BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140670.16 + phase: 0
(235 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI308304 similar to GP|18642468|em transcriptional adaptor {Zea ... 397 e-111
TC91278 similar to GP|18642468|emb|CAD22882. transcriptional ada... 190 5e-49
TC77331 similar to GP|10177075|dbj|BAB10517. gene_id:MKP11.15~un... 37 0.005
BF644787 similar to GP|11994692|db MYB-like DNA-binding domain p... 35 0.033
TC79114 similar to GP|10177075|dbj|BAB10517. gene_id:MKP11.15~un... 33 0.095
TC90300 weakly similar to PIR|T52301|T52301 GYMNOS/PICKLE protei... 33 0.095
BQ147314 homologue to PIR|C96664|C96 hypothetical protein T12P18... 33 0.12
TC79672 similar to GP|6979341|gb|AAF34434.1| myb-like protein {O... 32 0.16
TC86578 similar to PIR|C85440|C85440 myb-related protein [import... 32 0.16
TC79002 similar to GP|15375305|gb|AAK54745.2 putative transcript... 32 0.21
TC87926 weakly similar to PIR|F86184|F86184 hypothetical protein... 32 0.28
TC84123 similar to PIR|T47712|T47712 MYB transcription factor-li... 31 0.47
TC81527 similar to GP|9954116|gb|AAG08961.1| tuber-specific and ... 31 0.47
BF645233 similar to PIR|T03762|T03 myb-related transcription fac... 30 0.61
TC91709 homologue to GP|21213868|emb|CAD12767. LHY protein {Phas... 30 0.61
AW685381 similar to GP|14334582|gb putative MYB family transcrip... 30 0.80
TC77333 similar to GP|10177075|dbj|BAB10517. gene_id:MKP11.15~un... 30 1.0
TC84780 homologue to PIR|F85021|F85021 probable transcription fa... 29 1.4
TC87247 similar to GP|9714501|emb|CAC01441.1 putative fatty acid... 29 1.8
TC84274 similar to PIR|H86283|H86283 protein T15D22.8 [imported]... 29 1.8
>BI308304 similar to GP|18642468|em transcriptional adaptor {Zea mays},
partial (24%)
Length = 781
Score = 397 bits (1019), Expect = e-111
Identities = 188/188 (100%), Positives = 188/188 (100%)
Frame = +2
Query: 1 MGRCCRAASRSSPIAADDNRSKRKKVALNADNLETSSAAGMGITTDGKVSLYHCNYCNKD 60
MGRCCRAASRSSPIAADDNRSKRKKVALNADNLETSSAAGMGITTDGKVSLYHCNYCNKD
Sbjct: 203 MGRCCRAASRSSPIAADDNRSKRKKVALNADNLETSSAAGMGITTDGKVSLYHCNYCNKD 382
Query: 61 ISGKIRIKCAVCQDFDLCIECFSVGVELTPHKSNHPYRVMDNLSFPLICPDWSAEEEMLL 120
ISGKIRIKCAVCQDFDLCIECFSVGVELTPHKSNHPYRVMDNLSFPLICPDWSAEEEMLL
Sbjct: 383 ISGKIRIKCAVCQDFDLCIECFSVGVELTPHKSNHPYRVMDNLSFPLICPDWSAEEEMLL 562
Query: 121 LEALDMYGFGNWNDVADNIGTKSKSQCIDHYNTVYVNSPCFPVPDLSHFSGKNKEELLAM 180
LEALDMYGFGNWNDVADNIGTKSKSQCIDHYNTVYVNSPCFPVPDLSHFSGKNKEELLAM
Sbjct: 563 LEALDMYGFGNWNDVADNIGTKSKSQCIDHYNTVYVNSPCFPVPDLSHFSGKNKEELLAM 742
Query: 181 AKGNQVKK 188
AKGNQVKK
Sbjct: 743 AKGNQVKK 766
>TC91278 similar to GP|18642468|emb|CAD22882. transcriptional adaptor {Zea
mays}, partial (19%)
Length = 686
Score = 190 bits (482), Expect = 5e-49
Identities = 87/131 (66%), Positives = 105/131 (79%)
