BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140913.5 + phase: 0 /pseudo
(584 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC79804 weakly similar to GP|6175165|gb|AAF04891.1| Mutator-like... 61 1e-09
CB891859 similar to GP|6175165|gb| Mutator-like transposase {Ara... 55 6e-08
AL375901 similar to GP|9759134|dbj mutator-like transposase-like... 43 4e-04
AL375902 similar to GP|9759134|dbj mutator-like transposase-like... 38 0.009
TC81234 similar to GP|6752888|gb|AAF27920.1| unknown {Malus x do... 31 1.5
TC81835 similar to PIR|T48059|T48059 ABC transporter-like protei... 30 3.4
TC76350 similar to GP|8132441|gb|AAF73291.1| extensin {Pisum sat... 30 3.4
TC90861 similar to GP|20466223|gb|AAM20429.1 auxilin-like protei... 28 7.5
TC86178 similar to GP|6752888|gb|AAF27920.1| unknown {Malus x do... 28 7.5
TC86179 similar to GP|6752888|gb|AAF27920.1| unknown {Malus x do... 28 7.5
BF646328 similar to PIR|F84533|F845 Mutator-like transposase [im... 28 9.8
>TC79804 weakly similar to GP|6175165|gb|AAF04891.1| Mutator-like transposase
{Arabidopsis thaliana}, partial (57%)
Length = 2129
Score = 61.2 bits (147), Expect = 1e-09
Identities = 47/181 (25%), Positives = 74/181 (39%), Gaps = 1/181 (0%)
Frame = +1
Query: 315 YALNVPLFDYYRGVIKKANQRALDWVDNIPKENWTQAYDEGRRWGHMTSNIVESWNFVFK 374
YA + F I++ + A W+ + W Y EG R+GH++SNI E +N
Sbjct: 1108 YATTINAFREKMAEIEEVSPNASMWLQHFHPSQWALVYFEGTRYGHLSSNI-EEFNKWIL 1284
Query: 375 GTRNLPVTPIVQSTYYRLACFFADRAQKGFVRVGSGDLFTEYCQNAIKDDIVKSNTHHVE 434
+ LP+ +++ +L F DR K + +C S VE
Sbjct: 1285 EAQELPIIQVIERIQSKLKTEFDDRRLKS----------SSWCSVLTP----SSERRMVE 1422
Query: 435 QFNR-ERYTFSVREIVNYREGRPMRTFKVDLRAGWCDCGKFQALHLPCSHVIAACSSFRH 493
NR Y + V + R+ V++ + C C +Q +PCSH +AA S R
Sbjct: 1423 AINRASTYQVLKSDEVEFEVISADRSDIVNIGSHSCSCRDWQLYGIPCSHAVAALISSRK 1602
Query: 494 D 494
D
Sbjct: 1603 D 1605
>CB891859 similar to GP|6175165|gb| Mutator-like transposase {Arabidopsis
thaliana}, partial (27%)
Length = 625
Score = 55.5 bits (132), Expect = 6e-08
Identities = 36/143 (25%), Positives = 69/143 (48%)
Frame = +1
Query: 329 IKKANQRALDWVDNIPKENWTQAYDEGRRWGHMTSNIVESWNFVFKGTRNLPVTPIVQST 388
I++ +Q A W+ +P W AY EG R+GH+T+NIVE+ N LP+ +++
Sbjct: 232 IEEISQDAAYWIRRVPPRLWATAYFEGHRFGHLTANIVEALNSWILEASGLPIIQMMECI 411
Query: 389 YYRLACFFADRAQKGFVRVGSGDLFTEYCQNAIKDDIVKSNTHHVEQFNRERYTFSVREI 448
+L +F +R + + + ++ + + ++ T+ V + N + E+
Sbjct: 412 RRQLMTWFNERRETSMQWT---SILVPSAERSVAEALERARTYQVLRANEAEF-----EV 567
Query: 449 VNYREGRPMRTFKVDLRAGWCDC 471
+++ EG T VD+R C C
Sbjct: 568 ISH-EG----TNIVDIRNRCCLC 621
>AL375901 similar to GP|9759134|dbj mutator-like transposase-like protein
{Arabidopsis thaliana}, partial (27%)
Length = 493
Score = 42.7 bits (99), Expect = 4e-04
Identities = 24/91 (26%), Positives = 44/91 (47%), Gaps = 1/91 (1%)
Frame = +3
Query: 314 IYALNVPLFDYYRGVIKKANQRALDWVDNIPKENWTQAYDEGRRWGHMTSNIVE-SWNFV 372
+YAL F+ + + +Q + W + P W AY +G R+GH T + E +N+
Sbjct: 108 VYALTAAEFESKITEMIEVSQDVISWFQHFPPFLWAVAYFDGVRYGHFTLGVTELLYNWA 287
Query: 373 FKGTRNLPVTPIVQSTYYRLACFFADRAQKG 403
+ LPV +++ ++ +F DR + G
Sbjct: 288 LE-CHELPVVQMMEYIRQQMTSWFNDRREVG 377
>AL375902 similar to GP|9759134|dbj mutator-like transposase-like protein
{Arabidopsis thaliana}, partial (20%)
Length = 542
Score = 38.1 bits (87), Expect = 0.009
Identities = 26/101 (25%), Positives = 39/101 (37%), Gaps = 10/101 (9%)
Frame = +2
Query: 465 RAGWCDCGKFQALHLPCSHVIAACSSFRHDYTTLIPGVLKNESVYSIYNTTFKVVQDKSY 524
R+ C C ++Q PC+H AA S H+ +S Y+ + DKS
