BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140546.1 - phase: 0
(720 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86593 similar to GP|20258963|gb|AAM14197.1 putative eukaryotic... 640 0.0
TC86589 similar to GP|7576200|emb|CAB87861.1 protein synthesis i... 243 2e-64
TC86607 similar to GP|20258963|gb|AAM14197.1 putative eukaryotic... 200 1e-51
BG586288 similar to GP|20258963|gb putative eukaryotic initiatio... 145 2e-37
TC88245 similar to GP|8118607|gb|AAF73054.1| protein synthesis i... 117 2e-26
TC85265 similar to GP|10177300|dbj|BAB10561. topoisomerase-like ... 61 1e-09
TC77828 similar to GP|16648867|gb|AAL24285.1 HSP associated prot... 44 3e-04
BQ144129 similar to GP|7576200|emb protein synthesis initiation ... 40 0.003
BQ751233 similar to GP|18307448|em probable low-affinity hexose ... 36 0.045
BI272031 weakly similar to GP|50502|emb|C collagen alpha chain p... 36 0.045
TC93065 35 0.10
BG454776 weakly similar to PIR|T49896|T4 glycine/proline-rich pr... 32 0.86
TC77530 similar to GP|14532822|gb|AAK64093.1 unknown protein {Ar... 32 0.86
TC82284 weakly similar to GP|11119510|gb|AAF37724.2 diaphanous p... 31 1.9
AL383436 homologue to GP|22136904|gb| unknown protein {Arabidops... 31 1.9
TC88663 similar to GP|8778473|gb|AAF79481.1| F1L3.23 {Arabidopsi... 31 1.9
BQ151354 homologue to GP|860970|emb|C HP8 peptide {Homo sapiens}... 30 2.5
BQ144502 weakly similar to GP|6523547|emb hydroxyproline-rich gl... 30 3.3
TC76346 similar to GP|16649017|gb|AAL24360.1 epsin-like protein ... 30 3.3
BQ147950 30 3.3
>TC86593 similar to GP|20258963|gb|AAM14197.1 putative eukaryotic initiation
factor 4 {Arabidopsis thaliana}, partial (60%)
Length = 2236
Score = 640 bits (1652), Expect(2) = 0.0
Identities = 324/327 (99%), Positives = 324/327 (99%)
Frame = +3
Query: 394 LGLRPGATAGMRNTRVTGVQGNTGAGGFPIARPGTGGLMPGMPGARKMPGMPGIDNDNWE 453
L PGATAGMRNTRVTGVQGNTGAGGFPIARPGTGGLMPGMPGARKMPGMPGIDNDNWE
Sbjct: 837 LDCXPGATAGMRNTRVTGVQGNTGAGGFPIARPGTGGLMPGMPGARKMPGMPGIDNDNWE 1016
Query: 454 VPRTRSMPRGDMSGAQTGGRGQSPYLSKPSVINSKLLPQGSSGLISGKNSALVLGGGTPS 513
VPRTRSMPRGDMSGAQTGGRGQSPYLSKPSVINSKLLPQGSSGLISGKNSALVLGGGTPS
Sbjct: 1017 VPRTRSMPRGDMSGAQTGGRGQSPYLSKPSVINSKLLPQGSSGLISGKNSALVLGGGTPS 1196
Query: 514 ALPSNIVSGTEPAPQIPSPVKPVSAASPEKPQAPAVKLNIDDLHRKTVSLLEEYFNVRLL 573
ALPSNIVSGTEPAPQIPSPVKPVSAASPEKPQAPAVKLNIDDLHRKTVSLLEEYFNVRLL
Sbjct: 1197 ALPSNIVSGTEPAPQIPSPVKPVSAASPEKPQAPAVKLNIDDLHRKTVSLLEEYFNVRLL 1376
