TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140850.3 + phase: 0 /pseudo
         (650 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB065285 weakly similar to PIR|A84500|A84 probable retroelement ...   218  4e-57
AL367832 weakly similar to GP|14091845|gb Putative retroelement ...   101  2e-50
AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis...    69  7e-12
TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna...    56  5e-08
BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin...    54  2e-07
BG644740 similar to PIR|A84460|A84 probable retroelement pol pol...    49  8e-06
BF003557 weakly similar to GP|21554257|gb| unknown {Arabidopsis ...    32  1.00
AL366988                                                               30  2.9

>CB065285 weakly similar to PIR|A84500|A84 probable retroelement gag/pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (2%)
          Length = 592

 Score =  218 bits (556), Expect = 4e-57
 Identities = 119/144 (82%), Positives = 123/144 (84%)
 Frame = -3

Query: 507 NQKTAKNR*LVKVWIPIASGD*SSMVLSMLMVKESGQSLYPRRGITSLLPPGFCSNVQTI 566
           NQKTAKNR*LVKV IPIA+G *S MVLSMLMVKE  QSLYPRRGITSLLPPGFCSNVQTI
Sbjct: 590 NQKTAKNR*LVKVQIPIANGV*SLMVLSMLMVKELEQSLYPRRGITSLLPPGFCSNVQTI 411

Query: 567 WPNTKRVSLGSMKQLT*ESNTSTSMEIRHLSSTR*RVNGRPTMPS*FLTVIMRDVC*HIL 626
           W + K VSLGS KQLT*ESNTSTSMEI HLSSTR RVNGRPTMP *FLT  MR VC* IL
Sbjct: 410 WLSMKHVSLGSRKQLT*ESNTSTSMEILHLSSTRSRVNGRPTMPI*FLTATMRGVC*PIL 231

Query: 627 QRSNCTISLGMRTKWLMLLLLYPP 650
           Q+ +CTI L  RTKWLML LLYPP
Sbjct: 230 QKLSCTIFLVTRTKWLMLWLLYPP 159


>AL367832 weakly similar to GP|14091845|gb Putative retroelement {Oryza
           sativa}, partial (2%)
          Length = 384

 Score =  101 bits (252), Expect(3) = 2e-50
 Identities = 47/49 (95%), Positives = 48/49 (97%)
 Frame = -3

Query: 5   P*RD*AYQPRYRGEQARDQGRCCSRGRG*KEDLPAPPRIPGYFCMVV*R 53
           P RD*AYQPRYRGEQARDQGRCCSRGRG*KEDLPAPPRIPGYFCM+V*R
Sbjct: 358 PGRD*AYQPRYRGEQARDQGRCCSRGRG*KEDLPAPPRIPGYFCMLV*R 212



 Score = 86.3 bits (212), Expect(3) = 2e-50
 Identities = 42/43 (97%), Positives = 43/43 (99%)
 Frame = -2

Query: 53  RLWNIGSQQSLNVLPSGRN*EGLIQIWLSRLRVRFKSRLMRVF 95
           +LWNIGSQQSLNVLPSGRN*EGLIQIWLSRLRVRFKSRLMRVF
Sbjct: 191 KLWNIGSQQSLNVLPSGRN*EGLIQIWLSRLRVRFKSRLMRVF 63



 Score = 51.2 bits (121), Expect(3) = 2e-50
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = -1

Query: 95  FLMTVEYPEWVANIVPVPKKDG 116
           FLMTVEYPEWVANIVPVPKKDG
Sbjct: 66  FLMTVEYPEWVANIVPVPKKDG 1


>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
           chromosome II BAC F26H6; putative retroelement pol
           polyprotein, partial (1%)
          Length = 636

 Score = 68.6 bits (166), Expect = 7e-12
 Identities = 64/169 (37%), Positives = 78/169 (45%)
 Frame = -3

Query: 411 RLVVLWPGPPNACVIIW*IIQLG*YPEWIR*SISSRNLLLLGRLHAGKCSCPNMTLCSRL 470
           R VVL PG P+A VII  I  LG Y +WI+ S   R+ L    LH G+C   NM   +  
Sbjct: 634 RHVVL*PGLPSASVII*LITLLGWYLKWIQSSTYLRSPL*QEGLHGGRCYYRNMISSTVP 455

