TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140670.5 + phase: 0 /pseudo/partial
         (181 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC78131 similar to GP|6091722|gb|AAF03434.1| putative ribosomal ...   291  1e-79
TC86543 similar to GP|4836870|gb|AAD30573.1| 50S Ribosomal prote...    69  8e-13
BQ751169 similar to GP|15021559|gb ORF167 {shrimp white spot syn...    29  0.89
TC80239 similar to GP|7208779|emb|CAB76912.1 hypothetical protei...    28  2.0
BQ144398 similar to GP|13122418|dbj putative glycin-rich protein...    27  3.4
TC76744 similar to SP|Q9FKC0|R1AD_ARATH 60S ribosomal protein L1...    27  4.4
TC87535 similar to GP|19310542|gb|AAL85004.1 unknown protein {Ar...    27  4.4
TC85336 similar to PIR|E86154|E86154 hypothetical protein AAG008...    27  5.8
CA860325 weakly similar to GP|12654479|gb| Unknown (protein for ...    27  5.8
TC86327 similar to GP|14335106|gb|AAK59832.1 At2g41900/T6D20.20 ...    27  5.8
BG453843 similar to GP|19423912|gb putative 60S ribosomal protei...    26  7.6
TC86010 homologue to PIR|T00795|T00795 26S proteasome regulatory...    26  7.6
TC77864 weakly similar to PIR|T06329|T06329 symbiotic ammonium t...    26  9.9

>TC78131 similar to GP|6091722|gb|AAF03434.1| putative ribosomal protein L13
           {Arabidopsis thaliana}, partial (87%)
          Length = 953

 Score =  291 bits (744), Expect = 1e-79
 Identities = 156/191 (81%), Positives = 162/191 (84%), Gaps = 10/191 (5%)
 Frame = +2

Query: 1   RAAAGIKRIKLDGLRWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNA 60
           RAAAGIKRIKLDGLRWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNA
Sbjct: 134 RAAAGIKRIKLDGLRWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNA 313

Query: 61  KDIAVTGRKLTDKVYYWHTGKEL*RIRWPKTLQMLFAKLFCA*FQKTTYVM--------- 111
           KDIAVTGRKLTDKVYYWHTG  +  ++  +TL+   AK      +K    M         
Sbjct: 314 KDIAVTGRKLTDKVYYWHTG-YVGHLK-QRTLKDQMAKDPTDVIRKAILRMIPKNNLRDD 487

Query: 112 -DRKLRIFPGSEHPFGDRPLEPYVMPPRTVREMRPRARRAMIRAQKKAEQQQENAEQRQN 170
            DRKLRIFPGSEHPFGDRPLEPYVMPPRTVREMRPRARRAMIRAQKKAEQQQENAEQRQN
Sbjct: 488 RDRKLRIFPGSEHPFGDRPLEPYVMPPRTVREMRPRARRAMIRAQKKAEQQQENAEQRQN 667

Query: 171 AEEMKNSKKSE 181
           AEEMKNSKKSE
Sbjct: 668 AEEMKNSKKSE 700


>TC86543 similar to GP|4836870|gb|AAD30573.1| 50S Ribosomal protein L13
           {Arabidopsis thaliana}, partial (65%)
          Length = 1058

 Score = 69.3 bits (168), Expect = 8e-13
 Identities = 33/66 (50%), Positives = 46/66 (69%)
 Frame = +1

Query: 16  WRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVY 75
           W + DA  +ILGRLAS IA  + GK+  TYTP+ D G   IV+NA+ +AV+G+K T K+Y
Sbjct: 394 WYIVDATDKILGRLASTIANHIRGKNLVTYTPSVDMGSFVIVINAEKVAVSGKKRTQKLY 573

Query: 76  YWHTGK 81
             H+G+
Sbjct: 574 RRHSGR 591


>BQ751169 similar to GP|15021559|gb ORF167 {shrimp white spot syndrome
           virus}, partial (0%)
          Length = 682

 Score = 29.3 bits (64), Expect = 0.89
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -2

Query: 123 HPFGDRPLEPYVMPPRTVREMRPRARRAMIR 153
           HP  D P  P  +PP   R  RPR RRA  R
Sbjct: 504 HPSDDAPTAP--LPPLPPRHHRPRCRRAPFR 418


>TC80239 similar to GP|7208779|emb|CAB76912.1 hypothetical protein {Cicer
           arietinum}, partial (43%)
          Length = 930

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 138 RTVREMRPRARRAMIRAQKKAEQQQENAEQRQNAEEMKNSKKSE 181
           R  R      +RA+ +AQK+AEQ+++  E+R   +  + +  +E
Sbjct: 201 RKKRNAEKAQQRALYKAQKEAEQKEKEREKRAKKKGKRKTVTTE 332


>BQ144398 similar to GP|13122418|dbj putative glycin-rich protein {Oryza
           sativa (japonica cultivar-group)}, partial (10%)
          Length = 1322

 Score = 27.3 bits (59), Expect = 3.4
 Identities = 15/42 (35%), Positives = 22/42 (51%)
 Frame = +3