Query: 574 DEALQCVEELKAPTYHPEVVKEAISLGLDKSPPRVEPVANLIEYLFTKKILTARDIGTGC 633
DEALQCVEELKAPTYHPEVVKEAISLGLDKSPPRVEPVANLIEYLFTKKILTARDIGTGC
Sbjct: 1377 DEALQCVEELKAPTYHPEVVKEAISLGLDKSPPRVEPVANLIEYLFTKKILTARDIGTGC 1556
Query: 634 LLFASLLDDIGIDLPKAPNNFGEIIGKLVLSAGLDFKVVKEILKKVGDDYFQKAIFNSAV 693
LLFASLLDDIGIDLPKAPNNFGEIIGKLVLSAGLDFKVVKEILKKVGDDYFQKAIFNSAV
Sbjct: 1557 LLFASLLDDIGIDLPKAPNNFGEIIGKLVLSAGLDFKVVKEILKKVGDDYFQKAIFNSAV 1736
Query: 694 QVISSASGQAVLDSQASDIEACQALFE 720
QVISSASGQAVLDSQASDIEACQALFE
Sbjct: 1737 QVISSASGQAVLDSQASDIEACQALFE 1817
Score = 527 bits (1358), Expect(2) = 0.0
Identities = 270/281 (96%), Positives = 270/281 (96%)
Frame = +2
Query: 116 GGGPAPTLVKAEVPWSARRGTLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSAD 175
GGGPAPTLVKAEVPWSA LKTVKGILNKLTPEKFDLLKGQLIDSGITSAD
Sbjct: 2 GGGPAPTLVKAEVPWSAIWELSLTGIVWLKTVKGILNKLTPEKFDLLKGQLIDSGITSAD 181
Query: 176 ILKGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPSFPSEESGGKEITFKRLLLDNCQEA 235
ILKGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPSFPSEESGGKEITFKRLLLDNCQEA
Sbjct: 182 ILKGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPSFPSEESGGKEITFKRLLLDNCQEA 361
Query: 236 FEGAGKLREELAQMTSPEQETERRDKDRLVKIRTLGNIRLIGELLKQKMVPERIVHHIVQ 295
FEGAGKLREELAQMTSPEQETERRDKDRLVKIRTLGNIRLIGELLKQKMVPERIVHHIVQ
Sbjct: 362 FEGAGKLREELAQMTSPEQETERRDKDRLVKIRTLGNIRLIGELLKQKMVPERIVHHIVQ 541
Query: 296 ELLGAADSNVCPAEENVEAICHFFNTIGKQLDESPKSRRINDMYFGRLKELSTNPQLAPR 355
ELLGAADSNVCPAEENVEAICHFFNTIGKQLDESPKSRRINDMYFGRLKELSTNPQLAPR
Sbjct: 542 ELLGAADSNVCPAEENVEAICHFFNTIGKQLDESPKSRRINDMYFGRLKELSTNPQLAPR 721
Query: 356 MKFMVRDVIDLRASNWVPRREEIKAKTISEIHDEAEKNLGL 396
MKFMVRDVIDLRASNWVPRREEIKAKTISEIHDEAEKNLGL
Sbjct: 722 MKFMVRDVIDLRASNWVPRREEIKAKTISEIHDEAEKNLGL 844
>TC86589 similar to GP|7576200|emb|CAB87861.1 protein synthesis initiation
factor-like {Arabidopsis thaliana}, partial (28%)
Length = 2539
Score = 243 bits (619), Expect = 2e-64
Identities = 194/642 (30%), Positives = 308/642 (47%), Gaps = 55/642 (8%)
Frame = +3
Query: 119 PAPTLVKAEVPWSARRGTLSDKDRVL-KTVKGILNKLTPEKFDLLKGQLIDSGITSADIL 177
P T+ KAE + G ++D+++ + +KGILNKLTP+ F+ L Q+ I +A L
Sbjct: 249 PLVTMHKAEKKYEV--GKVTDEEQAKQRQLKGILNKLTPQNFEKLFEQVKAVNIDNAVTL 422
Query: 178 KGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPSFPSEESGGKEITFKRLLLDNCQEAFE 237
GVIS IF+KA++EPTFC MYA C L LP + ++ITFKRLLL+ CQE FE
Sbjct: 423 TGVISQIFEKALMEPTFCEMYANFCFHLAVALPDLSQD---NEKITFKRLLLNKCQEEFE 593
Query: 238 GAGKLREELAQMTSPE---QETERRDKDRLVKIRTLGNIRLIGELLKQKMVPERIVHHIV 294
