BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140913.1 - phase: 0 /pseudo
(695 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG648535 similar to PIR|T12184|T12 probable transcription factor... 253 e-121
BE941393 similar to PIR|T12184|T121 probable transcription facto... 179 2e-45
TC90720 similar to PIR|C96511|C96511 probable heat shock transcr... 32 0.82
TC89501 similar to GP|12040650|gb|AAB41023.2 phototropin-like pr... 30 4.1
BG452320 weakly similar to GP|6041848|gb|A hypothetical protein ... 29 7.0
AL365763 similar to GP|13161403|dbj CPRD49 {Vigna unguiculata}, ... 29 7.0
TC89959 similar to GP|15795137|dbj|BAB02515. transporter-like pr... 29 7.0
TC77126 homologue to GP|8954295|gb|AAD27880.2| photosystem I rea... 29 7.0
TC91097 homologue to GP|16648734|gb|AAL25559.1 AT4g23890/T32A16_... 29 7.0
TC87901 similar to PIR|A84751|A84751 probable SF16 protein (Heli... 28 9.1
TC88663 similar to GP|8778473|gb|AAF79481.1| F1L3.23 {Arabidopsi... 28 9.1
>BG648535 similar to PIR|T12184|T12 probable transcription factor - fava
bean, partial (26%)
Length = 798
Score = 253 bits (646), Expect(2) = e-121
Identities = 128/128 (100%), Positives = 128/128 (100%)
Frame = +2
Query: 113 PVKLDGSGRMIPKNF*ILLTR*EKPTARWEMQLPNLILAILQC*L*CKGTILIWNWVQ*S 172
PVKLDGSGRMIPKNF*ILLTR*EKPTARWEMQLPNLILAILQC*L*CKGTILIWNWVQ*S
Sbjct: 320 PVKLDGSGRMIPKNF*ILLTR*EKPTARWEMQLPNLILAILQC*L*CKGTILIWNWVQ*S 499
Query: 173 CQLKPSLVMELLLLTSISQRIMFIQIKKFGYWWPKLITLRSLHASSALSK*TFS*MEKEF 232
CQLKPSLVMELLLLTSISQRIMFIQIKKFGYWWPKLITLRSLHASSALSK*TFS*MEKEF
Sbjct: 500 CQLKPSLVMELLLLTSISQRIMFIQIKKFGYWWPKLITLRSLHASSALSK*TFS*MEKEF 679
Query: 233 IQGPTFEW 240
IQGPTFEW
Sbjct: 680 IQGPTFEW 703
Score = 201 bits (511), Expect(2) = e-121
Identities = 103/105 (98%), Positives = 103/105 (98%)
Frame = +1
Query: 8 PLSTLPESGAMTATANPVSPSLVNLYRITKVLERLATHFVPGNRSDAFEFFNLCLSLSRG 67
PLSTL SGAMTATANPVSPSLVNLYRITKVLERLATHFVPGNRSDAFEFFNLCLSLSRG
Sbjct: 1 PLSTLT*SGAMTATANPVSPSLVNLYRITKVLERLATHFVPGNRSDAFEFFNLCLSLSRG 180
Query: 68 IDYALANGEVPLKANELPILMKQMYQRKTDDHSQAAVMVLMISVK 112
IDYALANGEVPLKANELPILMKQMYQRKTDDHSQAAVMVLMISVK
Sbjct: 181 IDYALANGEVPLKANELPILMKQMYQRKTDDHSQAAVMVLMISVK 315
>BE941393 similar to PIR|T12184|T121 probable transcription factor - fava
bean, partial (8%)
Length = 515
Score = 179 bits (455), Expect = 2e-45
Identities = 90/91 (98%), Positives = 91/91 (99%)
Frame = +2
Query: 1 METNTSSPLSTLPESGAMTATANPVSPSLVNLYRITKVLERLATHFVPGNRSDAFEFFNL 60
METNTSSPLSTLPESGAMTATANPVSPSLVNLYRITKVLERLATHFVPGNRSDAFEFFNL
Sbjct: 26 METNTSSPLSTLPESGAMTATANPVSPSLVNLYRITKVLERLATHFVPGNRSDAFEFFNL 205
Query: 61 CLSLSRGIDYALANGEVPLKANELPILMKQM 91
CLSLSRGIDYALANGEVPLKANELPILMKQ+
Sbjct: 206 CLSLSRGIDYALANGEVPLKANELPILMKQV 298
Score = 46.2 bits (108), Expect = 4e-05
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = +3
Query: 90 QMYQRKTDDHSQAAVMVLMISVK 112
QMYQRKTDDHSQAAVMV MISVK
Sbjct: 441 QMYQRKTDDHSQAAVMVXMISVK 509
>TC90720 similar to PIR|C96511|C96511 probable heat shock transcription
factor [imported] - Arabidopsis thaliana, partial (41%)
Length = 880
Score = 32.0 bits (71), Expect = 0.82
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +1
Query: 621 LLS*QQHRFVLLMLCCQSLYWVRVLGMHSLFNLHLKWQLSIFYIIFP*KENITTAHII 678
LLS*Q+H +L++L +LY ++ +H LF LS+ I FP +ITT+ +
Sbjct: 64 LLS*QRHTNLLMILSLTTLYLGVMMKLHLLFG----GLLSLLEIFFPIFSSITTSQAL 225
>TC89501 similar to GP|12040650|gb|AAB41023.2 phototropin-like protein PsPK4
{Pisum sativum}, partial (18%)
Length = 932
Score = 29.6 bits (65), Expect = 4.1
