BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140068.13 + phase: 0
(233 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC82418 similar to PIR|C86204|C86204 hypothetical protein [impor... 457 e-129
TC78767 similar to PIR|S59117|S59117 small nuclear ribonucleopro... 281 1e-76
TC88112 RNA-binding protein [Medicago truncatula] 51 3e-07
TC79394 weakly similar to PIR|T49019|T49019 probable RNA binding... 49 1e-06
TC78710 similar to GP|23304837|emb|CAD48198. RNA-binding protein... 49 2e-06
TC76331 similar to GP|7673355|gb|AAF66823.1| poly(A)-binding pro... 42 2e-04
TC77903 homologue to GP|21617984|gb|AAM67034.1 unknown {Arabidop... 42 3e-04
TC77904 homologue to GP|21617984|gb|AAM67034.1 unknown {Arabidop... 42 3e-04
TC78768 homologue to PIR|S59117|S59117 small nuclear ribonucleop... 39 0.001
TC76341 similar to GP|7528270|gb|AAF63202.1| poly(A)-binding pro... 38 0.004
TC76334 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein... 37 0.005
TC78771 similar to GP|16612268|gb|AAL27502.1 AT3g61860/F21F14_30... 37 0.006
TC79780 similar to GP|18377731|gb|AAL67015.1 putative DNA bindin... 37 0.006
AL368496 similar to GP|16612268|gb| AT3g61860/F21F14_30 {Arabido... 37 0.008
TC88996 similar to PIR|T00933|T00933 RNA-binding protein homolog... 36 0.014
TC90607 similar to GP|20466724|gb|AAM20679.1 unknown protein {Ar... 35 0.019
TC78841 similar to GP|5815235|gb|AAD52609.1| splicing factor SR1... 35 0.025
TC80464 weakly similar to GP|13548328|emb|CAC35875. putative pro... 34 0.042
BG450974 similar to PIR|T05112|T05 splicing factor 9G8-like SR p... 34 0.055
TC89403 similar to GP|17065074|gb|AAL32691.1 RNA-binding protein... 33 0.093
>TC82418 similar to PIR|C86204|C86204 hypothetical protein [imported] -
Arabidopsis thaliana, partial (83%)
Length = 731
Score = 457 bits (1175), Expect = e-129
Identities = 229/232 (98%), Positives = 231/232 (98%), Gaps = 1/232 (0%)
Frame = +2
Query: 3 SGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEV 62
SGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEV
Sbjct: 2 SGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEV 181
Query: 63 TAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADE 122
TAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADE
Sbjct: 182 TAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADE 361
Query: 123 SKQSAVPNGGTHGASNGGST-ASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQ 181
SKQSAVPNGGTHGASNGGST ASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQ
Sbjct: 362 SKQSAVPNGGTHGASNGGSTQASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQ 541
Query: 182 YPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
YPGFKEVRLIEAKPGIAFV+FE+DGQSSMAMQALQGFKITPQNPMIINFAKK
Sbjct: 542 YPGFKEVRLIEAKPGIAFVNFENDGQSSMAMQALQGFKITPQNPMIINFAKK 697
>TC78767 similar to PIR|S59117|S59117 small nuclear ribonucleoprotein U1A -
potato, partial (93%)
Length = 1455
Score = 281 bits (720), Expect = 1e-76
Identities = 144/236 (61%), Positives = 183/236 (77%), Gaps = 9/236 (3%)
Frame = +3
Query: 7 PPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAAS 66
P N TIYI NLNEKIK DELK+SL+ +FSQ+G+IL+++A KT K +GQAWV F +VT+AS
Sbjct: 477 PQNMTIYINNLNEKIKIDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVIFEDVTSAS 656
Query: 67 NAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESKQS 126
NA+RQMQ FPFY+KPMRIQYA+TKSD IAK EG+FVPREK+K+ ++KA KK+ D++ +
Sbjct: 657 NALRQMQGFPFYDKPMRIQYARTKSDVIAKAEGTFVPREKRKRHDDKAGKKR-KDQNDAN 833
Query: 127 AVPNG------GTHGASNGGSTASFRPGSGA---QEAAAPNNILFIENLPYETTGRMLEM 177
G G +GA+ S + G+ + + A PNNILFI+NLP ETT ML+M
Sbjct: 834 LAGTGLNPAYAGAYGATPALSQIPYPGGAKSLLPEAPAPPNNILFIQNLPNETTPMMLQM 1013
Query: 178 LFEQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
LF QYPGFKEVR++EAKPGIAFV++ D+ QS+MAMQALQGFKI PQNPM+I +AKK
Sbjct: 1014LFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTMAMQALQGFKIAPQNPMLITYAKK 1181
