BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140916.11 - phase: 0
(363 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW697072 weakly similar to GP|17979155|gb| unknown protein {Arab... 36 0.020
BG454595 similar to PIR|D86323|D863 protein F14D16.9 [imported] ... 36 0.027
BQ144314 weakly similar to GP|21322711|em pherophorin-dz1 protei... 35 0.035
BQ752354 similar to GP|163635|gb|AAA protamine {Bos taurus}, par... 34 0.10
TC79918 similar to PIR|T06671|T06671 hypothetical protein T17F15... 33 0.23
BQ141680 similar to GP|11993889|gb| virion-associated nuclear-sh... 32 0.38
TC83149 similar to GP|13561982|gb|AAK30594.1 flagelliform silk p... 32 0.50
TC87205 similar to GP|12324445|gb|AAG52185.1 putative splicing f... 32 0.50
BQ141909 weakly similar to GP|14253159|emb VMP3 protein {Volvox ... 31 0.66
BQ151174 similar to GP|11036868|gb| PxORF73 peptide {Plutella xy... 31 0.86
BQ144307 weakly similar to GP|6523547|emb| hydroxyproline-rich g... 31 0.86
TC87728 similar to GP|21554610|gb|AAM63632.1 unknown {Arabidopsi... 31 0.86
TC92931 weakly similar to GP|7294506|gb|AAF49848.1| CG11274 gene... 31 0.86
TC91221 similar to GP|21553718|gb|AAM62811.1 unknown {Arabidopsi... 31 0.86
TC76316 weakly similar to GP|11994454|dbj|BAB02456. contains sim... 30 1.1
BG648462 weakly similar to GP|14253163|em VMP4 protein {Volvox c... 30 1.1
AW694927 GP|10120434|gb Unknown protein {Arabidopsis thaliana}, ... 30 1.1
TC82169 similar to GP|21703134|gb|AAM74507.1 AT4g27320/M4I22_130... 30 1.5
TC87264 similar to GP|13605503|gb|AAK32745.1 AT5g44670/K15C23_12... 30 1.5
BE999007 similar to GP|10176957|dbj gene_id:MHJ24.7~unknown prot... 30 1.5
>AW697072 weakly similar to GP|17979155|gb| unknown protein {Arabidopsis
thaliana}, partial (21%)
Length = 739
Score = 36.2 bits (82), Expect = 0.020
Identities = 17/36 (47%), Positives = 22/36 (60%)
Frame = -2
Query: 11 SLPPPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNIT 46
S PPPLPP P TP T+H T+LS + + L+ T
Sbjct: 498 SSPPPLPPPAPRTPFPPTQHFTHLSPPQGPVILSHT 391
>BG454595 similar to PIR|D86323|D863 protein F14D16.9 [imported] -
Arabidopsis thaliana, partial (34%)
Length = 669
Score = 35.8 bits (81), Expect = 0.027
Identities = 17/48 (35%), Positives = 26/48 (53%), Gaps = 6/48 (12%)
Frame = +2
Query: 5 KRSPIKSLPPPLPPS------TPPTPHTQTRHSTNLSKSRAWIPLNIT 46
+R+PI +PPP PP+ PP H + R +T L + PLN++
Sbjct: 146 RRNPIPKIPPPPPPTRFPRRKQPPLHHLRPREATVLPARARFAPLNVS 289
>BQ144314 weakly similar to GP|21322711|em pherophorin-dz1 protein {Volvox
carteri f. nagariensis}, partial (6%)
Length = 1154
Score = 35.4 bits (80), Expect = 0.035
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +2
Query: 8 PIKSLPPPLPP-STPPTPHT-QTRHSTNLSKSRAWIPLNITRQELSLPLTFPTGQTFRWK 65
PI +LPPP PP S+PPT T H+ + K+ PL ++ P PT
Sbjct: 14 PIPTLPPPPPPPSSPPTTQTANPPHTPTIKKNPLPSPLFLSPPPSPFPFFLPT------H 175
Query: 66 NTAPSQYTGVVGSHLISLKHL 86
NT Y+ ++ H K L
Sbjct: 176NTLSFTYSFLLYKHTTKQKKL 238
>BQ752354 similar to GP|163635|gb|AAA protamine {Bos taurus}, partial (35%)
Length = 630
Score = 33.9 bits (76), Expect = 0.10
Identities = 23/59 (38%), Positives = 25/59 (41%)
Frame = -2
Query: 11 SLPPPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNITRQELSLPLTFPTGQTFRWKNTAP 69
S PP S PPTP T R T S+S +P TR PT T RW AP
Sbjct: 470 SCPPSCTSSCPPTPRTARRRFTATSRSSCPLP-TATRSATPSSGPTPTSST-RWSLPAP 300
>TC79918 similar to PIR|T06671|T06671 hypothetical protein T17F15.10 -
