TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140772.6 + phase: 0 /partial
         (40 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB892155 similar to PIR|D86481|D86 hypothetical protein AAG28292...    59  3e-10
AJ497367 similar to GP|14140286|gb putative helicase {Oryza sati...    54  1e-08
BM814840 weakly similar to GP|15128241|db helicase-like protein ...    47  2e-06
CB892166 similar to GP|20197614|gb unknown protein {Arabidopsis ...    44  2e-05
TC84293 similar to GP|23617010|dbj|BAC20706. contains ESTs D4714...    26  3.0
AW256359                                                               25  6.6

>CB892155 similar to PIR|D86481|D86 hypothetical protein AAG28292.1
           [imported] - Arabidopsis thaliana, partial (4%)
          Length = 572

 Score = 59.3 bits (142), Expect = 3e-10
 Identities = 28/40 (70%), Positives = 34/40 (85%)
 Frame = -2

Query: 1   LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
           LYV +SRVTSR GLKILI++DDG+D  V S+V+YREVF N
Sbjct: 271 LYVALSRVTSREGLKILISNDDGEDDCVTSNVVYREVFHN 152


>AJ497367 similar to GP|14140286|gb putative helicase {Oryza sativa
          (japonica cultivar-group)}, partial (1%)
          Length = 543

 Score = 54.3 bits (129), Expect = 1e-08
 Identities = 25/40 (62%), Positives = 32/40 (79%)
 Frame = +1

Query: 1  LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
          LYV +SRVTSR GLKIL+  +DG+  N  S+V+Y+EVFRN
Sbjct: 34 LYVAVSRVTSRKGLKILLAHEDGNCMNTTSNVVYKEVFRN 153


>BM814840 weakly similar to GP|15128241|db helicase-like protein {Oryza
           sativa (japonica cultivar-group)}, partial (6%)
          Length = 733

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 21/39 (53%), Positives = 30/39 (76%)
 Frame = +3

Query: 1   LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFR 39
           LYV +SRV SR GLKILI D++G  ++   +V+Y+EVF+
Sbjct: 285 LYVAVSRVKSRSGLKILITDENGSPSSSTVNVVYQEVFQ 401


>CB892166 similar to GP|20197614|gb unknown protein {Arabidopsis thaliana},
           partial (3%)
          Length = 748

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 22/40 (55%), Positives = 32/40 (80%)
 Frame = -1

Query: 1   LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
           LYV ISRV+SR GLKIL+ D++GD  +  ++V+Y+ VF+N
Sbjct: 256 LYVAISRVSSRNGLKILMIDENGDCIDNTTNVVYK-VFQN 140


>TC84293 similar to GP|23617010|dbj|BAC20706. contains ESTs D47144(S12288)
           AU032626(S12288)~similar to Arabidopsis thaliana
           chromosome 5, partial (25%)
          Length = 830

 Score = 26.2 bits (56), Expect = 3.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 5   ISRVTSRGGLKILINDDDGD 24
           +   TSRG LK+ +++DDGD
Sbjct: 141 VYNTTSRGILKVALSNDDGD 200


>AW256359 
          Length = 411

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 1   LYVTISRVTSRGGLKILINDDDG 23
           +YV IS +   GG ++ +ND+DG
Sbjct: 356 VYVFIS*INLLGGTELPVNDEDG 288


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.318    0.139    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 753,550
Number of Sequences: 36976
Number of extensions: 4009
Number of successful extensions: 35
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of query: 40
length of database: 9,014,727
effective HSP length: 16
effective length of query: 24
effective length of database: 8,423,111
effective search space: 202154664
effective search space used: 202154664
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)