>TC88112 RNA-binding protein [Medicago truncatula]
Length = 1309
Score = 51.2 bits (121), Expect = 3e-07
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 17/112 (15%)
Frame = +3
Query: 131 GGTHGASNG-GSTASFRPGS------GAQEAAAPNNI---LFIENLPYETTGRMLEMLFE 180
GG A NG G F+P G + A P + L+IE LP + T R + +F
Sbjct: 516 GGPDLAPNGRGMNYGFQPPMDPVSRHGPEPALLPPDASPTLYIEGLPSDCTRREVAHIFR 695
Query: 181 QYPGFKEVRLI--EAKPG-----IAFVDFEDDGQSSMAMQALQGFKITPQNP 225
+ G++EVRL+ EAK + FVDF + ++ A+ ALQG+K+ NP
Sbjct: 696 PFVGYREVRLVSKEAKHRGDPLILCFVDFANPACAATALSALQGYKVDEINP 851
>TC79394 weakly similar to PIR|T49019|T49019 probable RNA binding protein -
Arabidopsis thaliana, partial (74%)
Length = 1909
Score = 49.3 bits (116), Expect = 1e-06
Identities = 47/248 (18%), Positives = 98/248 (38%), Gaps = 31/248 (12%)
Frame = +2
Query: 7 PPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAAS 66
P +YI + + + +L+ ++C G + ++ +K + +G A+V F AS
Sbjct: 431 PHGSEVYIGGIPHETSEKDLR--VFC--QSVGEVAEVRVMKGKEAKGYAFVTFKTKELAS 598
Query: 67 NAVRQMQNFPFYEKPMRIQYAKTK-----------------SDCIAKEEGSFVPREKKKK 109
NA++++ N F + ++ ++ K +AK + E K
Sbjct: 599 NALKELNNSEFKGRKIKCSPSQVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKD 778
Query: 110 QEEKAEKKKYA---------DESKQSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNI 160
+ + + +A E + + N +N + P + +++
Sbjct: 779 PQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSESSSSSQVKA 958
Query: 161 LFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPG-----IAFVDFEDDGQSSMAMQAL 215
++++NLP T L+ LFE + +V L AK G FV F D + A++
Sbjct: 959 VYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNT 1138
Query: 216 QGFKITPQ 223
+ ++I Q
Sbjct: 1139EKYEINGQ 1162
>TC78710 similar to GP|23304837|emb|CAD48198. RNA-binding protein {Medicago
truncatula}, partial (36%)
Length = 1262
Score = 48.9 bits (115), Expect = 2e-06
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Frame = +3
Query: 137 SNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLI---EA 193
S G S PG+ N LF+E LP T R + +F + G+KEVRL+
Sbjct: 495 SGGRPDHSLPPGA--------TNTLFVEGLPSNCTRREVAHIFRPFVGYKEVRLVSKESR 650
Query: 194 KPG-----IAFVDFEDDGQSSMAMQALQGFK 219
+PG + FVDF ++ AM AL G+K
Sbjct: 651 QPGGDPLLLCFVDFVSPAHAATAMDALHGYK 743
>TC76331 similar to GP|7673355|gb|AAF66823.1| poly(A)-binding protein
{Nicotiana tabacum}, partial (97%)
Length = 2581
Score = 42.0 bits (97), Expect = 2e-04
Identities = 46/237 (19%), Positives = 89/237 (37%), Gaps = 6/237 (2%)
Frame = +3
Query: 3 SGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALK--TPKLRGQAWVCFS 60
+GD +++KNL+E DELK++ F ++G I + ++ K + +V F
Sbjct: 960 TGDRAKFNNVFVKNLSESTTDDELKKT----FGEFGTITSAVVMRDGDGKSKCFGFVNFE 1127
Query: 61 EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYA 120
A+ AV + +K +V + +KK + E K K+
Sbjct: 1128 STDDAARAVEALNGKKIDDKEW------------------YVGKAQKKSEREHELKIKFE 1253
Query: 121 DESKQSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFE 180
K++A G + L+++NL L+ LF
Sbjct: 1254 QSMKEAADKYQGAN--------------------------LYVKNLDDSIADEKLKELFS 1355
Query: 181 QYPGFKEVRLIEAKPGIA----FVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
Y +++ G++ FV F ++S A+ + G K+ P+ + A++
Sbjct: 1356 SYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMNG-KMVASKPLYVTLAQR 1523
>TC77903 homologue to GP|21617984|gb|AAM67034.1 unknown {Arabidopsis
thaliana}, complete
Length = 802
Score = 41.6 bits (96), Expect = 3e-04
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +2
Query: 141 STASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKP--GIA 198
+T S R G+ + N +L++ NLP+ T + +F +Y +++R+ K G A
Sbjct: 59 TTISLRKGN-TRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTA 235
Query: 199 FVDFEDDGQSSMAMQALQGFKITPQNPMIINF 230
FV +ED + A+ L GF + + +++ +
Sbjct: 236 FVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 331