Query: 471 KKQSKVAFLPIILPTNLLMITNQLSLISPMKRSCI*NQKTAKNR*LVKVWIPIASGD*SS 530
           ++Q K  FL I   TN L   +  SL   MKR CI*  K   +    KV I I  G *  
Sbjct: 454 RRQLKAVFLLITWLTNHLKTIDLSSLTFLMKRLCI*R*KIVTSHYSEKVLIQIQCGV*YL 275

Query: 531 MVLSMLMVKESGQSLYPRRGITSLLPPGFCSNVQTIWPNTKRVSLGSMK 579
           M LSM      GQ     + +TSL         +T   NTK  S  S +
Sbjct: 274 MGLSMYTATA*GQYSLLLKVLTSLSQQDSGLTARTTSLNTKPASWASTR 128


>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
           alternata}, partial (21%)
          Length = 1540

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 27/75 (36%), Positives = 46/75 (61%)
 Frame = +1

Query: 106 ANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNL 165
           A ++ V K  G +R CVD+R LN  + KD +PLP I   +   A ++ F+ +D  + ++ 
Sbjct: 577 APVLFVRKPGGGIRFCVDYRALNAITKKDRYPLPLISETLRRVAGARWFTKLDVVAAFHK 756

Query: 166 IKMSPEDREKTSFIT 180
           +++  ED+EKT+F T
Sbjct: 757 MRIKDEDQEKTAFRT 801


>BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin cluster;
           Ty3-Gypsy type {Oryza sativa}, partial (15%)
          Length = 716

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 36/99 (36%), Positives = 54/99 (54%)
 Frame = +2

Query: 80  LSRLRVRFKSRLMRVFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLP 139
           L  L+++ K  L + F+    YP  V  ++ + KKDG +RM +D+  LN  + K  +PLP
Sbjct: 110 LKVLKLQLKDLLEKGFIQPSIYP*GVV-VLFLKKKDGFLRMSIDYPQLNNVNIKIKYPLP 286

Query: 140 HIDVLVDNTAQSKVFSFMDGFSGYNLIKMSPEDREKTSF 178
            ID L DN   SK F  +D   G +  ++  ED  KT+F
Sbjct: 287 LIDELFDNLQGSKWFFKIDLRLG*HQHRVIGEDVPKTAF 403


>BG644740 similar to PIR|A84460|A84 probable retroelement pol polyprotein
           [imported] - Arabidopsis thaliana, partial (4%)
          Length = 754

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 22/49 (44%), Positives = 30/49 (60%)
 Frame = -1

Query: 106 ANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVF 154
           A ++ V KKDG  RMC+D+R  NK + K+ +PLP ID L D   +   F
Sbjct: 238 AALLFVRKKDGYFRMCIDYRQFNKVTTKNKYPLPRIDNLFDKIQEDCYF 92


>BF003557 weakly similar to GP|21554257|gb| unknown {Arabidopsis thaliana},
           partial (49%)
          Length = 464

 Score = 31.6 bits (70), Expect = 1.00
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
 Frame = -2

Query: 567 WPNTKRVSLGSMKQLT*ESN----------TSTSMEIRHLSSTR*RVNGRPTMPS*FLTV 616
           WPN    S  +   LT E+N          TST ++IR +  T  R  G PTM S FL +
Sbjct: 328 WPNNHAPSKLNDPGLTMETNPRTFS*KATVTSTDLQIREI*FTDFRRKGFPTMASIFLIL 149

Query: 617 IMR 619
           I R
Sbjct: 148 IRR 140


>AL366988 
          Length = 405

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/40 (37%), Positives = 22/40 (54%), Gaps = 1/40 (2%)
 Frame = -3

Query: 343 IASRITCCNHLSLSHPWKEGL*LCICQCLMNLW-DAYLVN 381
           I + I CC HL + HP+     +  C+C + L   AYL+N
Sbjct: 271 IIAYIRCCTHLDIKHPF-----ILRCRCYIELI*HAYLIN 167


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.347    0.151    0.514 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,744,537
Number of Sequences: 36976
Number of extensions: 327620
Number of successful extensions: 2849
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1533
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 1288
Number of HSP's gapped (non-prelim): 1718
length of query: 650
length of database: 9,014,727
effective HSP length: 102
effective length of query: 548
effective length of database: 5,243,175
effective search space: 2873259900
effective search space used: 2873259900
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 61 (28.1 bits)