Frame = +1
Query: 20 RSKRKKVALNADNLETSSAAGMGITTDGKVSLYHCNYCNKDISGKIRIKCAVCQDFDLCI 79
RS+RKK A + DN E S AG G + K +LYHCNYCNKDI+GKIRIKCA C DFDLCI
Sbjct: 265 RSRRKKNAASGDNSE-SGVAGQG-AGEAKRALYHCNYCNKDITGKIRIKCAKCPDFDLCI 438
Query: 80 ECFSVGVELTPHKSNHPYRVMDNLSFPLICPDWSAEEEMLLLEALDMYGFGNWNDVADNI 139
ECFSVG E+TPHKSNH YRVMDNL+F ICP W A++E+LLLE ++MYG GNW +VA+++
Sbjct: 439 ECFSVGAEVTPHKSNHNYRVMDNLNFHFICPGWHADDEILLLEGIEMYGMGNWAEVAEHV 618
Query: 140 GTKSKSQCIDH 150
GTK+K CI+H
Sbjct: 619 GTKNKEACIEH 651
>TC77331 similar to GP|10177075|dbj|BAB10517. gene_id:MKP11.15~unknown
protein {Arabidopsis thaliana}, partial (25%)
Length = 1835
Score = 37.4 bits (85), Expect = 0.005
Identities = 24/68 (35%), Positives = 32/68 (46%)
Frame = +1
Query: 83 SVGVELTPHKSNHPYRVMDNLSFPLICPDWSAEEEMLLLEALDMYGFGNWNDVADNIGTK 142
SVG L P K PY + W+ EE LEAL +YG G W + ++IG+K
Sbjct: 304 SVGNNLAP-KVRKPYTITKQRE------KWTDEEHQKFLEALKLYGRG-WRQIEEHIGSK 459
Query: 143 SKSQCIDH 150
+ Q H
Sbjct: 460 TAIQIRSH 483
>BF644787 similar to GP|11994692|db MYB-like DNA-binding domain protein
{Arabidopsis thaliana}, partial (53%)
Length = 682
Score = 34.7 bits (78), Expect = 0.033
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTK 142
W+AEE+ LL++ + ++G G WN VA G K
Sbjct: 243 WTAEEDRLLIDYVRLHGEGRWNSVARLTGLK 335
>TC79114 similar to GP|10177075|dbj|BAB10517. gene_id:MKP11.15~unknown
protein {Arabidopsis thaliana}, partial (32%)
Length = 759
Score = 33.1 bits (74), Expect = 0.095
Identities = 15/39 (38%), Positives = 22/39 (55%)
Frame = +1
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCIDH 150
W+ EE LEAL +YG W + +++GTK+ Q H
Sbjct: 286 WTDEEHKKFLEALKLYGRA-WRKIEEHVGTKTAVQIRSH 399
>TC90300 weakly similar to PIR|T52301|T52301 GYMNOS/PICKLE protein
[imported] - Arabidopsis thaliana, partial (9%)
Length = 1376
Score = 33.1 bits (74), Expect = 0.095
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCIDHYNTVYVNSP 159
W E + +LL A+ +G+G W + D+ K + N +N P
Sbjct: 223 WKEEHDFMLLRAVLKHGYGRWQAIVDDRDLKIQEIICQELNLPVINGP 366
>BQ147314 homologue to PIR|C96664|C96 hypothetical protein T12P18.7
[imported] - Arabidopsis thaliana, partial (30%)
Length = 595
Score = 32.7 bits (73), Expect = 0.12
Identities = 20/68 (29%), Positives = 32/68 (46%)
Frame = +3
Query: 73 QDFDLCIECFSVGVELTPHKSNHPYRVMDNLSFPLICPDWSAEEEMLLLEALDMYGFGNW 132
Q+ D+ IE S+G H + +V L WS EE+ L+ + +G+G W
Sbjct: 66 QEGDIAIESISMG----QHSCCNQQKVKRGL--------WSPEEDEKLITYITTHGYGCW 209
Query: 133 NDVADNIG 140
++V D G
Sbjct: 210 SEVPDKAG 233
>TC79672 similar to GP|6979341|gb|AAF34434.1| myb-like protein {Oryza
sativa}, partial (46%)
Length = 1391
Score = 32.3 bits (72), Expect = 0.16
Identities = 16/58 (27%), Positives = 25/58 (42%)
Frame = +2
Query: 90 PHKSNHPYRVMDNLSFPLICPDWSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQC 147
