BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140030.9 - phase: 0 /pseudo
(113 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG647239 similar to GP|6045193|dbj| cytochrome c oxidase subunit... 28 0.40
TC89980 similar to PIR|D96512|D96512 hypothetical protein F2G19.... 27 0.90
TC78885 similar to GP|20160912|dbj|BAB89849. putative transcript... 27 1.2
AW328857 similar to GP|9858483|gb|A resistance protein MG55 {Gly... 26 2.0
BQ137239 similar to GP|6523547|emb| hydroxyproline-rich glycopro... 26 2.0
AW689210 weakly similar to GP|20260444|gb| glycine-rich RNA-bind... 26 2.0
TC85239 similar to GP|20975622|emb|CAD31716. putative ripening r... 26 2.6
TC88244 homologue to GP|7385201|gb|AAF61730.1| beta-ketoacyl-ACP... 26 2.6
TC85249 similar to GP|20975622|emb|CAD31716. putative ripening r... 26 2.6
TC85356 weakly similar to GP|9294294|dbj|BAB02196.1 gene_id:F20C... 25 3.4
TC78370 similar to GP|5001828|gb|AAD37165.1| 3-phosphoinositide-... 25 3.4
BF645180 weakly similar to GP|16226290|gb At1g18480/F15H18_1 {Ar... 25 3.4
AW697072 weakly similar to GP|17979155|gb| unknown protein {Arab... 25 4.5
BQ144477 similar to GP|11321713|gb| L218.4 {Leishmania major}, p... 25 4.5
TC76983 similar to PIR|T12198|T12198 sucrose transport protein -... 25 5.8
TC76529 similar to PIR|S35757|S35757 vicilin 47K - garden pea, ... 25 5.8
BG583351 similar to PIR|T47427|T474 hypothetical protein T22K7.5... 25 5.8
TC76981 similar to PIR|T12198|T12198 sucrose transport protein -... 25 5.8
TC92049 similar to PIR|T01061|T01061 hypothetical protein YUP8H1... 25 5.8
TC76530 similar to SP|P13918|VCLC_PEA Vicilin precursor. [Garden... 25 5.8
>BG647239 similar to GP|6045193|dbj| cytochrome c oxidase subunit 1
{Echinococcus multilocularis}, partial (5%)
Length = 717
Score = 28.5 bits (62), Expect = 0.40
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 6 WKVRGKEKGYLRASFWSLYSEAYGSER 32
WK R K KGY W L+S+ E+
Sbjct: 372 WKTRAKHKGYSPTVVWCLFSDGSVEEK 292
>TC89980 similar to PIR|D96512|D96512 hypothetical protein F2G19.16
[imported] - Arabidopsis thaliana, partial (22%)
Length = 980
Score = 27.3 bits (59), Expect = 0.90
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 50 SITDVVGGDHRVLKILMEELKRKGGGSGG 78
+I VVGGDHR + +GGGSGG
Sbjct: 573 NIVAVVGGDHR---------RNQGGGSGG 514
>TC78885 similar to GP|20160912|dbj|BAB89849. putative transcription
initiation factor {Oryza sativa (japonica
cultivar-group)}, partial (67%)
Length = 1073
Score = 26.9 bits (58), Expect = 1.2
Identities = 13/29 (44%), Positives = 16/29 (54%)
Frame = +1
Query: 57 GDHRVLKILMEELKRKGGGSGGGNLEMEK 85
G+ +I ME+ GG SGG NLE K
Sbjct: 28 GEEDHSRIKMEDENSYGGSSGGSNLETSK 114
>AW328857 similar to GP|9858483|gb|A resistance protein MG55 {Glycine max},
partial (29%)
Length = 534
Score = 26.2 bits (56), Expect = 2.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 4 KRWKVRGKEKGYLRASFWSLYSEAYGSERC 33
K W V GK +LR + W + + +G+ RC
Sbjct: 343 KTW*VLGKR**FLRTTVWYI*RKCHGNYRC 254
>BQ137239 similar to GP|6523547|emb| hydroxyproline-rich glycoprotein DZ-HRGP
{Volvox carteri f. nagariensis}, partial (13%)
Length = 1097
Score = 26.2 bits (56), Expect = 2.0
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = +2
Query: 53 DVVGGDHRVLKILMEELKRKGGGSGGG----NLEMEKVFKLAREVYGKV 97
+ G+ R LK K GGG GGG E+ +AR+ Y K+
Sbjct: 269 NTTAGEERTLKKKQTSEKGGGGGEGGGAGGEGGGAEEEGTVARDAYAKI 415
>AW689210 weakly similar to GP|20260444|gb| glycine-rich RNA-binding protein
putative {Arabidopsis thaliana}, partial (25%)
Length = 633
Score = 26.2 bits (56), Expect = 2.0
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 43 ALDAVVDSITDVVGGDHRVLKILMEELKRKGGGSGGGNLEMEK 85
A+DA+ D + G RV+K+ +K +GGGSG N E+
Sbjct: 241 AIDAINDMNGRTING--RVVKV--NGVKSRGGGSGRSNFGRER 357
>TC85239 similar to GP|20975622|emb|CAD31716. putative ripening related
protein {Cicer arietinum}, partial (98%)
Length = 838
Score = 25.8 bits (55), Expect = 2.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 78 GGNLEMEKVFKLAREVYGKVVKKQAMR 104
GG++E KVFKL EV K A+R
Sbjct: 336 GGDIENYKVFKLILEVLNKADGSSAVR 416
>TC88244 homologue to GP|7385201|gb|AAF61730.1| beta-ketoacyl-ACP synthetase
I {Glycine max}, partial (89%)
Length = 1768
Score = 25.8 bits (55), Expect = 2.6
Identities = 10/24 (41%), Positives = 15/24 (61%)
Frame = -1