+ +EE + E + ER +K + R LGNIRLIGEL K+KM+ ERI+H +
Sbjct: 594 RGEREQEEANKADEGEVKQSDEEREEKRTKARRRMLGNIRLIGELYKKKMLTERIMHECI 773
Query: 295 QELLGAADSNVCPAEENVEAICHFFNTIGKQLDESPKSRRINDMYFGRLKELSTNPQLAP 354
++LLG + P EE++EA+C +TIG+ +D PK++ D+YF R+K LS N L+
Sbjct: 774 KKLLGQCQN---PDEEDIEALCKLMSTIGEMIDH-PKAKEHMDVYFERIKLLSNNMNLSS 941
Query: 355 RMKFMVRDVIDLRASNWVPRREEIKAKTISEIHDEAEKNLGLRPGATA-GMRNTRVTGVQ 413
R++FM++D IDLR + W RR+ K I E+H +A + + G T GM
Sbjct: 942 RLRFMLKDTIDLRKNRWQQRRKVEGPKKIEEVHRDASQERQSQAGRTGRGM--------- 1094
Query: 414 GNTGAGGFPIARPGTGGLMPGMPGARKMPGMP------------GIDNDNWEVPRTRSM- 460
G A P+ G M P A +M G+P G + ++E RT S+
Sbjct: 1095GINAARRVPMDFGSRGSSMLSSPNA-QMGGLPTQVRGYGSQDARGYERQSYEA-RTLSIP 1268
Query: 461 ----PRGD--MSGAQTGGRGQSPYLSKPSVINSKLLPQGSSGLISGKNSALVLGGGTPSA 514
P GD ++ GG + + P ++S P G S S + S T
Sbjct: 1269LPQRPLGDDSITLVPQGGLARGMSIRGPPAVSSFAGPNGYS-TSSDRTSFNPREDLTSRY 1445
Query: 515 LPSNIVSGTEPAPQIPSP--------------VKPVSAASPEKPQAPAVKLNI------- 553
+P+ S + + + +PV + P + Q V N
Sbjct: 1446VPNRFSSPNQTSAHEHNMNYGNRDLRNADRLLDRPVVISPPARAQETTVSQNTSSEKGMS 1625
Query: 554 -DDLHRKTVSLLEEYFNVRLLDEALQCVEELKAPTYHPEVVKEAISLGLDKSPPRVEPVA 612
+ L +++ + EY++ R ++E + C+++L + ++HP +V ++ ++ + +A
Sbjct: 1626EEQLQNMSMAAIREYYSARDVNEVVLCIKDLNSTSFHPSMVSVWVTDSFERKDTERDLLA 1805
Query: 613 NLIEYLFTKK--ILTARDIGTGCLLFASLLDDIGIDLPKAPNNFGEIIGKLVLSAGLDFK 670
L+ L L+ + G S L+D+ D PKAP G I K + + K
Sbjct: 1806KLLIDLVKSHGGTLSQAQLIKGFESVLSNLEDVVTDAPKAPEFLGRIFAKSITEHVVSLK 1985
Query: 671 VVKEILKKVGDD-------YFQKAIFNSAVQVISSASGQAVL 705
+ ++ G++ I S ++VI + G A L
Sbjct: 1986DIGRLIHNGGEEPGSLLQIGLAADILGSTLEVIQTDKGDAFL 2111
>TC86607 similar to GP|20258963|gb|AAM14197.1 putative eukaryotic initiation
factor 4 {Arabidopsis thaliana}, partial (4%)
Length = 744
Score = 200 bits (509), Expect = 1e-51
Identities = 94/95 (98%), Positives = 95/95 (99%)
Frame = +1
Query: 1 VGDSQFESRERVRYTKEELLHIRETLEETPEDILKLRHDIDAELFGEDQSWGRVENNPPT 60
VGDSQFESRERVRYTKEELLHIRETLEETPEDILKLRHDIDAELFGEDQSWGRVENNPPT
Sbjct: 445 VGDSQFESRERVRYTKEELLHIRETLEETPEDILKLRHDIDAELFGEDQSWGRVENNPPT 624
Query: 61 QIQNRYSEPDNRDWRGRSAQPPANADERSWDNIKE 95
QIQNRYSEPDNRDWRGRSAQPPANADER+WDNIKE
Sbjct: 625 QIQNRYSEPDNRDWRGRSAQPPANADERAWDNIKE 729
>BG586288 similar to GP|20258963|gb putative eukaryotic initiation factor 4
{Arabidopsis thaliana}, partial (20%)
Length = 710
Score = 145 bits (365), Expect(2) = 2e-37
Identities = 75/129 (58%), Positives = 90/129 (69%)
