 846

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +1

Query: 8   PNTPLTLNSHTY-VDLKPALPLKNYLSFSSSKRRPPCLFTVRASDADFEAAVVAGNVPDA 66
           P  PL   + T    +  +LP  ++   + ++RRPP   T  A          A   P +
Sbjct: 148 PTPPLVSTALTACATMSRSLPT-SWTPTTRTRRRPPPPVTSTARPRPAPPPATALASPLS 324

Query: 67  PPVPPTPAAPAGTPVVTSLPIQRRP 91
           PP+PP P A    P V  +P+   P
Sbjct: 325 PPLPP-PTASLPPPPVPPMPLAALP 396


>TC77148 ENOD20
          Length = 1108

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 18/55 (32%), Positives = 25/55 (44%)
 Frame = +3

Query: 58  VVAGNVPDAPPVPPTPAAPAGTPVVTSLPIQRRPRRNRRSATHRSAFQETTLSPA 112
           V+   V  +PP PP+P  P      +S PI   PRR+  S    S     + SP+
Sbjct: 399 VMVAPVLSSPPPPPSPPTPR-----SSTPIPHPPRRSLPSPPSPSPSPSPSPSPS 548


>BM779563 similar to PIR|T52141|T52 hypothetical protein [imported] -
           Arabidopsis thaliana, partial (41%)
          Length = 564

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 11/27 (40%), Positives = 16/27 (58%)
 Frame = +1

Query: 64  PDAPPVPPTPAAPAGTPVVTSLPIQRR 90
           P  PP PP   AP  +P+ T L +++R
Sbjct: 430 PFPPPTPPPSLAPVSSPLPTQLFLEKR 510


>BQ144407 weakly similar to GP|6523547|emb| hydroxyproline-rich glycoprotein
           DZ-HRGP {Volvox carteri f. nagariensis}, partial (23%)
          Length = 1217

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 12/28 (42%), Positives = 13/28 (45%)
 Frame = -3

Query: 64  PDAPPVPPTPAAPAGTPVVTSLPIQRRP 91
           P  PP PP P  PA  P   S+ I   P
Sbjct: 219 PPTPPPPPAPPRPAAPPPSLSISINPAP 136


>AL370013 similar to PIR|T05268|T05 hypothetical protein T4L20.60 -
           Arabidopsis thaliana (fragment), partial (39%)
          Length = 461

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +2

Query: 252 DMMDGRVGAMRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMN 309
           +M D +V A+R+ALD+ GF+ V I+   A+    + G   EA    P   + K Y  N
Sbjct: 104 NMFDAQVDAVRSALDSMGFKDVEIV--VAETGWPYKGDNDEA---GPSIENAKAYNGN 262


>TC87144 similar to GP|21595622|gb|AAM66118.1 unknown {Arabidopsis
           thaliana}, partial (52%)
          Length = 994

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 52  ADFEAAVVAGNVPDAPPVPPTPAAPAG 78
           A + AA  A N P  PP+ P PA P G
Sbjct: 487 APYAAAAPAINPPIPPPIAPCPACPYG 407


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.318    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,356,610
Number of Sequences: 36976
Number of extensions: 158528
Number of successful extensions: 2221
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2034
length of query: 413
length of database: 9,014,727
effective HSP length: 99
effective length of query: 314
effective length of database: 5,354,103
effective search space: 1681188342
effective search space used: 1681188342
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)


Medicago: description of AC140916.2