Sbjct: 2 RSRECSCRRWQLYGYPCAHAAAALISCGHNAHMFAEPCFTVQSYRMAYSQMIYPIPDKSQ 181
Query: 525 WLPYDG----------PVLCHNPNMRRLKKGRPNSTRIRTE 555
W + ++ H P +RR GRP +R E
Sbjct: 182 WREHGEGAEGGGGARVDIVIHPPKIRR-PPGRPKKKVLRVE 301
>TC81234 similar to GP|6752888|gb|AAF27920.1| unknown {Malus x domestica},
partial (50%)
Length = 1149
Score = 30.8 bits (68), Expect = 1.5
Identities = 14/30 (46%), Positives = 21/30 (69%)
Frame = -3
Query: 527 PYDGPVLCHNPNMRRLKKGRPNSTRIRTEM 556
P+ PVLCH PNM + K+ RP + +I T++
Sbjct: 313 PFPKPVLCHAPNM*K-KQHRPTTIKICTKL 227
>TC81835 similar to PIR|T48059|T48059 ABC transporter-like protein -
Arabidopsis thaliana, partial (18%)
Length = 1193
Score = 29.6 bits (65), Expect = 3.4
Identities = 24/69 (34%), Positives = 34/69 (48%), Gaps = 2/69 (2%)
Frame = +3
Query: 412 LFTEYCQNAIKDDIVKSNTHHVEQFNRERYTFSVREIVNYREGRPMRTFKVD--LRAGWC 469
+F E A+KD V TH V+ + +V I+ REGR +++ K D L+AG
Sbjct: 690 IFKECIMGALKDKTVLLVTHQVD------FLHNVDSIMVMREGRVVQSGKYDELLKAG-L 848
Query: 470 DCGKFQALH 478
D G A H
Sbjct: 849 DFGALVAAH 875
>TC76350 similar to GP|8132441|gb|AAF73291.1| extensin {Pisum sativum},
partial (63%)
Length = 1008
Score = 29.6 bits (65), Expect = 3.4
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Frame = -2
Query: 422 KDDIVKSNTHHVE----QFNRERYTFSVREIVNYREGRPMRTFKVD------LRAGWCDC 471
K+++VKS + VE Q E YT + E+VN RE T+K + G C C
Sbjct: 701 KEEVVKSRYNVVEVVSMQEEEETYTCKLVEVVNRREEVVTCTYKPGEVVSRRVEVGTCIC 522
Query: 472 GKFQALHLPCSHVIAAC 488
+ + + V C
Sbjct: 521 KRVEVVSRRVEEVTCTC 471
>TC90861 similar to GP|20466223|gb|AAM20429.1 auxilin-like protein
{Arabidopsis thaliana}, partial (5%)
Length = 658
Score = 28.5 bits (62), Expect = 7.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 246 HKMETTKRFQSPLRLSKVRQRR 267
HK+ETTK+ P+R+S RQ +
Sbjct: 578 HKLETTKKMLKPIRISDHRQTK 513
>TC86178 similar to GP|6752888|gb|AAF27920.1| unknown {Malus x domestica},
partial (29%)
Length = 691
Score = 28.5 bits (62), Expect = 7.5
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1
Query: 527 PYDGPVLCHNPNMRRLKKGRPNSTRIRTEM 556
P+ P+LCH PN+ + K+ +P + +I TE+
Sbjct: 256 PFPKPLLCHAPNI*K-KQHKPTTIKICTEL 170
>TC86179 similar to GP|6752888|gb|AAF27920.1| unknown {Malus x domestica},
partial (60%)
Length = 1297
Score = 28.5 bits (62), Expect = 7.5
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -3
Query: 527 PYDGPVLCHNPNMRRLKKGRPNSTRIRTEM 556
P+ P+LCH PN+ + K+ +P + +I TE+
Sbjct: 269 PFPKPLLCHAPNI*K-KQHKPTTIKICTEL 183
>BF646328 similar to PIR|F84533|F845 Mutator-like transposase [imported] -
Arabidopsis thaliana, partial (3%)
Length = 636
Score = 28.1 bits (61), Expect = 9.8
Identities = 12/39 (30%), Positives = 19/39 (47%)
Frame = -1
Query: 447 EIVNYREGRPMRTFKVDLRAGWCDCGKFQALHLPCSHVI 485
E+ N+ + V+L C C K+ +PC+HVI
Sbjct: 450 EMNNFNVSNETNKYIVNLAQRTCACRKWNLTGIPCAHVI 334
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.339 0.146 0.487
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,289,466
Number of Sequences: 36976
Number of extensions: 250233
Number of successful extensions: 1881
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 493
Number of HSP's gapped (non-prelim): 1451
length of query: 584
length of database: 9,014,727
effective HSP length: 101
effective length of query: 483
effective length of database: 5,280,151
effective search space: 2550312933
effective search space used: 2550312933
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 61 (28.1 bits)
Medicago: description of AC140913.5