BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140549.10 - phase: 0
(184 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86827 homologue to GP|303748|dbj|BAA02115.1| GTP-binding prote... 332 4e-92
TC77446 homologue to GP|303750|dbj|BAA02116.1| GTP-binding prote... 249 6e-67
TC79203 homologue to PIR|S41430|S41430 GTP-binding protein ras-... 246 5e-66
TC77453 homologue to GP|303732|dbj|BAA02117.1| GTP-binding prote... 240 2e-64
AL375501 homologue to GP|303748|dbj| GTP-binding protein {Pisum ... 212 6e-56
BQ148040 homologue to GP|303748|dbj| GTP-binding protein {Pisum ... 145 2e-54
TC77240 homologue to GP|1370196|emb|CAA98175.1 RAB8D {Lotus japo... 168 1e-42
TC77618 homologue to PIR|S57478|S57478 GTP-binding protein GTP13... 165 1e-41
TC85957 homologue to PIR|S57471|S57471 GTP-binding protein GTP6 ... 164 2e-41
TC85959 homologue to PIR|S57471|S57471 GTP-binding protein GTP6 ... 159 6e-40
TC77239 homologue to GP|1370196|emb|CAA98175.1 RAB8D {Lotus japo... 150 2e-37
TC77335 homologue to GP|1370176|emb|CAA98165.1 RAB2A {Lotus japo... 133 5e-32
TC80761 homologue to GP|1370174|emb|CAA98164.1 RAB1Y {Lotus japo... 127 2e-30
AL385573 homologue to GP|11558647|em secretion related GTPase (... 124 2e-29
TC86724 homologue to PIR|T06445|T06445 GTP-binding protein - gar... 124 3e-29
BG585169 similar to GP|1370152|emb RAB11F {Lotus japonicus}, par... 123 4e-29
TC82103 similar to GP|1370144|emb|CAA98178.1 RAB11B {Lotus japon... 122 1e-28
TC87022 homologue to SP|O04486|RB1C_ARATH Ras-related protein Ra... 121 1e-28
TC86480 homologue to SP|Q40193|R11C_LOTJA Ras-related protein Ra... 120 3e-28
TC87342 PIR|S41431|S41431 GTP-binding protein ras-like - fava b... 120 4e-28
>TC86827 homologue to GP|303748|dbj|BAA02115.1| GTP-binding protein {Pisum
sativum}, complete
Length = 917
Score = 332 bits (852), Expect = 4e-92
Identities = 172/197 (87%), Positives = 174/197 (88%), Gaps = 18/197 (9%)
Frame = +2
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF K ++
Sbjct: 140 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFKIRTVELEGKTAKLQIWDTA 319
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL
Sbjct: 320 GQERFRTITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 499
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE
Sbjct: 500 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 679
Query: 168 SVQMKGQPIQQNTNCCG 184
SVQMKGQPIQQNTNCCG
Sbjct: 680 SVQMKGQPIQQNTNCCG 730
>TC77446 homologue to GP|303750|dbj|BAA02116.1| GTP-binding protein {Pisum
sativum}, complete
Length = 1080
Score = 249 bits (635), Expect = 6e-67
Identities = 130/196 (66%), Positives = 152/196 (77%), Gaps = 18/196 (9%)
Frame = +3
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADDSY D+YISTIGVDF K ++
Sbjct: 132 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 311
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGII+VYDVTD ESFNNVKQWL+EIDRYA+ +V+KLLVGNK DL
Sbjct: 312 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDL 491
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
+D K+V + TAKAFADE+GIPF+ETSAK++ NVEQAF+ MAAEIKN+M SQP S A
Sbjct: 492 SDKKVVSSETAKAFADEIGIPFMETSAKNASNVEQAFMAMAAEIKNRMASQPANSARPA- 668
Query: 168 SVQMKGQPIQQNTNCC 183
+VQ++GQP+ Q CC
Sbjct: 669 TVQIRGQPVNQKAGCC 716