Query: 139 TVREMRPRARRAMIRAQKKAEQQQENAEQRQNAEEMKNSKKS 180
           + R  +PR  +   R +KK E   +    ++NA   KNSKKS
Sbjct: 468 SARRKKPRNEKKSPRREKKTEATPQ*P*IKRNANGGKNSKKS 593


>TC76744 similar to SP|Q9FKC0|R1AD_ARATH 60S ribosomal protein L13a-4.
           [Mouse-ear cress] {Arabidopsis thaliana}, complete
          Length = 911

 Score = 26.9 bits (58), Expect = 4.4
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +3

Query: 18  VFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVYY 76
           V DA+  +LGRLAS +A  ++            +G   +V+  ++I ++G  +  K+ Y
Sbjct: 90  VIDARHHMLGRLASIVAKELL------------NGQKVVVVRCEEICMSGGLVRQKMKY 230


>TC87535 similar to GP|19310542|gb|AAL85004.1 unknown protein {Arabidopsis
           thaliana}, partial (86%)
          Length = 893

 Score = 26.9 bits (58), Expect = 4.4
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 138 RTVREMRPRARRAMIRAQKKAEQQQENAEQRQNAEEMKNSKKSE 181
           RT  + R     +  + Q K E++++  ++++   + KNSKKS+
Sbjct: 13  RTKEKKRKENTSSSFQKQSKREKERQK*KKKETKNKEKNSKKSK 144


>TC85336 similar to PIR|E86154|E86154 hypothetical protein AAG00893.1
           [imported] - Arabidopsis thaliana, partial (82%)
          Length = 1296

 Score = 26.6 bits (57), Expect = 5.8
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 89  PKTLQMLFAKLFCA*FQKTTYVMDRKLRIFPGSEH 123
           PKT  + +  +FC  F    Y  D K R  PG EH
Sbjct: 811 PKTKPVKYISIFCDFFSVDAYA*DEKCR-KPGMEH 710


>CA860325 weakly similar to GP|12654479|gb| Unknown (protein for
           IMAGE:2961467) {Homo sapiens}, partial (10%)
          Length = 413

 Score = 26.6 bits (57), Expect = 5.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 138 RTVREMRPRARRAMIRAQKKAEQQQENAEQRQN 170
           R VRE+  + R    +A+KKAE+++   E R+N
Sbjct: 215 RKVREIAEKQRLEEEKARKKAEERRLYLENREN 313


>TC86327 similar to GP|14335106|gb|AAK59832.1 At2g41900/T6D20.20 {Arabidopsis
            thaliana}, partial (50%)
          Length = 3018

 Score = 26.6 bits (57), Expect = 5.8
 Identities = 12/43 (27%), Positives = 24/43 (54%)
 Frame = +2

Query: 132  PYVMPPRTVREMRPRARRAMIRAQKKAEQQQENAEQRQNAEEM 174
            P  M PR++  + P + R    AQ++ +QQQ+   +  ++ E+
Sbjct: 1976 PGRMSPRSMEALSPMSSRLSAFAQREKQQQQQQQLRSLSSREL 2104


>BG453843 similar to GP|19423912|gb putative 60S ribosomal protein
          {Arabidopsis thaliana}, partial (84%)
          Length = 608

 Score = 26.2 bits (56), Expect = 7.6
 Identities = 14/59 (23%), Positives = 28/59 (46%)
 Frame = +1

Query: 18 VFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVYY 76
          V DA+G +LGRLAS  A  ++             G   +++  +++ ++G  +  +  Y
Sbjct: 46 VIDAQGHMLGRLASIAAKQLL------------TGQQLVIVRCEEVCISGGLVRQRAKY 186


>TC86010 homologue to PIR|T00795|T00795 26S proteasome regulatory subunit
           [imported] - Arabidopsis thaliana, partial (35%)
          Length = 1865

 Score = 26.2 bits (56), Expect = 7.6
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +2

Query: 131 EPYVMPPRTVREMRPRA-----RRAMIRAQKKAEQQQENAE 166
           +P  +P  T     P A      +A  RA KKAE+Q+ NAE
Sbjct: 707 KPTTVPTTTSTVKLPTAVLSTSAKAKARASKKAEEQKANAE 829


>TC77864 weakly similar to PIR|T06329|T06329 symbiotic ammonium transport
           protein SAT1 - soybean, partial (21%)
          Length = 1411

 Score = 25.8 bits (55), Expect = 9.9
 Identities = 14/57 (24%), Positives = 24/57 (41%)
 Frame = +3

Query: 125 FGDRPLEPYVMPPRTVREMRPRARRAMIRAQKKAEQQQENAEQRQNAEEMKNSKKSE 181
           FG+  +EP + P     + R    R +  A KK  +  E  +    AE  +  + +E
Sbjct: 432 FGNSSIEPIIEPMSHKTKRRTDESRGVKEATKKVRRSCETVQDHLMAERKRRRELTE 602


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.327    0.140    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,612,369
Number of Sequences: 36976
Number of extensions: 52982
Number of successful extensions: 276
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of query: 181
length of database: 9,014,727
effective HSP length: 90
effective length of query: 91
effective length of database: 5,686,887
effective search space: 517506717
effective search space used: 517506717
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)