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2
Query: 5 TSSPLSTLPESGAMTATANPVSPSLVNLYRI 35
++S LST P S A+ A A PVSPSL+ ++ +
Sbjct: 577 SASVLSTKPHSAALCAAA-PVSPSLIAIHEV 488
>BG452320 weakly similar to GP|6041848|gb|A hypothetical protein {Arabidopsis
thaliana}, partial (15%)
Length = 679
Score = 28.9 bits (63), Expect = 7.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 429 LILFPILWTSPTMIMIWT*CALMK 452
L++F +LW SP +++W C L K
Sbjct: 251 LLIFLLLWPSPPYLLLWMPCHLKK 322
>AL365763 similar to GP|13161403|dbj CPRD49 {Vigna unguiculata}, partial
(20%)
Length = 503
Score = 28.9 bits (63), Expect = 7.0
Identities = 9/22 (40%), Positives = 14/22 (62%)
Frame = +3
Query: 496 WLMLFLLYLIKKQRVMTMFLPC 517
WL+ F +Y K +R+ M+ PC
Sbjct: 252 WLLFFAIYFAKNERISIMWSPC 317
>TC89959 similar to GP|15795137|dbj|BAB02515. transporter-like protein
{Arabidopsis thaliana}, partial (87%)
Length = 1681
Score = 28.9 bits (63), Expect = 7.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 425 LLAPLILFPILWTSPTMIMIWT*CALMKLQIESLFRLLL 463
+L PLI+ P L+ P ++++W +LFRLL+
Sbjct: 442 VLCPLIMSPCLFFVPLLVLVWEAVLCCPRGFLNLFRLLI 558
>TC77126 homologue to GP|8954295|gb|AAD27880.2| photosystem I reaction
center subunit III {Vigna radiata}, partial (85%)
Length = 1007
Score = 28.9 bits (63), Expect = 7.0
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 621 LLS*QQHRF-VLLMLCCQSLYWVRVLGMHSLFNLHLKW 657
LL HR+ V L LCC W+RVL + L L+W
Sbjct: 205 LLDLSLHRWLVFLGLCCSG*CWLRVLVFEVILVLGLRW 92
>TC91097 homologue to GP|16648734|gb|AAL25559.1 AT4g23890/T32A16_60
{Arabidopsis thaliana}, partial (25%)
Length = 665
Score = 28.9 bits (63), Expect = 7.0
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 484 LVPLQLLLRFLNWLMLFLLY-LIKKQRVMTMFLPCITSF 521
L+ L L F +W+MLFLLY L V +FL CI F
Sbjct: 311 LIHLSFLALF-HWMMLFLLYQLAFSALVQVLFLHCIILF 198
>TC87901 similar to PIR|A84751|A84751 probable SF16 protein (Helianthus
annuus) [imported] - Arabidopsis thaliana, partial (60%)
Length = 1434
Score = 28.5 bits (62), Expect = 9.1
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 175 LKPSLVMELLLLTSISQRIMFIQIKKFGYWWPKLITLR-SLHASSALSK*TFS 226
L PSL+ +LL S+R F I G+W+ +++LR S S SK T S
Sbjct: 113 LYPSLLQDLLSGII*SERSCFTSIMGSGFWFKVIVSLRKSKDRRSKKSKGTLS 271
>TC88663 similar to GP|8778473|gb|AAF79481.1| F1L3.23 {Arabidopsis
thaliana}, partial (34%)
Length = 946
Score = 28.5 bits (62), Expect = 9.1
Identities = 28/94 (29%), Positives = 43/94 (44%), Gaps = 2/94 (2%)
Frame = +2
Query: 414 IVKWNRLNNKNLLAPLIL--FPILWTSPTMIMIWT*CALMKLQIESLFRLLLLLAFK*RR 471
+VK +L N L PL+L +L ++++ L+ L + L R +LLL K R
Sbjct: 467 LVKTLKLLRVNHLGPLLLQAMLLLLRLLLLVLLLLLLVLLLLLLLLLLRSMLLLHLKLRL 646
Query: 472 TFGLVFILPTVGLVPLQLLLRFLNWLMLFLLYLI 505
FGL+ + LLR + L F+L I
Sbjct: 647 RFGLLLV----------SLLRMMTMLPRFILSTI 718
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.357 0.160 0.557
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,391,887
Number of Sequences: 36976
Number of extensions: 374481
Number of successful extensions: 4737
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2026
Number of HSP's successfully gapped in prelim test: 239
Number of HSP's that attempted gapping in prelim test: 2632
Number of HSP's gapped (non-prelim): 2416
length of query: 695
length of database: 9,014,727
effective HSP length: 103
effective length of query: 592
effective length of database: 5,206,199
effective search space: 3082069808
effective search space used: 3082069808
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 62 (28.5 bits)
Medicago: description of AC140913.1