Arabidopsis thaliana, partial (39%)
Length = 1269
Score = 32.7 bits (73), Expect = 0.23
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +2
Query: 6 RSPIKSLPPPLPPSTPPTPHTQTRHSTNLSKSR 38
RS K LPPP PP PP PH + NLS +R
Sbjct: 191 RSSSKPLPPPPPPLLPPPPHPIP--TENLSSNR 283
>BQ141680 similar to GP|11993889|gb| virion-associated nuclear-shuttling
protein {Mus musculus}, partial (3%)
Length = 1156
Score = 32.0 bits (71), Expect = 0.38
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3
Query: 10 KSLPPPLPPSTPPTPH 25
+SLPPP PPS PTPH
Sbjct: 86 RSLPPPPPPSVHPTPH 39
>TC83149 similar to GP|13561982|gb|AAK30594.1 flagelliform silk protein
{Argiope trifasciata}, partial (3%)
Length = 1177
Score = 31.6 bits (70), Expect = 0.50
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 2 SKRKRSPIKSLPPPLPPS-TPPTPHTQTRHSTNLSKSR 38
S R+P++S PP P S TP P T +R + + S SR
Sbjct: 30 SYASRTPLRSTPPTRPSSPTPSAPRTSSRSTPSTSPSR 143
>TC87205 similar to GP|12324445|gb|AAG52185.1 putative splicing factor;
53460-55514 {Arabidopsis thaliana}, partial (81%)
Length = 1197
Score = 31.6 bits (70), Expect = 0.50
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -1
Query: 4 RKRSPIKSLPPPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNITRQELSL 52
++ P S PPPLPP PP P+ R S + W + RQ L
Sbjct: 444 KRPPPALSPPPPLPPPPPPPPY--PRRSLDDGPLPPWASSTLNRQPSKL 304
>BQ141909 weakly similar to GP|14253159|emb VMP3 protein {Volvox carteri f.
nagariensis}, partial (13%)
Length = 1223
Score = 31.2 bits (69), Expect = 0.66
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -2
Query: 6 RSPIKSLPPPLPPSTPPTPHTQTRHSTNLS 35
R P++S PPPLPP P P T + H T S
Sbjct: 229 RPPLRS-PPPLPPLPPLPPFTPSSHLTTSS 143
>BQ151174 similar to GP|11036868|gb| PxORF73 peptide {Plutella xylostella
granulovirus}, partial (42%)
Length = 909
Score = 30.8 bits (68), Expect = 0.86
Identities = 22/65 (33%), Positives = 28/65 (42%), Gaps = 6/65 (9%)
Frame = +3
Query: 3 KRKRSPIKSLPPPLPPSTPPT------PHTQTRHSTNLSKSRAWIPLNITRQELSLPLTF 56
K K+SP K PP P+TPP P QT ++TN K + + P
Sbjct: 93 KTKKSPRKKEKPPPRPATPPPAPAPPGPPNQTTNTTNPKKQHTPTTPTHPPRPHTPPTPP 272
Query: 57 PTGQT 61
PT QT
Sbjct: 273 PTTQT 287
>BQ144307 weakly similar to GP|6523547|emb| hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (24%)
Length = 1059
Score = 30.8 bits (68), Expect = 0.86
Identities = 17/38 (44%), Positives = 19/38 (49%), Gaps = 1/38 (2%)
Frame = -2
Query: 8 PIKSLPPPLP-PSTPPTPHTQTRHSTNLSKSRAWIPLN 44
P++ PPPLP P PPTP R S A PLN
Sbjct: 446 PLRPPPPPLPSPDIPPTPTPAPRLQLTPSPPHAPPPLN 333
Score = 27.3 bits (59), Expect = 9.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 13 PPPLPPSTPPTPHTQTRHSTN 33
PPPL PST P P+ ++ +N
Sbjct: 347 PPPLNPSTHPPPNKNDKNKSN 285
>TC87728 similar to GP|21554610|gb|AAM63632.1 unknown {Arabidopsis
thaliana}, partial (87%)
Length = 1283
Score = 30.8 bits (68), Expect = 0.86
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 5 KRSPIKSLPPPLPPSTPPTPHTQTRHSTNLSKS 37
+R P+ LPPP PPS P +Q+R T+L S
Sbjct: 57 RRQPLSRLPPPSPPSAPSL--SQSRTITDLGYS 149
>TC92931 weakly similar to GP|7294506|gb|AAF49848.1| CG11274 gene product
{Drosophila melanogaster}, partial (3%)
Length = 656
Score = 30.8 bits (68), Expect = 0.86
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 3 KRKRSPIKSLPPPLPPSTPPTPHTQTRHSTNLSKS 37
+R + LPPP PP PP + +R S + S++
Sbjct: 301 RRNNHHLLHLPPPPPPQNPPLTNPHSRESASTSRA 405
>TC91221 similar to GP|21553718|gb|AAM62811.1 unknown {Arabidopsis