>TC79203 homologue to PIR|S41430|S41430 GTP-binding protein ras-like (clone
vfa-ypt1) - fava bean, complete
Length = 920
Score = 246 bits (627), Expect = 5e-66
Identities = 129/196 (65%), Positives = 150/196 (75%), Gaps = 18/196 (9%)
Frame = +1
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADDSY D+YISTIGVDF K ++
Sbjct: 223 DYLFKLLLIGDSGVGKSCLLLRFADDSYIDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 402
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVTD ESFNNVKQWL EIDRYA+ +V+KLLVGNKCDL
Sbjct: 403 GQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDL 582
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T + V TAKAFADE+GIPF+ETSAKDS NVEQAF+ MA+ IK++M SQPT + +
Sbjct: 583 TSERAVSYDTAKAFADEIGIPFMETSAKDSTNVEQAFMAMASSIKDRMASQPT-NNARPP 759
Query: 168 SVQMKGQPIQQNTNCC 183
+VQ++GQP+ Q + CC
Sbjct: 760 TVQIRGQPVGQKSGCC 807
>TC77453 homologue to GP|303732|dbj|BAA02117.1| GTP-binding protein {Pisum
sativum}, complete
Length = 944
Score = 240 bits (613), Expect = 2e-64
Identities = 125/196 (63%), Positives = 148/196 (74%), Gaps = 18/196 (9%)
Frame = +1
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADDSY D+YISTIGVDF K ++
Sbjct: 139 DYLFKLLLIGDSGVGKSCLLLRFADDSYIDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 318
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVTD ESFNNVKQWL EIDRYA+ +V+KLLVGNK DL
Sbjct: 319 GQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDL 498
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T N+ V TAK FAD++GIPF+ETSAKD+ NVE AF+ MAA IK++M SQP+ + +
Sbjct: 499 TANRAVSYDTAKEFADQIGIPFMETSAKDATNVEGAFMAMAAAIKDRMASQPSANNARPP 678
Query: 168 SVQMKGQPIQQNTNCC 183
+VQ++GQP+ Q + CC
Sbjct: 679 TVQIRGQPVGQKSGCC 726
>AL375501 homologue to GP|303748|dbj| GTP-binding protein {Pisum sativum},
partial (66%)
Length = 492
Score = 212 bits (540), Expect = 6e-56
Identities = 115/151 (76%), Positives = 118/151 (77%)
Frame = +3
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFAKPPSCRLTITSSYYRGAHG 65
DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF I + G
Sbjct: 105 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFK--------IRTVELEGKTA 260
Query: 66 IIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDLTDNKLVHTHTAKAFADEL 125
+ + WLHEIDRYANHSVSKLLVGNKCDLTDNKLVHTHTAKAFADEL
Sbjct: 261 KLQI--------------WLHEIDRYANHSVSKLLVGNKCDLTDNKLVHTHTAKAFADEL 398
Query: 126 GIPFLETSAKDSINVEQAFLTMAAEIKNKMG 156
GIPFLETSAKDSINVEQAFLTMAAEIKNKMG
Sbjct: 399 GIPFLETSAKDSINVEQAFLTMAAEIKNKMG 491
>BQ148040 homologue to GP|303748|dbj| GTP-binding protein {Pisum sativum},
partial (69%)
Length = 673
Score = 145 bits (367), Expect(2) = 2e-54
Identities = 77/110 (70%), Positives = 77/110 (70%), Gaps = 33/110 (30%)
Frame = +1
Query: 46 AKPPSCRL---------------------------------TITSSYYRGAHGIIIVYDV 72
AKPPSCRL TITSSYYRGAHGIIIVYDV
Sbjct: 343 AKPPSCRLLVLFSHYFFNHNHK*LLNYYFV*WDTAGQERFRTITSSYYRGAHGIIIVYDV 522
Query: 73 TDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDLTDNKLVHTHTAKAFA 122
TDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDLTDNKLVHTHTAKAFA
Sbjct: 523 TDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDLTDNKLVHTHTAKAFA 672
Score = 83.6 bits (205), Expect(2) = 2e-54
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +2
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF 45
DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF
Sbjct: 116 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF 235
>TC77240 homologue to GP|1370196|emb|CAA98175.1 RAB8D {Lotus japonicus},
complete
Length = 1148
Score = 168 bits (425), Expect = 1e-42
Identities = 93/204 (45%), Positives = 132/204 (64%), Gaps = 25/204 (12%)
Frame = +1
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFAKPPSCRL------------ 53
DYL KLL+IGDS VGKSCLLLRF+D S+ ++I+TIG+DF K + L
Sbjct: 259 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF-KIRTIELDGKRIKLQIWDT 435
Query: 54 -------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCD 106
TIT++YYRGA GI++VYDVTD SFNN++ W+ I+++A+ +V+K+LVGNK D
Sbjct: 436 AGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKAD 615
Query: 107 LTDNK-LVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMG-----SQPT 160
+ ++K V T +A ADE GI F ETSAK ++NVE+ F ++A +IK ++ ++PT
Sbjct: 616 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDNKAEPT 795
Query: 161 GSKSAAESVQMKGQPIQQNTNCCG 184
K +S GQ Q++ CCG
Sbjct: 796 TIKINQDSATGSGQAAQKSA-CCG 864
>TC77618 homologue to PIR|S57478|S57478 GTP-binding protein GTP13 - garden
pea, complete
Length = 1136
Score = 165 bits (417), Expect = 1e-41
Identities = 90/204 (44%), Positives = 128/204 (62%), Gaps = 25/204 (12%)
Frame = +2
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFAKPPSCRL------------ 53
DYL KLL+IGDS VGKSCLLLRF+D S+ ++I+TIG+DF K + L
Sbjct: 254 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF-KIRTIELDGKRIKLQIWDT 430
Query: 54 -------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCD 106
TIT++YYRGA GI++VYDVTD SFNN++ W+ I+++A+ +V+K+LVGNK D
Sbjct: 431 AGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKAD 610
Query: 107 LTDNK-LVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKM-----GSQPT 160
+ ++K V T +A ADE GI F ETSAK ++NVE+ F ++A +IK ++ ++P
Sbjct: 611 MDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQRLADTVSSTEPQ 790
Query: 161 GSKSAAESVQMKGQPIQQNTNCCG 184
K + G Q + CCG
Sbjct: 791 SIKINQQDQAANGGQAAQKSACCG 862
>TC85957 homologue to PIR|S57471|S57471 GTP-binding protein GTP6 - garden
pea, complete
Length = 1148
Score = 164 bits (415), Expect = 2e-41
Identities = 92/207 (44%), Positives = 135/207 (64%), Gaps = 28/207 (13%)
Frame = +3
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFAKPPSCRL------------ 53
DYL KLL+IGDS VGKSCLLLRF+D S+ ++I+TIG+DF K + L
Sbjct: 243 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF-KIRTIELDGKRIKLQIWDT 419
Query: 54 -------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCD 106
TIT++YYRGA GI++VYDVTD SFNN+K W+ I+++A+ +V+K+LVGNK D
Sbjct: 420 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIRNIEQHASDNVNKILVGNKAD 599
Query: 107 LTDNK-LVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSA 165
+ ++K V T +A ADE GI F ETSAK ++NV++ F ++A +IK ++ + SK+
Sbjct: 600 MDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVDEVFFSIARDIKQRLAE--SDSKTE 773
Query: 166 AESVQMKGQPIQ--------QNTNCCG 184
+++++ QP Q Q ++CCG
Sbjct: 774 PQTLKI-NQPDQGAGSAQASQTSSCCG 851
>TC85959 homologue to PIR|S57471|S57471 GTP-binding protein GTP6 - garden
pea, complete
Length = 886
Score = 159 bits (402), Expect = 6e-40
Identities = 84/169 (49%), Positives = 116/169 (67%), Gaps = 20/169 (11%)
Frame = +3
