TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140773.3 + phase: 0 /partial
         (140 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF003873 similar to GP|14715222|em putative polyprotein {Cicer a...   228  6e-61
BG644699 similar to PIR|T07863|T078 probable polyprotein - pinea...    60  2e-10
BG587176 weakly similar to PIR|G84493|G84 probable retroelement ...    54  2e-08
TC76794 similar to GP|7416846|dbj|BAA94084.1 NAD-dependent sorbi...    28  1.6
TC92923 similar to GP|6466937|gb|AAF13073.1| putative retroeleme...    26  6.0
TC79568 weakly similar to GP|21689747|gb|AAM67517.1 unknown prot...    26  6.0
BQ135566                                                               25  7.9

>BF003873 similar to GP|14715222|em putative polyprotein {Cicer arietinum},
           partial (82%)
          Length = 559

 Score =  228 bits (581), Expect = 6e-61
 Identities = 111/125 (88%), Positives = 118/125 (93%)
 Frame = +2

Query: 15  GVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVSQLRKYIPDPSHV 74
           GVGRALKSKKLT+RFIGPYQIS+RVGTV YRVGL P+L NLHDVFHVSQLRKY+PDPSHV
Sbjct: 2   GVGRALKSKKLTVRFIGPYQISERVGTVAYRVGLPPHLLNLHDVFHVSQLRKYVPDPSHV 181

Query: 75  IQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGESLTWELESKKLES 134
           IQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLV+ VW+ A GESLTWELESK +ES
Sbjct: 182 IQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVRVVWDRANGESLTWELESKMVES 361

Query: 135 YPELF 139
           YPELF
Sbjct: 362 YPELF 376


>BG644699 similar to PIR|T07863|T078 probable polyprotein - pineapple
          retrotransposon dea1 (fragment), partial (5%)
          Length = 231

 Score = 60.5 bits (145), Expect = 2e-10
 Identities = 30/74 (40%), Positives = 46/74 (61%), Gaps = 1/74 (1%)
 Frame = +2

Query: 4  DHVFFRVTPVT-GVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVS 62
          + V  +V P   G  R  K  KL+LR+IGP+++  R+G V Y + L P LS +H VFHVS
Sbjct: 2  EQVLLKVLPTERGDCRFGKRGKLSLRYIGPFEVIKRIGEVAYELALPPGLSGVHPVFHVS 181

Query: 63 QLRKYIPDPSHVIQ 76
            ++Y  D +++I+
Sbjct: 182MFKRYHGDGNYIIR 223


>BG587176 weakly similar to PIR|G84493|G84 probable retroelement pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (1%)
          Length = 729

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 26/54 (48%), Positives = 34/54 (62%)
 Frame = -1

Query: 86  LTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGESLTWELESKKLESYPELF 139
           L +ET PVRI DR  K +R K I +VK VW+ +  E +TWE E++    YPE F
Sbjct: 717 LDLETRPVRILDRMEKAMRKKPIQMVKIVWDCSGREEITWETEARMKADYPEWF 556


>TC76794 similar to GP|7416846|dbj|BAA94084.1 NAD-dependent sorbitol
            dehydrogenase {Prunus persica}, partial (93%)
          Length = 1691

 Score = 27.7 bits (60), Expect = 1.6
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -2

Query: 53   SNLHDVFHVSQLRKYIPDPSH 73
            SNL ++FHVS  + Y+P+P++
Sbjct: 1690 SNLINIFHVS*FKVYVPNPTN 1628


>TC92923 similar to GP|6466937|gb|AAF13073.1| putative retroelement pol
           polyprotein {Arabidopsis thaliana}, partial (1%)
          Length = 625

 Score = 25.8 bits (55), Expect = 6.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 53  SNLHDVFHVSQLRKYIPDP 71
           S +H +FHVSQL++ +  P
Sbjct: 228 STIHSIFHVSQLKRAVWGP 284


>TC79568 weakly similar to GP|21689747|gb|AAM67517.1 unknown protein
           {Arabidopsis thaliana}, partial (25%)
          Length = 1192

 Score = 25.8 bits (55), Expect = 6.0
 Identities = 12/28 (42%), Positives = 17/28 (59%)
 Frame = +3

Query: 30  IGPYQISDRVGTVVYRVGLAPYLSNLHD 57
           +GP +I   +G V+  +GLAP    LHD
Sbjct: 702 LGPEEIGKVLGEVIGTLGLAPVHLVLHD 785


>BQ135566 
          Length = 930

 Score = 25.4 bits (54), Expect = 7.9
 Identities = 12/37 (32%), Positives = 19/37 (50%), Gaps = 7/37 (18%)
 Frame = +2

Query: 42  VVYRVGLAPYLSNLHDVFHVSQ-------LRKYIPDP 71
           ++Y +    Y+S L+ +FH  +       L  YIPDP
Sbjct: 692 IIYILSTTHYISLLYTIFHTHKITPNTIILYTYIPDP 802


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.324    0.143    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,817,231
Number of Sequences: 36976
Number of extensions: 42241
Number of successful extensions: 223
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of query: 140
length of database: 9,014,727
effective HSP length: 86
effective length of query: 54
effective length of database: 5,834,791
effective search space: 315078714
effective search space used: 315078714
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)