thaliana}, partial (31%)
Length = 917
Score = 30.8 bits (68), Expect = 0.86
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 8 PIKSLPPPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNIT 46
P S PP LPP PP P + + LS S W P + T
Sbjct: 362 PTHSPPPQLPPPPPPPP-SSNHPPSPLSSSSPWHPFSPT 475
>TC76316 weakly similar to GP|11994454|dbj|BAB02456. contains similarity to
receptor protein kinase~gene_id:MLD14.4 {Arabidopsis
thaliana}, partial (37%)
Length = 1745
Score = 30.4 bits (67), Expect = 1.1
Identities = 22/71 (30%), Positives = 29/71 (39%), Gaps = 1/71 (1%)
Frame = +3
Query: 7 SPIKSLPPPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNITRQELSLPLTFPTGQTFRW-K 65
SP S PPP PP PPT R L K ++ + PTG T W +
Sbjct: 204 SPESSCPPPPPPPCPPTLSRLDRARRVLLKFKS-------------NIYDPTGYTSNWNE 344
Query: 66 NTAPSQYTGVV 76
NT + G++
Sbjct: 345 NTDTCNFHGIL 377
>BG648462 weakly similar to GP|14253163|em VMP4 protein {Volvox carteri f.
nagariensis}, partial (4%)
Length = 678
Score = 30.4 bits (67), Expect = 1.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 8 PIKSLPPPLPPSTPPTPH 25
P+ SLPPP P PP PH
Sbjct: 427 PLSSLPPPQPEMPPPHPH 480
>AW694927 GP|10120434|gb Unknown protein {Arabidopsis thaliana}, partial (3%)
Length = 651
Score = 30.4 bits (67), Expect = 1.1
Identities = 22/71 (30%), Positives = 29/71 (39%), Gaps = 1/71 (1%)
Frame = +1
Query: 7 SPIKSLPPPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNITRQELSLPLTFPTGQTFRW-K 65
SP S PPP PP PPT R L K ++ + PTG T W +
Sbjct: 223 SPESSCPPPPPPPCPPTLSRLDRARRVLLKFKS-------------NIYDPTGYTSNWNE 363
Query: 66 NTAPSQYTGVV 76
NT + G++
Sbjct: 364 NTDTCNFHGIL 396
>TC82169 similar to GP|21703134|gb|AAM74507.1 AT4g27320/M4I22_130
{Arabidopsis thaliana}, partial (50%)
Length = 600
Score = 30.0 bits (66), Expect = 1.5
Identities = 19/55 (34%), Positives = 27/55 (48%), Gaps = 3/55 (5%)
Frame = +1
Query: 6 RSPIKSL---PPPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNITRQELSLPLTFP 57
++P+ SL P TP TPHT H++ S+S PL + + LPL P
Sbjct: 19 KTPLFSLFLSKKPKKCRTPITPHTNPTHNSPKSESTTLPPLATSPPQHQLPLPAP 183
>TC87264 similar to GP|13605503|gb|AAK32745.1 AT5g44670/K15C23_12
{Arabidopsis thaliana}, partial (64%)
Length = 1784
Score = 30.0 bits (66), Expect = 1.5
Identities = 15/29 (51%), Positives = 16/29 (54%), Gaps = 1/29 (3%)
Frame = +3
Query: 5 KRSPIKSLPPP-LPPSTPPTPHTQTRHST 32
K S + S PPP LPP P P QT H T
Sbjct: 294 KLSTVTSTPPPNLPPPPPSPPLVQTEHVT 380
>BE999007 similar to GP|10176957|dbj gene_id:MHJ24.7~unknown protein
{Arabidopsis thaliana}, partial (20%)
Length = 484
Score = 30.0 bits (66), Expect = 1.5
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +2
Query: 13 PPPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNITR--QELSLPLTFP 57
P PLP PP PH + S L R+ L R + L LPL FP
Sbjct: 230 PNPLPLFNPPYPHLHSLSSRRLRTPRSLSTLLSHRLLRSLLLPLRFP 370
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,472,323
Number of Sequences: 36976
Number of extensions: 203808
Number of successful extensions: 4443
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 2488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3995
length of query: 363
length of database: 9,014,727
effective HSP length: 97
effective length of query: 266
effective length of database: 5,428,055
effective search space: 1443862630
effective search space used: 1443862630
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC140916.11