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFAKPPSCRL------------ 53
DYL KLL+IGDS VGKSCLLLRF+D S+ ++I+TIG+DF K + L
Sbjct: 108 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF-KIRTIELDGKRIKLQIWDT 284
Query: 54 -------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCD 106
TIT++YYRGA GI++VYDVTD SFNN++ W+ I+++A+ +V+K+LVGNK D
Sbjct: 285 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 464
Query: 107 LTDNK-LVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNK 154
+ ++K V T +A ADE GI F ETSAK ++NVE+ F ++A +IK K
Sbjct: 465 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQK 611
>TC77239 homologue to GP|1370196|emb|CAA98175.1 RAB8D {Lotus japonicus},
partial (96%)
Length = 816
Score = 150 bits (380), Expect = 2e-37
Identities = 80/159 (50%), Positives = 109/159 (68%), Gaps = 20/159 (12%)
Frame = +1
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFAKPPSCRL------------ 53
DYL KLL+IGDS VGKSCLLLRF+D S+ ++I+TIG+DF K + L
Sbjct: 232 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF-KIRTIELDGKRIKLQIWDT 408
Query: 54 -------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCD 106
TIT++YYRGA GI++VYDVTD SFNN++ W+ I+++A+ +V+K+LVGNK D
Sbjct: 409 AGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKAD 588
Query: 107 LTDNK-LVHTHTAKAFADELGIPFLETSAKDSINVEQAF 144
+ ++K V T +A ADE GI F ETSAK ++NVE+ F
Sbjct: 589 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 705
>TC77335 homologue to GP|1370176|emb|CAA98165.1 RAB2A {Lotus japonicus},
complete
Length = 1121
Score = 133 bits (334), Expect = 5e-32
Identities = 71/167 (42%), Positives = 102/167 (60%), Gaps = 18/167 (10%)
Frame = +3
Query: 7 YLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFA--------KPPSCRL----- 53
YLFK +IIGD+ VGKSCLLL+F D + + TIGV+F KP ++
Sbjct: 243 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 422
Query: 54 -----TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDLT 108
+IT SYYRGA G ++VYD+T E+FN++ WL + ++AN +++ +L+GNKCDL
Sbjct: 423 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 602
Query: 109 DNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKM 155
+ V T + FA E G+ F+E SAK + NVE+AF+ A I K+
Sbjct: 603 HRRAVSTEEGEQFAKENGLIFMEASAKTAQNVEEAFIKTAGTIYKKI 743
>TC80761 homologue to GP|1370174|emb|CAA98164.1 RAB1Y {Lotus japonicus},
partial (94%)
Length = 994
Score = 127 bits (320), Expect = 2e-30
Identities = 83/199 (41%), Positives = 110/199 (54%), Gaps = 21/199 (10%)
Frame = +1
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF------AKPPSCRL------ 53
DY+FKLL+IGDS VGKS LLLRF D +DD TIGVDF + +L
Sbjct: 142 DYMFKLLMIGDSGVGKSSLLLRFTSDDFDD-LSPTIGVDFKVKYVTIEGKKLKLAIWDTA 318
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQ-WLHEIDRYA-NHSVSKLLVGNKC 105
T+TSSYYRGA GII+VYDVT E+F N+ + W EID Y+ N K+LVGNK
Sbjct: 319 GQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEIWAKEIDLYSTNQDCMKMLVGNKV 498
Query: 106 DLTDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSA 165
D +++V FA E G F+E SAK +NV+Q F + ++ + GSK
Sbjct: 499 DKEGDRVVTKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKVLDTPSLLAEGSKGV 678
Query: 166 AESV-QMKGQPIQQNTNCC 183
+++ + K Q + CC
Sbjct: 679 KKNIFKDKPQSDASASGCC 735
>AL385573 homologue to GP|11558647|em secretion related GTPase (SrgA)
{Aspergillus niger}, partial (61%)
