BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140028.7 + phase: 0 /pseudo
(703 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC79605 similar to GP|14532660|gb|AAK64058.1 putative cyclic nuc... 391 e-119
BI270981 similar to PIR|T51354|T51 cyclic nucleotide-regulated i... 234 8e-62
AW126067 similar to GP|7228242|emb cyclic nucleotide gated chann... 209 3e-54
TC89790 similar to PIR|T51519|T51519 cyclic nucleotide-gated cat... 187 2e-47
TC92051 similar to GP|4378659|gb|AAD19610.1| cyclic nucleotide g... 151 7e-37
TC91288 similar to PIR|T51354|T51354 cyclic nucleotide-regulated... 128 9e-30
AW256509 weakly similar to GP|8131898|gb| cyclic nucleotide-bind... 102 4e-22
TC89327 similar to PIR|T52572|T52572 cyclic nucleotide and calmo... 102 5e-22
BE326002 similar to GP|21703138|gb| AT4g30360/F17I23_300 {Arabid... 57 6e-18
TC91950 similar to PIR|T51354|T51354 cyclic nucleotide-regulated... 88 1e-17
TC90335 similar to PIR|T07651|T07651 potassium channel protein S... 75 7e-14
TC88080 similar to GP|6562375|emb|CAB62555.1 potassium channel {... 72 7e-13
AJ547908 weakly similar to GP|9294159|dbj| cyclic nucleotide and... 67 3e-11
AW688130 similar to PIR|G84682|G846 hypothetical protein At2g282... 64 1e-10
BG451461 weakly similar to GP|8131898|gb|A cyclic nucleotide-bin... 63 4e-10
BE326167 similar to GP|20268758|gb| putative cyclic nucleotide a... 55 7e-08
BF638007 similar to GP|22136698|gb| putative cyclic nucleotide a... 55 9e-08
AL381557 similar to GP|9294159|dbj| cyclic nucleotide and calmod... 49 7e-06
BE325461 weakly similar to GP|9294159|dbj| cyclic nucleotide and... 47 2e-05
TC93638 similar to GP|9294159|dbj|BAB02061.1 cyclic nucleotide a... 39 0.007
>TC79605 similar to GP|14532660|gb|AAK64058.1 putative cyclic nucleotide and
calmodulin-regulated ion channel protein {Arabidopsis
thaliana}, partial (65%)
Length = 1371
Score = 391 bits (1005), Expect(2) = e-119
Identities = 201/342 (58%), Positives = 254/342 (73%)
Frame = +2
Query: 361 VAEINFAVIVAILGLVLFALLIGNMQTYLQSTTIRLEEWRIRRTDTERWMHHRQLPHYLK 420
+ ++F +AI GL+LFALLIGNMQTYLQS T+RLEE R++R D+E+WMHHR LP L+
Sbjct: 107 LGRLSFQ*TLAIAGLILFALLIGNMQTYLQSLTLRLEEMRVKRRDSEQWMHHRLLPKELR 286
Query: 421 ENVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAI 480
E VRR+DQ++W+ATRGVDE+ +++ LP DLRRDIKRHLCL LVR+VPLF+ MD+R+LDAI
Sbjct: 287 ERVRRYDQYKWLATRGVDEDILVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAI 466
Query: 481 CERLKPTLCTPGTCIVREGDPVDEMLFIVRGRLDSCTTNGGRTGFFNTCRIGSGDFCGEE 540
CERLKP L T T IVREGDPVDEMLFI+RGRL+S TT+GGR+GFFN + +FCGEE
Sbjct: 467 CERLKPCLFTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTYLKEAEFCGEE 646
Query: 541 LLPWALDPRPTAVLPSSTRTVRAITEVEAFALIAEDLKFVAAQFRRLHSKQLRQTFRFYS 600
LL WALDPR + LP+STRTV+A+TEVE FAL A++LKFVA+QFRRLHS+Q++ TFRFYS
Sbjct: 647 LLTWALDPRSGSNLPTSTRTVKALTEVETFALTADELKFVASQFRRLHSRQVQHTFRFYS 826
Query: 601 HQWRTWAACFIQAAWFRYKRMKETNEVKEKENLMMMSNVKYYGNDDSQYFSAPLQVPKGS 660
QWRTWAACFIQAAW RY + K+ +++ KE S+ G+ S A L K
Sbjct: 827 QQWRTWAACFIQAAWRRYCK-KKIMKLRMKEEEADESHGNASGSSSS--LGAALLASK-- 991
Query: 661 SYSMYSGKLVGSLRRGRSMRYGSELDMLGTLRKPIEPDFNDD 702
++ + + + R R + E L L+KP EPDF D
Sbjct: 992 ----FAARTLRGVHRNRLAKTARE---LVKLQKPPEPDFTAD 1096
Score = 57.8 bits (138), Expect(2) = e-119
Identities = 23/41 (56%), Positives = 32/41 (77%)
Frame = +1
Query: 328 ITSSNFLTKYYYCLWWGLRNLSSSGENLLTSTHVAEINFAV 368