PH + D S P W E+ L + ++ YG NWN +A+ + +S C
Sbjct: 134 PHMDDSSSAAEDTKSCPR--GHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSC 301
>TC86578 similar to PIR|C85440|C85440 myb-related protein [imported] -
Arabidopsis thaliana, partial (42%)
Length = 1283
Score = 32.3 bits (72), Expect = 0.16
Identities = 19/63 (30%), Positives = 29/63 (45%), Gaps = 1/63 (1%)
Frame = +2
Query: 86 VELTPHKSNHPYRV-MDNLSFPLICPDWSAEEEMLLLEALDMYGFGNWNDVADNIGTKSK 144
+ H +N P MD + P WS EE+ L + +D YG NW+ ++ I +S
Sbjct: 11 IHFISHNTNAPSSTKMDRIKGP-----WSPEEDESLTKLVDRYGPRNWSLISRAIPGRSG 175
Query: 145 SQC 147
C
Sbjct: 176 KSC 184
>TC79002 similar to GP|15375305|gb|AAK54745.2 putative transcription factor
MYB124 {Arabidopsis thaliana}, partial (54%)
Length = 2304
Score = 32.0 bits (71), Expect = 0.21
Identities = 15/47 (31%), Positives = 26/47 (54%)
Frame = +3
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCIDHYNTVYVNS 158
W+ EE+ +L + + ++G NW +A K+ QC + T Y+NS
Sbjct: 603 WTQEEDDILRDQIGIHGTENWAIIASKFKDKTTRQCRRRWYT-YLNS 740
Score = 30.8 bits (68), Expect = 0.47
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +3
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCIDHYNTV 154
WS EE+MLL EA ++G W ++A + ++ + + ++T+
Sbjct: 759 WSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTL 884
>TC87926 weakly similar to PIR|F86184|F86184 hypothetical protein [imported]
- Arabidopsis thaliana, partial (71%)
Length = 931
Score = 31.6 bits (70), Expect = 0.28
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 52 YHCNYCNKDISGKIRIKCAVCQDFDLCIECFSVGVELTP 90
YHC+ + SG + +C+ F C + F V +++ P
Sbjct: 553 YHCSTTKYNCSGNSKSLSKICKPFRCCFQLFRVNIDVIP 437
>TC84123 similar to PIR|T47712|T47712 MYB transcription factor-like protein
- Arabidopsis thaliana, partial (27%)
Length = 682
Score = 30.8 bits (68), Expect = 0.47
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQC 147
WS EE+ +L + +G NW+ +A I +S C
Sbjct: 214 WSPEEDAILSRLVSQFGARNWSLIARGIAGRSGKSC 321
>TC81527 similar to GP|9954116|gb|AAG08961.1| tuber-specific and
sucrose-responsive element binding factor {Solanum
tuberosum}, partial (56%)
Length = 765
Score = 30.8 bits (68), Expect = 0.47
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQC 147
WSAEE+ +L ++ +G NW+ ++ I +S C
Sbjct: 164 WSAEEDRILTRLVEQHGARNWSLISRYIKGRSGKSC 271
>BF645233 similar to PIR|T03762|T03 myb-related transcription factor - rice,
partial (20%)
Length = 643
Score = 30.4 bits (67), Expect = 0.61
Identities = 11/24 (45%), Positives = 16/24 (65%)
Frame = +1
Query: 112 WSAEEEMLLLEALDMYGFGNWNDV 135
W+A E+ +L+ + YG GNWN V
Sbjct: 310 WTAAEDEILVAHVQKYGEGNWNSV 381
>TC91709 homologue to GP|21213868|emb|CAD12767. LHY protein {Phaseolus
vulgaris}, partial (8%)
Length = 649
Score = 30.4 bits (67), Expect = 0.61