>TC77904 homologue to GP|21617984|gb|AAM67034.1 unknown {Arabidopsis
thaliana}, complete
Length = 695
Score = 41.6 bits (96), Expect = 3e-04
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +3
Query: 141 STASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKP--GIA 198
+T S R G+ + N +L++ NLP+ T + +F +Y +++R+ K G A
Sbjct: 60 TTISLRKGN-TRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTA 236
Query: 199 FVDFEDDGQSSMAMQALQGFKITPQNPMIINF 230
FV +ED + A+ L GF + + +++ +
Sbjct: 237 FVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 332
>TC78768 homologue to PIR|S59117|S59117 small nuclear ribonucleoprotein U1A
- potato, partial (15%)
Length = 619
Score = 39.3 bits (90), Expect = 0.001
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 7 PPNQTIYIKNLNEKIKKDELKRSL-YCLFSQYGRILDIIALKTPKLRGQA 55
P N TIYI NLNEKIK DE++ C + GR L + ++GQA
Sbjct: 461 PQNMTIYINNLNEKIKIDEVEEIFARCFSANLGRYLRFWLSRL*NIKGQA 610
>TC76341 similar to GP|7528270|gb|AAF63202.1| poly(A)-binding protein {Cucumis
sativus}, partial (90%)
Length = 2501
Score = 37.7 bits (86), Expect = 0.004
Identities = 44/228 (19%), Positives = 87/228 (37%), Gaps = 6/228 (2%)
Frame = +3
Query: 12 IYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQ--AWVCFSEVTAASNAV 69
+Y+KNL+E +D+LK F YG I + ++ R + +V F A+ AV
Sbjct: 837 VYVKNLSESFTEDDLKNE----FGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAV 1004
Query: 70 RQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESKQSAVP 129
+ +K +V + +KK + E+ K ++ K+S V
Sbjct: 1005 EALNGKKVDDKEW------------------YVGKAQKKSEREQELKGRFEQTVKESVVD 1130
Query: 130 NGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVR 189
G + L+++NL T L+ +F ++ +
Sbjct: 1131 K--FQGLN-----------------------LYLKNLDDSITDEKLKEMFSEFGTITSYK 1235
Query: 190 LIEAKPGIA----FVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
++ G++ FV F ++S A+ + G K+ P+ + A++
Sbjct: 1236 IMRDPNGVSRGSGFVAFSTPEEASRALGEMNG-KMIVSKPLYVAVAQR 1376
>TC76334 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein 45
{Nicotiana plumbaginifolia}, partial (68%)
Length = 1579
Score = 37.4 bits (85), Expect = 0.005
Identities = 35/132 (26%), Positives = 57/132 (42%), Gaps = 16/132 (12%)
Frame = +1
Query: 102 VPREKKKKQEE---------KAEKKKYADESKQSAVPNGGTHGASNGGSTASFRPGS-GA 151
V R K+ Q E +A ++ + +PNGG + N A+F G +
Sbjct: 322 VIRNKQTSQSEGYGFIEFNTRATAERVLQTYNGTIMPNGGQNYRLNW---ATFSAGERSS 492
Query: 152 QEAAAPNNILFIENLPYETTGRMLEMLFE----QYPGFKEV--RLIEAKPGIAFVDFEDD 205
++ P++ +F+ +L + T +L+ F G K V RL G FV F D+
Sbjct: 493 RQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADE 672
Query: 206 GQSSMAMQALQG 217
G+ AM +QG
Sbjct: 673 GEQMRAMTEMQG 708
>TC78771 similar to GP|16612268|gb|AAL27502.1 AT3g61860/F21F14_30
{Arabidopsis thaliana}, partial (87%)
Length = 1254
Score = 37.0 bits (84), Expect = 0.006
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +1
Query: 161 LFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQAL 215
+F NL Y+T LE LF +Y + ++ K G AFV +ED+ + A++AL
Sbjct: 97 VFAGNLEYDTRQSELERLFSKYG---RIERVDMKSGFAFVYYEDERDAEEAIRAL 252
>TC79780 similar to GP|18377731|gb|AAL67015.1 putative DNA binding protein
ACBF {Arabidopsis thaliana}, partial (67%)
Length = 1649
Score = 37.0 bits (84), Expect = 0.006
Identities = 23/91 (25%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Frame = +2
Query: 6 IPP-----NQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFS 60
+PP N TIY+ NL+ + ++ELK++ F Q+G +I+++K + +V F
Sbjct: 731 VPPEYDVNNTTIYVGNLDLNVSEEELKQN----FLQFG---EIVSVKVHPGKACGFVQFG 889
Query: 61 EVTAASNAVRQMQNFPFYEKPMRIQYAKTKS 91
+A A+++MQ ++ +R+ + + ++
Sbjct: 890 ARASAEEAIQKMQGKILGQQVIRVSWGRPQT 982
>AL368496 similar to GP|16612268|gb| AT3g61860/F21F14_30 {Arabidopsis
thaliana}, partial (36%)
Length = 616
Score = 36.6 bits (83), Expect = 0.008
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = -2
Query: 162 FIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQAL 215
