TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140850.4 - phase: 0 /pseudo
         (1010 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana...    63  6e-10
BG586326 similar to PIR|G84493|G8 probable retroelement pol poly...    35  0.19
TC77650 similar to GP|9795587|gb|AAF98405.1| Unknown protein {Ar...    30  4.7
TC78047 similar to PIR|T02706|T02706 hypothetical protein At2g03...    30  6.1
TC83908 similar to PIR|T47792|T47792 hypothetical protein F17J16...    29  8.0

>BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana}, partial
           (10%)
          Length = 624

 Score = 62.8 bits (151), Expect = 6e-10
 Identities = 57/191 (29%), Positives = 87/191 (44%)
 Frame = +3

Query: 703 GMNHTCLKLERITSCVGVLIMRRQRKYCGNVTIPPMEVTSTGRELLQKYSNPVSIGQNFS 762
           GM+H+C+    I    GVL+ +R + Y     +P         +  ++ +  VS G   S
Sbjct: 27  GMSHSCISSVPIIFT*GVLLKKRYQAYSSTAMVPTTRDILL*AKPFRRSNKLVSGGLRCS 206

Query: 763 KMLTLIASFVMNVKEPDQCQSGMKCLYKVFLKWKCLIVGVLILLAPSHHRTQMNTSW*P* 822
           KM T  +  V++ ++ +    GM+C      K + L  G  I    SH  T ++TS    
Sbjct: 207 KMPTPSSLSVIHARDREISARGMRCHRTSSWKLRYLTCGGSISWDHSHPLTTISTSLLLL 386

Query: 823 IMSQSGWKPSRRQKPTARQW*SSSKRISSPG*EHQEF**VMEAHVSATHSFLRH*IIMV* 882
               SG +P + Q+ T + W*  S   S      QE+* VME H+S+T      *  M *
Sbjct: 387 TTFPSG*RP*QVQQTTPQWW*RCSNLSSFQDLGCQEW*LVMEDHISSTKCSRSC*RRMA* 566

Query: 883 NTR*HHHTILK 893
           +TR   HT L+
Sbjct: 567 DTRWRQHTTLR 599


>BG586326 similar to PIR|G84493|G8 probable retroelement pol polyprotein
           [imported] - Arabidopsis thaliana, partial (13%)
          Length = 736

 Score = 34.7 bits (78), Expect = 0.19
 Identities = 20/49 (40%), Positives = 25/49 (50%)
 Frame = -2

Query: 3   NNIHRMSLGFESDLVRRYLIAAWSV*TTILEPTRYERNFSNAYTIASNS 51
           N+IH + L F S  V+ Y    WSV    L P +YER    A T A+ S
Sbjct: 318 NSIHLLCLKFNSGWVKIYFRLLWSVCI*TLAPYKYERQIFKANTTAAIS 172


>TC77650 similar to GP|9795587|gb|AAF98405.1| Unknown protein {Arabidopsis
            thaliana}, partial (91%)
          Length = 1530

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = -2

Query: 687  IGNNARNFSMKLFTMYGMNHTCLKLERITSCVGVLIMRRQRKYCGNVTIPPMEVTSTGRE 746
            IGNN  N  + + +  G + TC+ L        V    RQR     + +P ++ +S+ + 
Sbjct: 1340 IGNNVGNNHLHMPSGVGRSFTCICLYIHCQFSDVTSPPRQRMTDPPLHVPTLQHSSSDKP 1161

Query: 747  LLQKYSNPVS 756
            L   Y NP++
Sbjct: 1160 LTTPYKNPLA 1131


>TC78047 similar to PIR|T02706|T02706 hypothetical protein At2g03200
           [imported] - Arabidopsis thaliana, partial (67%)
          Length = 1727

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 13/43 (30%), Positives = 22/43 (50%)
 Frame = -1

Query: 682 FLKIIIGNNARNFSMKLFTMYGMNHTCLKLERITSCVGVLIMR 724
           +LK ++  N  + +      +  NH C KLE++  C+G   MR
Sbjct: 818 YLKYLVS*NNHHMNK-----HNCNHCCCKLEKVKHCIGCYYMR 705


>TC83908 similar to PIR|T47792|T47792 hypothetical protein F17J16.150 -
           Arabidopsis thaliana, partial (12%)
          Length = 841

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 15/43 (34%), Positives = 22/43 (50%)
 Frame = +1

Query: 569 NARTKFSMLYIMRVKF*MKNKLIMLPLKKSCSQ*YMHWKNFVH 611
           N +TK   LY++  K    +  I +   K  S+* M+WKN  H
Sbjct: 535 NLKTKIMPLYLLAEKLCRTST*IRIITMKKLSK*EMYWKNSTH 663


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.358    0.155    0.550 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,802,731
Number of Sequences: 36976
Number of extensions: 499429
Number of successful extensions: 5104
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 205
Number of HSP's that attempted gapping in prelim test: 3532
Number of HSP's gapped (non-prelim): 1878
length of query: 1010
length of database: 9,014,727
effective HSP length: 106
effective length of query: 904
effective length of database: 5,095,271
effective search space: 4606124984
effective search space used: 4606124984
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 63 (28.9 bits)