Frame = +3
Query: 377 EIKAKTISEIHDEAEKNLGLRPGATAGMRNTRVTGVQGNTGAGGFPIARPGTGGLMPGMP 436
++KAKTI+EIH +AEKN+GLRPGATA MR + + +P RPG GGLMPGMP
Sbjct: 120 QMKAKTITEIHSDAEKNMGLRPGATANMRKGMASSSGPLSHGPIYPGGRPGAGGLMPGMP 299
Query: 437 GARKMPGMPGIDNDNWEVPRTRSMPRGDMSGAQTGGRGQSPYLSKPSVINSKLLPQGSSG 496
G R+MPG P DNDNWEVPRTRSM R D GG SP + K + +N++LLPQGSSG
Sbjct: 300 GTRRMPGAPVGDNDNWEVPRTRSMSRRD----GPGGSLHSPAMGKSTSMNTRLLPQGSSG 467
Query: 497 LISGKNSAL 505
+SGK SAL
Sbjct: 468 FMSGKTSAL 494
Score = 30.0 bits (66), Expect(2) = 2e-37
Identities = 11/17 (64%), Positives = 14/17 (81%)
Frame = +1
Query: 364 IDLRASNWVPRREEIKA 380
IDLR+ WVPRREE+ +
Sbjct: 4 IDLRSDGWVPRREEVSS 54
>TC88245 similar to GP|8118607|gb|AAF73054.1| protein synthesis initiation
factor 4G; EIF4G {Arabidopsis thaliana}, partial (24%)
Length = 1927
Score = 117 bits (292), Expect = 2e-26
Identities = 67/144 (46%), Positives = 93/144 (64%), Gaps = 3/144 (2%)
Frame = +3
Query: 268 RTLGNIRLIGELLKQKMVPERIVHHIVQELLGAADSNVCPAEENVEAICHFFNTIGKQLD 327
R LGNIRLIGEL K+KM+ ERI+H +++LLG P EE+VEA+C +TIG+ +D
Sbjct: 33 RMLGNIRLIGELYKKKMLTERIMHECIKKLLGQCQD---PDEEDVEALCKLMSTIGEMID 203
Query: 328 ESPKSRRINDMYFGRLKELSTNPQLAPRMKFMVRDVIDLRASNWVPRREEIKAKTISEIH 387
PK++ D+YF RLK LS N L+ R++FM++DVIDLR + W RR+ K I E+H
Sbjct: 204 H-PKAKEHMDVYFERLKILSNNMNLSSRVRFMLKDVIDLRRNRWQVRRKVDGPKKIEEVH 380
Query: 388 DEA--EKNLGLRPGATA-GMRNTR 408
+A E+ + G T GM N +
Sbjct: 381 RDAVQERQAQAQVGRTGRGMGNNQ 452
Score = 64.7 bits (156), Expect = 1e-10
Identities = 40/170 (23%), Positives = 82/170 (47%), Gaps = 5/170 (2%)
Frame = +1
Query: 534 KPVSAASPEKPQAPAVKLNI---DDLHRKTVSLLEEYFNVRLLDEALQCVEELKAPTYHP 590
+PV+ + +PQ P V N + L ++S + +Y++ R ++E QC+++L +P +HP
Sbjct: 955 RPVATSPHAQPQGPIVSQNASTDEQLRDMSLSAIRKYYSARDVNEVAQCIKDLNSPNFHP 1134
Query: 591 EVVKEAISLGLDKSPPRVEPVANLIEYLFTKK--ILTARDIGTGCLLFASLLDDIGIDLP 648
+V ++ ++ + +A L+ L + +L+ + G S L+D D P
Sbjct: 1135 SMVSLWVTDSFERKDAERDLLAKLLVKLGKSQDGLLSPTQLIEGFETVLSTLEDAVNDAP 1314
Query: 649 KAPNNFGEIIGKLVLSAGLDFKVVKEILKKVGDDYFQKAIFNSAVQVISS 698
KAP G I +L+ + + + +++ G++ F A V+ S
Sbjct: 1315 KAPEFLGRIFAELITESLVGLNEIGQLVHDGGEEPGSLLEFGLAADVLGS 1464
>TC85265 similar to GP|10177300|dbj|BAB10561. topoisomerase-like protein
{Arabidopsis thaliana}, partial (56%)
Length = 1803
Score = 61.2 bits (147), Expect = 1e-09
Identities = 31/102 (30%), Positives = 57/102 (55%)
Frame = +3
Query: 553 IDDLHRKTVSLLEEYFNVRLLDEALQCVEELKAPTYHPEVVKEAISLGLDKSPPRVEPVA 612
++D K LLEEY + ++ EA QC+ +L P ++ EVVK+A+ + ++K R +
