TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140721.10 + phase: 0 /pseudo
         (329 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC85371 similar to GP|15077144|gb|AAK83083.1 nuclear matrix prot...   252  1e-67
BF004398 similar to GP|21592356|gb nuclear matrix protein 1 {Ara...   216  4e-57
BE318095 similar to GP|21592356|gb| nuclear matrix protein 1 {Ar...    80  8e-16
TC91032 weakly similar to GP|20196995|gb|AAB91977.2 expressed pr...    29  2.2
AW574081                                                               28  4.9
TC85227 similar to GP|15983773|gb|AAL10483.1 AT4g29060/F19B15_90...    28  6.4

>TC85371 similar to GP|15077144|gb|AAK83083.1 nuclear matrix protein 1
           {Lycopersicon esculentum}, partial (66%)
          Length = 738

 Score =  252 bits (644), Expect = 1e-67
 Identities = 151/232 (65%), Positives = 166/232 (71%), Gaps = 13/232 (5%)
 Frame = +3

Query: 1   MASKQMEVIQKKLGMLNYPRANASAQSLLFAGMERYALFEWLFFRLLGDKSPFSQQNLQG 60
           MAS QME IQKKLG+LNYPR+NASAQSLLFAGMERYAL EWLFFRLLGDKSPFSQQNLQG
Sbjct: 81  MASNQMEAIQKKLGILNYPRSNASAQSLLFAGMERYALLEWLFFRLLGDKSPFSQQNLQG 260

Query: 61  DALDRDEETARIQYLAEIAKFLGITTTVDTDAIQTHLLNDDLFFFL*LW*CRYGIGINLV 120
           DALDRDEETARIQYLAE+AKFLGITTTVDTDAIQ H   +D    L            L+
Sbjct: 261 DALDRDEETARIQYLAEMAKFLGITTTVDTDAIQGHGSYEDRTEML-----------RLI 407

Query: 121 CIFVSIVLTSR*PRTYT**ILLQKNRH----------KYFLKNVNCFP---QMFRFSPYI 167
              V   + +  P  ++    + K+ H          + F +    FP   Q+    P +
Sbjct: 408 VDLVEATIYADNPE-WSVDEQVAKDIHLIDSIAEKQAQIFSEECKLFPADVQIQSIYP-L 581

Query: 168 P*VAELESKLTEQSKILLNLQQKVDDLASKHAYNPDEEYTEVESQLRAHLES 219
           P VAELESKLTEQSKILLNLQQKVDDLASKHAYNPDEEYTEVESQLRAHL S
Sbjct: 582 PEVAELESKLTEQSKILLNLQQKVDDLASKHAYNPDEEYTEVESQLRAHLGS 737


>BF004398 similar to GP|21592356|gb nuclear matrix protein 1 {Arabidopsis
           thaliana}, partial (34%)
          Length = 605

 Score =  216 bits (549), Expect(2) = 4e-57
 Identities = 108/109 (99%), Positives = 108/109 (99%)
 Frame = -1

Query: 221 LETARTFNMIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLQNLRDSHAA 280
           LETAR FNMIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLQNLRDSHAA
Sbjct: 575 LETARPFNMIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLQNLRDSHAA 396

Query: 281 LAFGSSETSGGPSSVSRIISECESEMTVINRDLGILSASIAREHGEKMS 329
           LAFGSSETSGGPSSVSRIISECESEMTVINRDLGILSASIAREHGEKMS
Sbjct: 395 LAFGSSETSGGPSSVSRIISECESEMTVINRDLGILSASIAREHGEKMS 249



 Score = 23.5 bits (49), Expect(2) = 4e-57
 Identities = 10/15 (66%), Positives = 12/15 (79%)
 Frame = -3

Query: 212 QLRAHLESFLETART 226
           Q+RAHLESFL  + T
Sbjct: 603 QMRAHLESFLRNS*T 559


>BE318095 similar to GP|21592356|gb| nuclear matrix protein 1 {Arabidopsis
           thaliana}, partial (12%)
          Length = 332

 Score = 80.5 bits (197), Expect = 8e-16
 Identities = 39/41 (95%), Positives = 39/41 (95%)
 Frame = +1

Query: 1   MASKQMEVIQKKLGMLNYPRANASAQSLLFAGMERYALFEW 41
           MASKQME IQKKLGMLNYPRANASAQSLLFAGMERYAL EW
Sbjct: 208 MASKQMEAIQKKLGMLNYPRANASAQSLLFAGMERYALLEW 330


>TC91032 weakly similar to GP|20196995|gb|AAB91977.2 expressed protein
           {Arabidopsis thaliana}, partial (37%)
          Length = 1366

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 40/147 (27%), Positives = 59/147 (39%), Gaps = 7/147 (4%)
 Frame = -1

Query: 184 LLNLQQKVDDLASKH-----AYNPDEEYTEVESQ--LRAHLESFLETARTFNMIYTKEIR 236
           LLNLQ +++ L+SKH       NP    +   S   L A   SF  +A TFN        
Sbjct: 622 LLNLQTQIEFLSSKH*DHSFLNNPYTNGSRSSSSPILNATFNSFNPSAATFNFPLFNSSF 443

Query: 237 PWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLQNLRDSHAALAFGSSETSGGPSSVS 296
             +++   P +    P  N L      L  F+ +  +L  + A    G S+TS       
Sbjct: 442 TLSNLSFNPTITPTNP-NNSLFTFNSSLFPFISSTTSLTSTSA----GRSDTS------L 296

Query: 297 RIISECESEMTVINRDLGILSASIARE 323
           R +S     +TV        +AS+ RE
Sbjct: 295 RTVSRSSETLTVCE------TASLQRE 233


>AW574081 
          Length = 405

 Score = 28.1 bits (61), Expect = 4.9
 Identities = 14/38 (36%), Positives = 23/38 (59%)
 Frame = -3

Query: 290 GGPSSVSRIISECESEMTVINRDLGILSASIAREHGEK 327
           G P  + R++++  +E+ VI      L AS+ R+HGEK
Sbjct: 142 GIPGKIHRLLAQSRAELQVI------L*ASVTRKHGEK 47


>TC85227 similar to GP|15983773|gb|AAL10483.1 AT4g29060/F19B15_90
           {Arabidopsis thaliana}, partial (63%)
          Length = 3731

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 15/43 (34%), Positives = 22/43 (50%)
 Frame = -3

Query: 27  SLLFAGMERYALFEWLFFRLLGDKSPFSQQNLQGDALDRDEET 69
           SL  A +ER A  E +    LGD+SP    + +GD+ +    T
Sbjct: 609 SLFLARLERLAFAEPVLASDLGDESPLVPTSFEGDSPETSSAT 481


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.332    0.143    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,376,078
Number of Sequences: 36976
Number of extensions: 103650
Number of successful extensions: 585
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of query: 329
length of database: 9,014,727
effective HSP length: 96
effective length of query: 233
effective length of database: 5,465,031
effective search space: 1273352223
effective search space used: 1273352223
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 58 (26.9 bits)