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQ 146
W+ +E LEAL +YG W + ++IGTK+ Q
Sbjct: 547 WTEDEHNRFLEALKLYGRA-WQRIEEHIGTKTAVQ 648
>AW685381 similar to GP|14334582|gb putative MYB family transcription factor
{Arabidopsis thaliana}, partial (30%)
Length = 631
Score = 30.0 bits (66), Expect = 0.80
Identities = 12/43 (27%), Positives = 23/43 (52%)
Frame = +1
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCIDHYNTV 154
W+AEE+ L A+ + +W +A+ +S+ QC+ + V
Sbjct: 307 WTAEEDETLRNAVAAFKGKHWKKIAEFFADRSEVQCLHRWQKV 435
>TC77333 similar to GP|10177075|dbj|BAB10517. gene_id:MKP11.15~unknown
protein {Arabidopsis thaliana}, partial (19%)
Length = 1058
Score = 29.6 bits (65), Expect = 1.0
Identities = 21/59 (35%), Positives = 25/59 (41%)
Frame = +1
Query: 83 SVGVELTPHKSNHPYRVMDNLSFPLICPDWSAEEEMLLLEALDMYGFGNWNDVADNIGT 141
SVG L P K PY + W+ EE LEAL +YG G W + GT
Sbjct: 355 SVGNNLAP-KVRKPYTITKQRE------KWTDEEHQKFLEALKLYGRG-WRQIEGCAGT 507
>TC84780 homologue to PIR|F85021|F85021 probable transcription factor
[imported] - Arabidopsis thaliana, partial (39%)
Length = 971
Score = 29.3 bits (64), Expect = 1.4
Identities = 20/67 (29%), Positives = 30/67 (43%)
Frame = +1
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCIDHYNTVYVNSPCFPVPDLSHFSG 171
WS EE+ LL + YG G W+ V G + +C ++N + PDL +
Sbjct: 151 WSPEEDEKLLNHITKYGHGCWSSVPKQAGLQ---RCGKSCRLRWIN---YLRPDLKRGTF 312
Query: 172 KNKEELL 178
+EE L
Sbjct: 313 SQEEENL 333
>TC87247 similar to GP|9714501|emb|CAC01441.1 putative fatty acid elongase
{Zea mays}, partial (91%)
Length = 2102
Score = 28.9 bits (63), Expect = 1.8
Identities = 13/47 (27%), Positives = 27/47 (56%)
Frame = +3
Query: 185 QVKKGLLLNDLNYSLCRFCMLELVTLFYSMNLKTCYVTEWLCSEGKE 231
Q+ + L N ++ +LC M+ LVTL++ + Y+ ++ C + K+
Sbjct: 378 QLYENLKFNLVSVTLCTSLMVFLVTLYFMSRPRGVYLVDFACYKPKQ 518
>TC84274 similar to PIR|H86283|H86283 protein T15D22.8 [imported] -
Arabidopsis thaliana, partial (14%)
Length = 748
Score = 28.9 bits (63), Expect = 1.8
Identities = 11/51 (21%), Positives = 25/51 (48%)
Frame = -3
Query: 100 MDNLSFPLICPDWSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCIDH 150
+ N FP+ P ++ +L+ + +WN + +I + KS C+++
Sbjct: 422 IQNTIFPIFFPCQFSDNLYFILQLRSSFVLSSWNTIKFSIDRRIKSSCVEN 270
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.135 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,606,723
Number of Sequences: 36976
Number of extensions: 150642
Number of successful extensions: 877
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of query: 235
length of database: 9,014,727
effective HSP length: 93
effective length of query: 142
effective length of database: 5,575,959
effective search space: 791786178
effective search space used: 791786178
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Medicago: description of AC140670.16