Sbjct: 936 VEDAKDKITKLLEEYESGGVVGEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDR---ML 1106
Query: 613 NLIEYLFTKKILTARDIGTGCLLFASLLDDIGIDLPKAPNNF 654
+L++ F++ ++T + G LDD+ +D+P A F
Sbjct: 1107 DLLQECFSEGLITTNQLTKGFTRIKEGLDDLALDIPNAKEKF 1232
Score = 54.7 bits (130), Expect = 1e-07
Identities = 33/128 (25%), Positives = 64/128 (49%), Gaps = 1/128 (0%)
Frame = +3
Query: 542 EKPQAPAVKLNIDDLHRKTVSLLEEYFNVRLLDEALQCVEELKAPTYHPEVVKEAISLGL 601
E+ + + ++++ +K LL+EY + EA +C+ EL +H EVVK+A+ L +
Sbjct: 12 ERRWGGSTHITVEEMKKKIADLLKEYVDSGETLEACRCIRELGVAFFHHEVVKKALVLAM 191
Query: 602 DKSPPRVEP-VANLIEYLFTKKILTARDIGTGCLLFASLLDDIGIDLPKAPNNFGEIIGK 660
+ P EP + L++ + ++++ + G LDD+ +D+P A F + K
Sbjct: 192 E--IPSAEPLLLKLLKEAAAEGLISSSQMVKGFSRLEEGLDDLALDIPSAKALFQSFVPK 365
Query: 661 LVLSAGLD 668
+ LD
Sbjct: 366 AISEGWLD 389
Score = 48.5 bits (114), Expect = 9e-06
Identities = 35/149 (23%), Positives = 70/149 (46%)
Frame = +3
Query: 552 NIDDLHRKTVSLLEEYFNVRLLDEALQCVEELKAPTYHPEVVKEAISLGLDKSPPRVEPV 611
N+ ++ V+++ EYF + E ++ +E+L AP Y+P +K I+L LD+ E
Sbjct: 444 NVRKYKKEAVTIIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKRLITLALDRKNREKEMA 623
Query: 612 ANLIEYLFTKKILTARDIGTGCLLFASLLDDIGIDLPKAPNNFGEIIGKLVLSAGLDFKV 671
+ L+ L +I + DI G ++ +D +D+ A N + + AG++ +
Sbjct: 624 SVLLSALHI-EIFSTEDIVNGFVMLLENAEDTTLDILDASNELALFLAR----AGIEDVL 788
Query: 672 VKEILKKVGDDYFQKAIFNSAVQVISSAS 700
L ++G K + V++ + S
Sbjct: 789 APLNLDEIGSRLPPKCSGSETVRMARTLS 875
>TC77828 similar to GP|16648867|gb|AAL24285.1 HSP associated protein like
{Arabidopsis thaliana}, partial (83%)
Length = 1587
Score = 43.5 bits (101), Expect = 3e-04
Identities = 35/96 (36%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Frame = +3
Query: 374 RREEIKA---KTISEIHDEAEKNLGLRPGA-TAGMRNTRVTGVQGN-TGAGGFPIARPGT 428
RR E +A K + + +N G PG GM G+ G GAGG P PG
Sbjct: 879 RRAEAQAAYEKAKKQEQSSSSRNPGGMPGGFPGGMPGGFPGGMPGGFPGAGGMPGGFPGA 1058
Query: 429 GGLMPGMPGARKMP-GMPGIDNDNWEVPRTRSMPRG 463
GG+ G PGA MP G PG P MP G
Sbjct: 1059GGMPGGFPGAGGMPGGFPGAGGMPGGFPGAGGMPGG 1166
Score = 37.7 bits (86), Expect = 0.016
Identities = 19/34 (55%), Positives = 21/34 (60%), Gaps = 1/34 (2%)
Frame = +3
Query: 414 GNTGAGGFPIARPGTGGLMPGMPGARKMP-GMPG 446
G GAGG P PG GG+ G PGA MP G+PG
Sbjct: 1074 GFPGAGGMPGGFPGAGGMPGGFPGAGGMPGGVPG 1175
>BQ144129 similar to GP|7576200|emb protein synthesis initiation factor-like
{Arabidopsis thaliana}, partial (4%)
Length = 707
Score = 40.0 bits (92), Expect = 0.003