F NL Y+T LE LF +Y + ++ K G AFV +ED+ + A++AL
Sbjct: 594 FAGNLEYDTRQSELERLFSKYG---RIERVDMKSGFAFVYYEDERDAEEAIRAL 442
>TC88996 similar to PIR|T00933|T00933 RNA-binding protein homolog At2g42240
- Arabidopsis thaliana, partial (51%)
Length = 651
Score = 35.8 bits (81), Expect = 0.014
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Frame = +2
Query: 155 AAPNNI--LFIENLPYETTGRMLEMLFEQYPGFKEVRL---IEAKPGIAFVDFEDDGQSS 209
A+ N++ LFI LP + R + LF ++PG++ L + AF F + +
Sbjct: 254 ASTNDVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPNNSSQAFAFAVFSNQQSAI 433
Query: 210 MAMQALQG--FKITPQNPMIINFAK 232
MA+ AL G F + + + I+ AK
Sbjct: 434 MALHALNGMIFDLEKGSTLYIDLAK 508
>TC90607 similar to GP|20466724|gb|AAM20679.1 unknown protein {Arabidopsis
thaliana}, partial (49%)
Length = 1143
Score = 35.4 bits (80), Expect = 0.019
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = +1
Query: 151 AQEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLI-----EAKPGIAFVDFEDD 205
+QEA+ LF+ L + T+ + L FE + EV++I + G AF+++ +
Sbjct: 553 SQEASVKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTE 732
Query: 206 GQSSMAMQALQGFKITPQNPMIINFAK 232
+S A++ + G KI ++++ AK
Sbjct: 733 EAASAALKEMNG-KIINGWMIVVDVAK 810
>TC78841 similar to GP|5815235|gb|AAD52609.1| splicing factor SR1
{Arabidopsis thaliana}, partial (74%)
Length = 1380
Score = 35.0 bits (79), Expect = 0.025
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +3
Query: 149 SGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRL-IEAKP-GIAFVDFEDDG 206
SG + + + L++ NLP + R +E LF +Y ++ L I KP G AFV+FED
Sbjct: 30 SGKKMSGRSSRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDAR 209
Query: 207 QSSMAMQALQGF 218
+ A+ G+
Sbjct: 210 DAQDAIYYRDGY 245
>TC80464 weakly similar to GP|13548328|emb|CAC35875. putative protein
{Arabidopsis thaliana}, partial (19%)
Length = 1437
Score = 34.3 bits (77), Expect = 0.042
Identities = 19/58 (32%), Positives = 29/58 (49%), Gaps = 5/58 (8%)
Frame = +3
Query: 161 LFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAK-----PGIAFVDFEDDGQSSMAMQ 213
LF+ NLPY TT LE F Q+ + L+ K GIA++ F ++ A++
Sbjct: 1005 LFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALE 1178
>BG450974 similar to PIR|T05112|T05 splicing factor 9G8-like SR protein
RSZp22 [validated] - Arabidopsis thaliana, partial (54%)
Length = 364
Score = 33.9 bits (76), Expect = 0.055
Identities = 19/57 (33%), Positives = 28/57 (48%)
Frame = +1
Query: 161 LFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQG 217
++I NL T R LE F Y + V + PG AF++F+D + A+ L G
Sbjct: 49 VYIGNLDPRVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDPRDALDAIHELDG 219
>TC89403 similar to GP|17065074|gb|AAL32691.1 RNA-binding protein MEI2
putative {Arabidopsis thaliana}, partial (13%)
Length = 952
Score = 33.1 bits (74), Expect = 0.093
Identities = 24/101 (23%), Positives = 39/101 (37%)
Frame = +3
Query: 116 KKKYADESKQSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRML 175
K +D S +++P GG+ A P P+ LF+ N+ L
Sbjct: 636 KLSLSDSSVGNSMPPYSLPNGVGGGAVAGEHP-----YGEHPSRTLFVRNINSNVEDTEL 800
Query: 176 EMLFEQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQ 216
LFEQY + + G + + D + A++ALQ
Sbjct: 801 RTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTALRALQ 923
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.315 0.133 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,814,135
Number of Sequences: 36976
Number of extensions: 64762
Number of successful extensions: 699
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of query: 233
length of database: 9,014,727
effective HSP length: 93
effective length of query: 140
effective length of database: 5,575,959
effective search space: 780634260
effective search space used: 780634260
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 57 (26.6 bits)
Medicago: description of AC140068.13