BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140721.12 - phase: 0
(109 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BE941280 weakly similar to GP|20197614|g unknown protein {Arabid... 42 4e-05
CA922316 similar to PIR|F96807|F968 unknown protein T32E8.10 [im... 27 1.2
TC92920 similar to GP|19916011|gb|AAM05485.1 cation efflux syste... 26 2.1
TC81271 weakly similar to GP|20197250|gb|AAC23649.2 Expressed pr... 26 2.1
TC85853 weakly similar to GP|7595348|gb|AAF64423.1| globulin-lik... 25 3.5
TC77261 homologue to GP|8777330|dbj|BAA96920.1 26S proteasome AA... 25 4.6
TC85852 weakly similar to GP|21593610|gb|AAM65577.1 globulin-lik... 25 4.6
TC82594 similar to GP|5262776|emb|CAB45881.1 berberine bridge en... 25 4.6
TC86562 similar to GP|21553404|gb|AAM62497.1 26S proteasome regu... 25 4.6
TC85936 homologue to GP|13537115|dbj|BAB40755. AtSUG1 {Arabidops... 25 4.6
>BE941280 weakly similar to GP|20197614|g unknown protein {Arabidopsis
thaliana}, partial (8%)
Length = 403
Score = 42.0 bits (97), Expect = 4e-05
Identities = 20/32 (62%), Positives = 23/32 (71%)
Frame = -1
Query: 64 LYGYGGTGKTFIWKTSLAVVRSKGLIVLNAAS 95
LY YGGT KTFIW+ A +RS+G IVL AS
Sbjct: 403 LYDYGGTEKTFIWRALSAALRSEGEIVLACAS 308
>CA922316 similar to PIR|F96807|F968 unknown protein T32E8.10 [imported] -
Arabidopsis thaliana, partial (7%)
Length = 746
Score = 26.9 bits (58), Expect = 1.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 52 DSKGFDDGGFFFLYGYGGTG 71
D G DDG FF G GGTG
Sbjct: 662 DELGEDDGDFFGSIGLGGTG 603
>TC92920 similar to GP|19916011|gb|AAM05485.1 cation efflux system protein
{Methanosarcina acetivorans str. C2A} [Methanosarcina
acetivorans C2A], partial (3%)
Length = 658
Score = 26.2 bits (56), Expect = 2.1
Identities = 12/36 (33%), Positives = 18/36 (49%)
Frame = -2
Query: 72 KTFIWKTSLAVVRSKGLIVLNAASRVYREFYWQQTL 107
KT WK L+++ L LN +++RE TL
Sbjct: 318 KTGYWKKCLSLIILLALFCLNTLQKIFRESQHNSTL 211
>TC81271 weakly similar to GP|20197250|gb|AAC23649.2 Expressed protein
{Arabidopsis thaliana}, partial (30%)
Length = 870
Score = 26.2 bits (56), Expect = 2.1
Identities = 10/15 (66%), Positives = 11/15 (72%)
Frame = -2
Query: 66 GYGGTGKTFIWKTSL 80
G GG G+T IWKT L
Sbjct: 188 GGGGAGRTVIWKTEL 144
>TC85853 weakly similar to GP|7595348|gb|AAF64423.1| globulin-like protein
{Cucumis melo}, partial (39%)
Length = 666
Score = 25.4 bits (54), Expect = 3.5
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 11 TFTNKLIVDELNYNKDELTK 30
+F+++LI N+NKDE+TK
Sbjct: 510 SFSSELISKVYNFNKDEVTK 569
>TC77261 homologue to GP|8777330|dbj|BAA96920.1 26S proteasome AAA-ATPase
subunit RPT3 {Arabidopsis thaliana}, partial (94%)
Length = 1575
Score = 25.0 bits (53), Expect = 4.6
Identities = 16/46 (34%), Positives = 21/46 (44%), Gaps = 5/46 (10%)
Frame = +2
Query: 47 HDKIMDSKGFDDGGFFFLYGYGGTGKTFIWK-----TSLAVVRSKG 87
H ++ G D LYG GTGKT + K T+ A +R G
Sbjct: 641 HHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVG 778
>TC85852 weakly similar to GP|21593610|gb|AAM65577.1 globulin-like protein
{Arabidopsis thaliana}, partial (17%)
Length = 1377
Score = 25.0 bits (53), Expect = 4.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 9 MPTFTNKLIVDELNYNKDELTK 30
+ +F++ LI N+NKDE+TK
Sbjct: 488 LSSFSSDLISKVYNFNKDEVTK 553
>TC82594 similar to GP|5262776|emb|CAB45881.1 berberine bridge enzyme-like
protein {Arabidopsis thaliana}, partial (26%)
Length = 698
Score = 25.0 bits (53), Expect = 4.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 18 VDELNYNKDELTKTQTDMLLMLTDEQRCVHDKI 50
VDE+N++K LTK + ++M T +H +
Sbjct: 434 VDEINHDKGCLTKIR*SFIIMATTNNPNLHTNL 336
>TC86562 similar to GP|21553404|gb|AAM62497.1 26S proteasome regulatory
particle chain RPT6-like protein {Arabidopsis thaliana},
partial (77%)
Length = 1564
Score = 25.0 bits (53), Expect = 4.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 64 LYGYGGTGKTFIWKTSLAVVRSKGLIVLN 92
LYG GTGKT + K A+ + G + +N
Sbjct: 526 LYGPPGTGKTMLAK---AIAKESGAVFIN 603
>TC85936 homologue to GP|13537115|dbj|BAB40755. AtSUG1 {Arabidopsis
thaliana}, partial (98%)
Length = 1633
Score = 25.0 bits (53), Expect = 4.6
Identities = 18/65 (27%), Positives = 28/65 (42%), Gaps = 9/65 (13%)
Frame = +1
Query: 47 HDKIMDSKGFDDGGFFFLYGYGGTGKTFIWK-----TSLAVVRSKGLIV----LNAASRV 97
H ++ +S G LYG GTGKT + + T +R G + + SR+
Sbjct: 688 HPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRM 867
Query: 98 YREFY 102
RE +
Sbjct: 868 VRELF 882
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.322 0.140 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,151,221
Number of Sequences: 36976
Number of extensions: 33734
Number of successful extensions: 183
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of query: 109
length of database: 9,014,727
effective HSP length: 85
effective length of query: 24
effective length of database: 5,871,767
effective search space: 140922408
effective search space used: 140922408
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)
Medicago: description of AC140721.12