Identities = 16/62 (25%), Positives = 35/62 (55%)
Frame = +3
Query: 554 DDLHRKTVSLLEEYFNVRLLDEALQCVEELKAPTYHPEVVKEAISLGLDKSPPRVEPVAN 613
D L +S + EY++ R ++E QC+++L +P +HP +V ++ ++ + +A
Sbjct: 372 DHLRDMCLSTIREYYSARDVNEIAQCIKDLNSPNFHPSMVSLWVTNSFERKDAERDLLAK 551
Query: 614 LI 615
L+
Sbjct: 552 LL 557
>BQ751233 similar to GP|18307448|em probable low-affinity hexose transporter
HXT3 {Neurospora crassa}, partial (30%)
Length = 659
Score = 36.2 bits (82), Expect = 0.045
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +1
Query: 490 LPQGSSGLISGKNSALVLGGGTPSALPSNIVSGTEPAPQI-----PSPVKPVSAASPEKP 544
LP G + + S ++ G +PSA+ S+ VS + P+P PSP++P SAAS +P
Sbjct: 406 LPSGPASVSSSRSRPSPPGTSSPSAV-SSTVSASAPSPSSSPCTSPSPLRPSSAASSSRP 582
>BI272031 weakly similar to GP|50502|emb|C collagen alpha chain precursor (AA
-27 to 1127) {Mus musculus}, partial (3%)
Length = 540
Score = 36.2 bits (82), Expect = 0.045
Identities = 21/48 (43%), Positives = 25/48 (51%)
Frame = -3
Query: 399 GATAGMRNTRVTGVQGNTGAGGFPIARPGTGGLMPGMPGARKMPGMPG 446
G G+ + V GV G G G P PG MPG+PG +PGMPG
Sbjct: 340 GVVDGLGDAGVLGVFGVPGHPGMP-GNPG----MPGIPGISGIPGMPG 212
Score = 30.8 bits (68), Expect = 1.9
Identities = 21/54 (38%), Positives = 27/54 (49%)
Frame = -3
Query: 394 LGLRPGATAGMRNTRVTGVQGNTGAGGFPIARPGTGGLMPGMPGARKMPGMPGI 447
LG + G+ + V+GV G G + G G PGMPG MPG+PGI
Sbjct: 391 LGAGESSGLGVGESGVSGVVDGLGDAGV-LGVFGVPG-HPGMPGNPGMPGIPGI 236
>TC93065
Length = 783
Score = 35.0 bits (79), Expect = 0.10
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +2
Query: 239 AGKLREELAQMTSPEQETERRDKDRLVKIRTLGNIRLIGELLKQKMVPERIV 290
+ KLR E + E ET R DR+ K+ T IRL+GE L + V E+I+
Sbjct: 206 SAKLRREFEALKMKETETVREFSDRISKVVT--QIRLLGEDLSDQRVVEKIL 355
>BG454776 weakly similar to PIR|T49896|T4 glycine/proline-rich protein -
Arabidopsis thaliana, partial (7%)
Length = 680
Score = 32.0 bits (71), Expect = 0.86
Identities = 32/87 (36%), Positives = 36/87 (40%), Gaps = 4/87 (4%)
Frame = -3
Query: 395 GLRPGATAGMRNTRVTGVQGNTGAGGFPIARPGT-GGLMPG-MPGARKMPGMPGIDNDNW 452
G RPG T G R R +G + G P RPG G PG PG R PG W
Sbjct: 504 GCRPGRTPGRRPGRWSGCRLGRKPGRMPGRRPGRWSGCRPGRTPGHR--PG-------RW 352
Query: 453 EVPRTRSMPRGDMSGAQTGGR--GQSP 477
R MP D +T GR G+ P
Sbjct: 351 SGSRPGRMP--DRRPGRTPGRRPGRKP 277
Score = 30.0 bits (66), Expect = 3.3
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +2
Query: 395 GLRPGATAGMRNTRVTGVQGNTGAGGFPIARPGTGGLMPGM-PGAR--KMPGM-PGI 447
GLRPG G+ + G++ G P RP GL PG+ PG R + PG+ PG+
