TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140773.4 + phase: 0 /pseudo
         (1194 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thalia...    44  4e-04
BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana...    32  1.9
TC80286 similar to GP|12484219|gb|AAG54008.1 unknown protein {Ar...    30  5.6
BG587150 similar to GP|13592175|gb ppg3 {Leishmania major}, part...    30  5.6

>AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thaliana
           chromosome II BAC F26H6; putative retroelement pol
           polyprotein, partial (1%)
          Length = 488

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 19/38 (50%), Positives = 26/38 (68%)
 Frame = +1

Query: 77  TFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWK 114
           TF V+   A+++ LLGR WIH  GAV ST+HQ++   K
Sbjct: 4   TFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFVK 117


>BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana}, partial
            (10%)
          Length = 624

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 1155 TKWIEAI--PLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
            +KW+EAI  P  D T   V+   +  I  RFG+P  + +D G
Sbjct: 395  SKWVEAIASPTNDATV--VVKMFKSVIFPRFGVPRVVISDGG 514


>TC80286 similar to GP|12484219|gb|AAG54008.1 unknown protein {Arabidopsis
           thaliana}, partial (41%)
          Length = 669

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 167 SMKLQPEAGFVWEKEFRDHDFVMVNQQEAQLDNED 201
           S + Q  +GFVW+  F   +   +NQ + Q + ED
Sbjct: 107 SFRRQGSSGFVWDDRFLQEEINKMNQNQNQQEQED 211


>BG587150 similar to GP|13592175|gb ppg3 {Leishmania major}, partial (1%)
          Length = 754

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
 Frame = +2

Query: 8   INGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSLGAIK-LE 66
           + G+     L + GA+V +LP+     +GL    + P     T  + S  +S G I+ LE
Sbjct: 371 MKGIEFPHALCNTGASVIILPRDMADHLGL---KVDPSKESFTFVDCSQRSSGGIIRDLE 541

Query: 67  LMVGSTKRITTFMVVPSKANFN--VLLGREWIH-GVGAV 102
           + +G+      F V+  K N+N  +LL R ++  G G+V
Sbjct: 542 VQIGNALVPVDFHVLDIKINWNSSLLLRRAFLSTGRGSV 658


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.348    0.153    0.528 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,521,575
Number of Sequences: 36976
Number of extensions: 512895
Number of successful extensions: 3794
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1532
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 2224
Number of HSP's gapped (non-prelim): 1766
length of query: 1194
length of database: 9,014,727
effective HSP length: 107
effective length of query: 1087
effective length of database: 5,058,295
effective search space: 5498366665
effective search space used: 5498366665
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 64 (29.3 bits)