TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140720.11 - phase: 0 
         (139 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC88977 weakly similar to GP|10177220|dbj|BAB10295. gene_id:MPF2...    99  4e-22
BI273212 similar to GP|21553451|gb unknown {Arabidopsis thaliana...    95  1e-20
AW692911 weakly similar to PIR|T05244|T05 hypothetical protein F...    31  0.14
TC84218 similar to GP|15529248|gb|AAK97718.1 At1g29190/F28N24_12...    31  0.14
TC90516                                                                27  3.5
TC77753 similar to GP|19773582|gb|AAL98709.1 4-coumarate:coenzym...    26  4.5
TC82784 similar to PIR|S44261|S44261 SRG1 protein - Arabidopsis ...    26  4.5

>TC88977 weakly similar to GP|10177220|dbj|BAB10295.
           gene_id:MPF21.10~unknown protein {Arabidopsis thaliana},
           partial (55%)
          Length = 839

 Score = 99.4 bits (246), Expect = 4e-22
 Identities = 56/132 (42%), Positives = 79/132 (59%), Gaps = 19/132 (14%)
 Frame = +1

Query: 2   GNCQAAELATVVIHRPGNKVERIYWSVSAHEVMNSNPGHYVALVVSSPTLKSE------- 54
           GNCQA + AT+VI +P  K ER+YW V+A EVM ++P HYVAL++S+    S+       
Sbjct: 40  GNCQAIDTATLVIQQPNGKEERLYWPVTASEVMKTHPDHYVALLISTTLCTSKDKENCSN 219

Query: 55  -----------NGMPLKHLKLLRPDDTLLIGQVYRLISFEDVLKEFASKKCGKLGK-LLK 102
                      N + +  +KLL+P DTLL+GQVYRLIS ++V K   +KK  K+ +  L 
Sbjct: 220 KRSDDDDDNNNNKVRITRIKLLKPTDTLLLGQVYRLISAQEVTKGMWAKKQAKMKRNSLP 399

Query: 103 ESGNRGIQMKHR 114
           ES  +  Q+K R
Sbjct: 400 ESAQKSNQIKER 435


>BI273212 similar to GP|21553451|gb unknown {Arabidopsis thaliana}, partial
           (62%)
          Length = 663

 Score = 94.7 bits (234), Expect = 1e-20
 Identities = 46/101 (45%), Positives = 65/101 (63%), Gaps = 5/101 (4%)
 Frame = +1

Query: 1   MGNCQAAELATVVIHRPGNKVERIYWSVSAHEVMNSNPGHYVALVVSSPTLKSENGMPLK 60
           MGNCQA + A +VI  P  K++R+YW V+A EVM +NPGHYV+L++  P    E     K
Sbjct: 46  MGNCQAVDAAVLVIQHPCGKIDRLYWPVTASEVMKTNPGHYVSLIMPLPPQPQEQNQEQK 225

Query: 61  -----HLKLLRPDDTLLIGQVYRLISFEDVLKEFASKKCGK 96
                 +KLLRP++TL +G  YRLI+ ++V+K   +KK  K
Sbjct: 226 TVRFTRVKLLRPNETLNLGHAYRLITNQEVMKVLKAKKHAK 348


>AW692911 weakly similar to PIR|T05244|T05 hypothetical protein F18A5.140 -
           Arabidopsis thaliana, partial (1%)
          Length = 464

 Score = 31.2 bits (69), Expect = 0.14
 Identities = 14/30 (46%), Positives = 22/30 (72%)
 Frame = +2

Query: 79  LISFEDVLKEFASKKCGKLGKLLKESGNRG 108
           LIS E ++K++ S +  +LG LL +SGN+G
Sbjct: 323 LISAESIVKDWESPEIVQLGSLLSKSGNQG 412


>TC84218 similar to GP|15529248|gb|AAK97718.1 At1g29190/F28N24_12
           {Arabidopsis thaliana}, partial (57%)
          Length = 656

 Score = 31.2 bits (69), Expect = 0.14
 Identities = 22/68 (32%), Positives = 39/68 (57%)
 Frame = +2

Query: 13  VIHRPGNKVERIYWSVSAHEVMNSNPGHYVALVVSSPTLKSENGMPLKHLKLLRPDDTLL 72
           ++H  G +VE I  S+ A E+M + P H V    SSP+  +++G  +  + ++ PD  L 
Sbjct: 122 IVHCNG-RVEEISGSIKASEIMKTYPKH-VLKKPSSPS--TQDGGVVPKIVVVPPDADLQ 289

Query: 73  IGQVYRLI 80
            G++Y L+
Sbjct: 290 RGKIYFLM 313


>TC90516 
          Length = 983

 Score = 26.6 bits (57), Expect = 3.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 58  PLKHLKLLRPDDTLLIGQVYRLISF 82
           PL+HL++L   ++L IGQ   LIS+
Sbjct: 777 PLEHLRVLDRQNSLQIGQTLVLISY 851


>TC77753 similar to GP|19773582|gb|AAL98709.1 4-coumarate:coenzyme A ligase
           {Glycine max}, partial (94%)
          Length = 2034

 Score = 26.2 bits (56), Expect = 4.5
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 37  NPGHYVALVVSSPTLKSENGMPLKHLKLLRPDDTLLIGQ-VYRLISFEDVL 86
           NP   VAL  SS T     G+ L H  L+     L+ G+  ++  ++EDVL
Sbjct: 609 NPNDVVALPFSSGTSGLPKGVMLTHENLVTTISQLVDGENPHQYTNYEDVL 761


>TC82784 similar to PIR|S44261|S44261 SRG1 protein - Arabidopsis thaliana,
           partial (59%)
          Length = 1206

 Score = 26.2 bits (56), Expect = 4.5
 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
 Frame = +3

Query: 60  KHLKL--LRPDDTLLIGQVYRLISFEDVLKEFASKKCGKLGKLLK-------ESGNRGIQ 110
           KHL++  L P   L +     L S E  +K  A    G + K LK       E    GIQ
Sbjct: 426 KHLRMPHLFPQLPLPLRDTLELYSQE--IKNLAMVILGHIEKSLKMEEMEIRELFEDGIQ 599

Query: 111 MKHRDFRAPNPSPVKVI 127
           M   ++  P P P KVI
Sbjct: 600 MMRTNYYPPCPQPEKVI 650


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.318    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,196,803
Number of Sequences: 36976
Number of extensions: 50879
Number of successful extensions: 227
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of query: 139
length of database: 9,014,727
effective HSP length: 86
effective length of query: 53
effective length of database: 5,834,791
effective search space: 309243923
effective search space used: 309243923
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)