Query: 57 GDHRVLKILMEELKRKGGGSGGGN 80
G+H L ++ L+R GGG GG+
Sbjct: 235 GNHNTLLWILFSLRRSGGGDRGGD 164
>TC85249 similar to GP|20975622|emb|CAD31716. putative ripening related
protein {Cicer arietinum}, partial (53%)
Length = 577
Score = 25.8 bits (55), Expect = 2.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 78 GGNLEMEKVFKLAREVYGKVVKKQAMR 104
GG++E KVFKL EV K A+R
Sbjct: 400 GGDIENYKVFKLILEVLNKADGSSAVR 480
>TC85356 weakly similar to GP|9294294|dbj|BAB02196.1
gene_id:F20C19.8~unknown protein {Arabidopsis thaliana},
partial (81%)
Length = 1274
Score = 25.4 bits (54), Expect = 3.4
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = -2
Query: 67 EELKRKGGGSGGGN---LEMEKVFKLA 90
+ LK GGG GGG E E+VF+++
Sbjct: 115 DTLKEGGGGGGGGG*GLFENERVFQIS 35
>TC78370 similar to GP|5001828|gb|AAD37165.1| 3-phosphoinositide-dependent
protein kinase-1 {Arabidopsis thaliana}, partial (91%)
Length = 2137
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 13/26 (49%)
Frame = +1
Query: 62 LKILMEELKRKGGGSGGGNLEMEKVF 87
LKI GGG G GN++ K F
Sbjct: 358 LKIQRSSSSSNGGGGGAGNVQRSKSF 435
>BF645180 weakly similar to GP|16226290|gb At1g18480/F15H18_1 {Arabidopsis
thaliana}, partial (32%)
Length = 650
Score = 25.4 bits (54), Expect = 3.4
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 46 AVVDSITDVV--GGDHRVLKILMEELKRKGGGSGGGNLEM 83
A V I DV+ GGD + L+E+LKR+ GG + M
Sbjct: 296 ATVVQIGDVLDRGGDEIKILYLLEKLKRQAAIHGGNFITM 415
>AW697072 weakly similar to GP|17979155|gb| unknown protein {Arabidopsis
thaliana}, partial (21%)
Length = 739
Score = 25.0 bits (53), Expect = 4.5
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 47 VVDSITDVVGGDHRVLKILM--EELKRKGGGSGGGNLEMEKVFKLAR 91
V D IT GGD + +K + + + GGG GGG L ++ + LAR
Sbjct: 392 VWDRITGPCGGD-KCVKCCVGGKGVLGAGGGRGGGEL*WQRSWGLAR 529
>BQ144477 similar to GP|11321713|gb| L218.4 {Leishmania major}, partial
(2%)
Length = 1304
Score = 25.0 bits (53), Expect = 4.5
Identities = 10/13 (76%), Positives = 11/13 (83%)
Frame = -1
Query: 66 MEELKRKGGGSGG 78
ME+ KRKGGG GG
Sbjct: 41 MEKNKRKGGGGGG 3
>TC76983 similar to PIR|T12198|T12198 sucrose transport protein - fava bean,
partial (40%)
Length = 674
Score = 24.6 bits (52), Expect = 5.8
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = +2
Query: 28 YGSERCMKRWGRRIPALDA 46
Y S+RC R+GRR P + A
Sbjct: 263 YHSDRCTSRFGRRRPFIAA 319
>TC76529 similar to PIR|S35757|S35757 vicilin 47K - garden pea, partial (94%)
Length = 1588
Score = 24.6 bits (52), Expect = 5.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 7 KVRGKEKGYLRASFWSLYSE 26
KV ++KG L FW L++E
Sbjct: 1388 KVEARDKGSLFLQFWELFNE 1447
>BG583351 similar to PIR|T47427|T474 hypothetical protein T22K7.50 -
Arabidopsis thaliana, partial (7%)
Length = 793
Score = 24.6 bits (52), Expect = 5.8
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -3
Query: 72 KGGGSGGGNL 81
KGGG+GGGNL
Sbjct: 407 KGGGNGGGNL 378
>TC76981 similar to PIR|T12198|T12198 sucrose transport protein - fava bean,
partial (71%)
Length = 1224
Score = 24.6 bits (52), Expect = 5.8
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = +2
Query: 28 YGSERCMKRWGRRIPALDA 46
Y S+RC R+GRR P + A
Sbjct: 311 YHSDRCTSRFGRRRPFIAA 367
>TC92049 similar to PIR|T01061|T01061 hypothetical protein YUP8H12R.45 -
Arabidopsis thaliana, partial (16%)
Length = 1079
Score = 24.6 bits (52), Expect = 5.8
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3
Query: 71 RKGGGSGGGN 80
RKGGG GGGN
Sbjct: 54 RKGGGGGGGN 83
>TC76530 similar to SP|P13918|VCLC_PEA Vicilin precursor. [Garden pea] {Pisum
sativum}, partial (90%)
Length = 1549
Score = 24.6 bits (52), Expect = 5.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 7 KVRGKEKGYLRASFWSLYSE 26
KV ++KG L FW L++E
Sbjct: 1353 KVEARDKGSLFLQFWELFNE 1412
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.138 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,369,701
Number of Sequences: 36976
Number of extensions: 40014
Number of successful extensions: 369
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of query: 113
length of database: 9,014,727
effective HSP length: 89
effective length of query: 24
effective length of database: 5,723,863
effective search space: 137372712
effective search space used: 137372712
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)
Medicago: description of AC140030.9