Length = 463
Score = 124 bits (311), Expect = 2e-29
Identities = 62/127 (48%), Positives = 85/127 (66%), Gaps = 19/127 (14%)
Frame = +2
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFAKPPSCRL------------ 53
DYL KLL+IGDS VGKSCLLLRF+DDS+ ++I+TIG+DF K + L
Sbjct: 83 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTPSFITTIGIDF-KIRTIELDGKRIKLQIWDT 259
Query: 54 -------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCD 106
TIT++YYRGA GI++VYDVTD SF N++ W I+++A+ V+K+L+GNKCD
Sbjct: 260 AGQERFRTITTAYYRGAMGILLVYDVTDERSFKNIRNWFSNIEQHASEGVNKILIGNKCD 439
Query: 107 LTDNKLV 113
+ K +
Sbjct: 440 WVEKKAI 460
>TC86724 homologue to PIR|T06445|T06445 GTP-binding protein - garden pea,
complete
Length = 1037
Score = 124 bits (310), Expect = 3e-29
Identities = 73/192 (38%), Positives = 113/192 (58%), Gaps = 21/192 (10%)
Frame = +3
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFA--------KPPSCRL---- 53
DY+FK+++IGDS+VGKS +L RF+ + + STIGV+F K ++
Sbjct: 216 DYVFKVVLIGDSAVGKSQILARFSRNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTA 395
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
+TS+YYRGA G ++VYD+T ++F+++ +WL E+ +A+ ++ +LVGNK DL
Sbjct: 396 GQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILVGNKSDL 575
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAE---IKNKMGSQPTGSKS 164
+ + V T AK FA++ G+ FLETSA + NVE +F+T+ E I NK S+
Sbjct: 576 ENQRDVPTEDAKEFAEKEGLFFLETSALQATNVEASFMTVLTEIYNIVNKKNLAADESQG 755
Query: 165 AAESVQMKGQPI 176
S + GQ I
Sbjct: 756 NGNSASLLGQKI 791
>BG585169 similar to GP|1370152|emb RAB11F {Lotus japonicus}, partial (83%)
Length = 668
Score = 123 bits (309), Expect = 4e-29
Identities = 70/164 (42%), Positives = 97/164 (58%), Gaps = 18/164 (10%)
Frame = +3
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFA--------KPPSCRL---- 53
DYLFK ++IGDS VGKS L+ RF D + TIGV+F K ++
Sbjct: 147 DYLFKTVLIGDSGVGKSNLISRFTKDEFRLDSKPTIGVEFGYKNIKVRDKLIKAQIWDTA 326
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
ITSSYYRGA G ++VYD+T I +F N+K+WLHE+ + N + +LV NK DL
Sbjct: 327 GQERFRAITSSYYRGALGAMLVYDITRIITFVNIKKWLHELREFGNEDMVIILVANKSDL 506
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEI 151
+ ++ V K FA++ G+ F+ETSA ++NVE AFL M +I
Sbjct: 507 SQSREVEKEEGKGFAEKEGLCFMETSALQNLNVEDAFLEMITKI 638
>TC82103 similar to GP|1370144|emb|CAA98178.1 RAB11B {Lotus japonicus},
partial (80%)
Length = 1513
Score = 122 bits (305), Expect = 1e-28
Identities = 74/194 (38%), Positives = 115/194 (59%), Gaps = 21/194 (10%)
Frame = +1
Query: 1 DFDFS---DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPP 49
D+D DY+FK+++IGDS+VGK+ +L RF+ + + STIGV+F K
Sbjct: 184 DYDMEEKIDYVFKVVVIGDSAVGKTQILSRFSKNEFCFDSKSTIGVEFQTRTVTINGKVI 363
Query: 50 SCRL----------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKL 99
++ +TS+YYRGA G ++VYD+T +SF++V +W+ E+ +A++S+ +
Sbjct: 364 KAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVAKWVEELRAHADNSIVIM 543
Query: 100 LVGNKCDLTDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQP 159
LVGNK DL D ++V T A FA++ G+ F ETSA +NVE AF+ + EI + +
Sbjct: 544 LVGNKGDLVDLRMVPTEDAVEFAEDQGLFFSETSALTGVNVEGAFMKLLEEINSVV---- 711
Query: 160 TGSKSAAESVQMKG 173
SK A E +KG
Sbjct: 712 --SKKALECGNVKG 747
>TC87022 homologue to SP|O04486|RB1C_ARATH Ras-related protein Rab11C.