Sbjct: 470 GLRPGVRPGLHPDQRPGLRPGVRPGLHPDQRP---GLRPGL*PGLRPDQRPGVRPGL 631
>TC77530 similar to GP|14532822|gb|AAK64093.1 unknown protein {Arabidopsis
thaliana}, partial (93%)
Length = 2520
Score = 32.0 bits (71), Expect = 0.86
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Frame = +3
Query: 510 GTPSALPSNIVSGTEPAPQIPSPVKPVSAASPE---KPQAPAVKLNIDDLHRKTVSLLE- 565
G ALP+ +GT + + AS + K Q P V + DD H +T+ LLE
Sbjct: 774 GIKVALPAETTTGTRFLQHYIESILALQEASSDGEGKTQIPFVIMTSDDTHGRTLELLES 953
Query: 566 -EYFNVR------LLDEALQCVE 581
YF ++ L E + C+E
Sbjct: 954 NSYFGMQPTQVTLLKQEKVACLE 1022
>TC82284 weakly similar to GP|11119510|gb|AAF37724.2 diaphanous protein
{Entamoeba histolytica}, partial (4%)
Length = 671
Score = 30.8 bits (68), Expect = 1.9
Identities = 30/99 (30%), Positives = 36/99 (36%)
Frame = -1
Query: 417 GAGGFPIARPGTGGLMPGMPGARKMPGMPGIDNDNWEVPRTRSMPRGDMSGAQTGGRGQS 476
GAGG G GG+ PG+ + G GID D +P G G+ GG G
Sbjct: 254 GAGG------GRGGIAPGLGPFAAIGGGGGIDPDIGGGGARGGLPIGAPGGSPCGGGG-- 99
Query: 477 PYLSKPSVINSKLLPQGSSGLISGKNSALVLGGGTPSAL 515
G SG G L GGTP A+
Sbjct: 98 ---------------GGGSGACGGGGIGL---GGTPGAV 36
>AL383436 homologue to GP|22136904|gb| unknown protein {Arabidopsis
thaliana}, partial (9%)
Length = 422
Score = 30.8 bits (68), Expect = 1.9
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Frame = -1
Query: 167 IDSGITSADIL-----KGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPSFPSEESGGKE 221
I GI +IL K V+S +FD L P +C + ++ + + +PSF +ESGG
Sbjct: 251 ISFGIEMREILPPCESKRVLSHLFDCKPLPP*YCFVVSR--ENSAKVIPSFNRDESGGTI 78
Query: 222 ITFKRL-LLDNCQE 234
RL LL +C+E
Sbjct: 77 F*ISRLSLLLSCRE 36
>TC88663 similar to GP|8778473|gb|AAF79481.1| F1L3.23 {Arabidopsis
thaliana}, partial (34%)
Length = 946
Score = 30.8 bits (68), Expect = 1.9
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Frame = +1
Query: 467 GAQTGGRGQSPYLSKPSVINSKLLPQGSSGLISGKNSALVLGGGTPSALPSNIVSGTEPA 526
G Q G G+ ++ K + KL + + L + V G P P SG+ PA
Sbjct: 343 GVQKYGAGKWKHILKDPQFSQKLASRSNIDLKDKWRNLNVFPGQNPKT-PKGKPSGSSPA 519
Query: 527 PQ----IPSPVKPVSAASPEKPQAPA 548
P PSP AAS P A A
Sbjct: 520 PSNATPSPSPAPGTPAASAGTPAAAA 597
>BQ151354 homologue to GP|860970|emb|C HP8 peptide {Homo sapiens}, partial
(6%)
Length = 1209
Score = 30.4 bits (67), Expect = 2.5
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 426 PGTGG--LMPGMPGARKMPGMPGIDNDNWEVPRTRSM 460
P GG L+P PG PGM G++++ W +P RSM
Sbjct: 447 PAGGGALLLPRRPGP---PGMAGVEHEVW*MPPARSM 548
>BQ144502 weakly similar to GP|6523547|emb hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (39%)
Length = 1358
Score = 30.0 bits (66), Expect = 3.3
Identities = 29/104 (27%), Positives = 39/104 (36%), Gaps = 5/104 (4%)
Frame = +2
Query: 412 VQGNTGAGGFPIARPGTGGLMPGMP---GARKMPGMPGIDNDNWEVPRTRSMPRGDMSGA 468
VQG GAG G G L PG+P + P D R R G
Sbjct: 275 VQGRRGAGWVGEGGAGDGALDPGVPPLGSFLTLARAPRRRPDGGRAGGRRGRGRWGAGGG 454
Query: 469 QTGGR--GQSPYLSKPSVINSKLLPQGSSGLISGKNSALVLGGG 510
+ GGR G + ++P ++ G+ GL G +GGG
Sbjct: 455 RAGGRRGGGAGGGARPRIVEGLWGGTGAGGLAGGGE----VGGG 574
Score = 29.6 bits (65), Expect = 4.2
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 399 GATAGMRNTRVTGVQGNTGAGGFPIARPG-TGGLMPGMPGARKMPGMPGIDNDNWEVPRT 457
GA G R V G+ G TGAGG +A G GG M + + PG +W+ R
Sbjct: 479 GAGGGARPRIVEGLWGGTGAGG--LAGGGEVGGGM*RLGREGRAPG-GAAHQFSWQEGRV 649
Query: 458 RSMPRGDMSGAQTGGRG 474
+P G+ G GG G
Sbjct: 650 -PIPGGEEGGGGGGGGG 697
>TC76346 similar to GP|16649017|gb|AAL24360.1 epsin-like protein
{Arabidopsis thaliana}, partial (11%)
Length = 1617
Score = 30.0 bits (66), Expect = 3.3
Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 6/112 (5%)
Frame = +1
Query: 436 PGARKMPGMPGIDNDNWEVPRTRSMPRGDMSGAQTGGRGQSPYLSKPSVIN---SKLLPQ 492
P PGMPG + + +G S AQT G S + + + Q
Sbjct: 190 PSHSGQPGMPGFSSSTGHSMQPPFASQGGQSTAQTSGHTYGGLYSLDTSLTPGAPNMYSQ 369
Query: 493 GSSGLISGKNSALVLGGGTPSALPSNI---VSGTEPAPQIPSPVKPVSAASP 541
+G NS L G+ + PS + +PA P S ASP
Sbjct: 370 SQNGYNGSMNSGNYLPQGSSTGFPSQMTPQAPTAQPAQITNFPHHGGSTASP 525
>BQ147950
Length = 433
Score = 30.0 bits (66), Expect = 3.3
Identities = 23/79 (29%), Positives = 31/79 (39%)
Frame = +3
Query: 422 PIARPGTGGLMPGMPGARKMPGMPGIDNDNWEVPRTRSMPRGDMSGAQTGGRGQSPYLSK 481
PIA PG PGMP PG P +PR ++P M T +
Sbjct: 45 PIA-PGGYYSAPGMPPTLPPPGAPLXXGQTNTLPRPATLPPPPMVPGNTAAPASN---GA 212
Query: 482 PSVINSKLLPQGSSGLISG 500
P +++S P SS +G
Sbjct: 213 PPMVSSATYPANSSAPXTG 269
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.314 0.135 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,931,170
Number of Sequences: 36976
Number of extensions: 252953
Number of successful extensions: 1253
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of query: 720
length of database: 9,014,727
effective HSP length: 103
effective length of query: 617
effective length of database: 5,206,199
effective search space: 3212224783
effective search space used: 3212224783
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Medicago: description of AC140546.1