[Mouse-ear cress] {Arabidopsis thaliana}, partial (81%)
Length = 1014
Score = 121 bits (304), Expect = 1e-28
Identities = 80/206 (38%), Positives = 119/206 (56%), Gaps = 28/206 (13%)
Frame = +2
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFA--------KPPSCRL---- 53
DYLFK+++IGDS VGKS LL RF + + STIGV+FA + ++
Sbjct: 80 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTA 259
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
ITS+YYRGA G ++VYDVT +F+NV +WL E+ +A+ ++ +L+GNK DL
Sbjct: 260 GQERYRAITSAYYRGALGALLVYDVTKPTTFDNVTRWLKELRDHADANIVIMLIGNKTDL 439
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMG--SQPTGSKSA 165
+ V T A+++A++ G+ F+ETSA ++ NVE+AF T EI + S T ++ A
Sbjct: 440 KHLRAVATEDAQSYAEKEGLSFIETSALEATNVEKAFQTTLGEIYRIISKKSLSTANEPA 619
Query: 166 AESVQMKGQPI------QQNTN--CC 183
A + +G+ I NTN CC
Sbjct: 620 AAANIKEGKTIAIGGSETTNTNKPCC 697
>TC86480 homologue to SP|Q40193|R11C_LOTJA Ras-related protein Rab11C.
{Lotus japonicus}, complete
Length = 1173
Score = 120 bits (301), Expect = 3e-28
Identities = 68/179 (37%), Positives = 107/179 (58%), Gaps = 18/179 (10%)
Frame = +3
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFA--------KPPSCRL---- 53
DYLFK+++IGDS VGKS +L RF + + STIGV+FA K ++
Sbjct: 222 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTA 401
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
ITS+YYRGA G ++VYD+T ++F+NV +WL E+ +A+ ++ ++ GNK DL
Sbjct: 402 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVNRWLRELRDHADSNIVIMMAGNKSDL 581
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAA 166
+ V +A A++ G+ FLETSA ++ N+E+AF T+ EI + + + ++ AA
Sbjct: 582 NHLRAVSEDDGQALAEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEAA 758
>TC87342 PIR|S41431|S41431 GTP-binding protein ras-like - fava bean,
complete
Length = 995
Score = 120 bits (300), Expect = 4e-28
Identities = 74/193 (38%), Positives = 110/193 (56%), Gaps = 19/193 (9%)
Frame = +3
Query: 3 DFSDYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFA--------KPPSCRL- 53
D DYLFK+++IGDS VGKS LL RF + ++ STIGV+FA K ++
Sbjct: 96 DDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSKVIKAQIW 275
Query: 54 ---------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNK 104
ITS+YYRGA G ++VYDVT +F NV +WL E+ + + ++ +LVGNK
Sbjct: 276 DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELRNHTDSNIVVMLVGNK 455
Query: 105 CDLTDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPT-GSK 163
DL V T K++A++ + F+ETSA ++ NVE AF + +I + + G++
Sbjct: 456 ADLRHLVAVSTEDGKSYAEKESLYFMETSALEATNVENAFAEVLTQIYRIVSKKAVEGAE 635
Query: 164 SAAESVQMKGQPI 176
+ SV KG+ I
Sbjct: 636 NGNASVPAKGEKI 674
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.134 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,586,554
Number of Sequences: 36976
Number of extensions: 68664
Number of successful extensions: 440
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of query: 184
length of database: 9,014,727
effective HSP length: 90
effective length of query: 94
effective length of database: 5,686,887
effective search space: 534567378
effective search space used: 534567378
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Medicago: description of AC140549.10