I+S F+TKY YCLWWGL+NLS+ G+ L TST+ E+ F++
Sbjct: 7 ISSKKFITKYLYCLWWGLQNLSTLGQGLQTSTYPGEVIFSI 129
>BI270981 similar to PIR|T51354|T51 cyclic nucleotide-regulated ion channel 1
[validated] - Arabidopsis thaliana, partial (20%)
Length = 455
Score = 234 bits (597), Expect = 8e-62
Identities = 111/150 (74%), Positives = 130/150 (86%)
Frame = +2
Query: 469 FDQMDDRMLDAICERLKPTLCTPGTCIVREGDPVDEMLFIVRGRLDSCTTNGGRTGFFNT 528
F++MD+++LDA+C+ LKP L T +CIVREGDPVDEMLFI+RG+L + TTNGGRTGFFN+
Sbjct: 2 FEKMDEQLLDAVCDCLKPVLYTKESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNS 181
Query: 529 CRIGSGDFCGEELLPWALDPRPTAVLPSSTRTVRAITEVEAFALIAEDLKFVAAQFRRLH 588
+ +GDFCGEELL WALDPR + LP STRTV+ ++EVEAFAL AEDLKFVA+QFRRLH
Sbjct: 182 EYLKAGDFCGEELLTWALDPRSASNLPISTRTVQTLSEVEAFALKAEDLKFVASQFRRLH 361
Query: 589 SKQLRQTFRFYSHQWRTWAACFIQAAWFRY 618
SKQLR TFRFYS QWRTWAACFIQAAW RY
Sbjct: 362 SKQLRHTFRFYSQQWRTWAACFIQAAWRRY 451
>AW126067 similar to GP|7228242|emb cyclic nucleotide gated channel (CNGC4)
like protein {Arabidopsis thaliana}, partial (21%)
Length = 451
Score = 209 bits (532), Expect = 3e-54
Identities = 93/150 (62%), Positives = 126/150 (84%)
Frame = +2
Query: 379 ALLIGNMQTYLQSTTIRLEEWRIRRTDTERWMHHRQLPHYLKENVRRHDQFRWVATRGVD 438
ALLIGNMQ YLQSTT+R+EE RI+R D E+WM HR LP ++K+ +RR++Q++W RGV+
Sbjct: 2 ALLIGNMQKYLQSTTVRVEEMRIKRRDAEQWMCHRMLPDHMKQRIRRYEQYKWQENRGVE 181
Query: 439 EEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAICERLKPTLCTPGTCIVRE 498
EE ++ +LP DLRRDI+RHLCL+L+++VP+F MD ++LDA+C++LKP L T + +VRE
Sbjct: 182 EEKLICNLPKDLRRDIRRHLCLDLLKKVPIFSNMDKQLLDAMCDKLKPVLYTEKSFVVRE 361
Query: 499 GDPVDEMLFIVRGRLDSCTTNGGRTGFFNT 528
GDPVDEMLFI+RG+L + TTNGGRTGFFN+
Sbjct: 362 GDPVDEMLFIMRGKLKTATTNGGRTGFFNS 451
>TC89790 similar to PIR|T51519|T51519 cyclic nucleotide-gated cation channel
- Arabidopsis thaliana, partial (33%)
Length = 1146
Score = 187 bits (474), Expect = 2e-47
Identities = 98/220 (44%), Positives = 138/220 (62%), Gaps = 1/220 (0%)
Frame = +1
Query: 402 RRTDTERWMHHRQLPHYLKENVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLN 461
R D E WM RQLP L++ VR ++ RW A G DE +++DLP LRRDIKRHLCL+
Sbjct: 1 RCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMELIKDLPEGLRRDIKRHLCLD 180
Query: 462 LVRQVPLFDQMDDRMLDAICERLKPTLCTPGTCIVREGDPVDEMLFIVRGRLDSCTTNGG 521
L+++VPLF +DD +LD IC+R+KP + + I+REGDPV M+FIVRGR+
Sbjct: 181 LIKKVPLFHNLDDLILDNICDRVKPLVFSRDEKIIREGDPVPRMVFIVRGRIK--RNQSL 354
Query: 522 RTGFFNTCRIGSGDFCGEELLPWALDPRPTAVLPSSTRTVRAITEVEAFALIAEDLKFVA 581
G T + G F G+ELL W L LP+S+ T + EAF L A++L+++
Sbjct: 355 SKGIVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCLESTEAFGLDAQNLRYIT 534
Query: 582 AQFR-RLHSKQLRQTFRFYSHQWRTWAACFIQAAWFRYKR 620
FR + +++L++T R+YS WRTWAA IQ A+ RY++
Sbjct: 535 DHFRYKFANERLKRTARYYSSNWRTWAAVNIQLAYRRYRQ 654
>TC92051 similar to GP|4378659|gb|AAD19610.1| cyclic nucleotide gated
channel {Arabidopsis thaliana}, partial (25%)
Length = 665
Score = 151 bits (382), Expect = 7e-37
Identities = 86/176 (48%), Positives = 109/176 (61%), Gaps = 11/176 (6%)
Frame = +1
Query: 255 STWYLLSIERQDECWKKACTLQYPHCQYH--YLDCQSLSDPNRNAWLKSSNLSGLCD--- 309
+ WYLLS+E Q CW+ + +H +L C RNA + S L+G C
Sbjct: 163 ANWYLLSVESQVRCWR---IVMNNASIFHDSFLGCGP-----RNATVLSL-LNGACTLVD 315
Query: 310 ----QNSHFFQFGIFDDAVTLEITSSN--FLTKYYYCLWWGLRNLSSSGENLLTSTHVAE 363
N+ F FGIF DA+ + SN F K++YC WWGLRNLSS G+NL T+T+V E
Sbjct: 316 PDEINNTTTFNFGIFYDALQSLVVDSNTDFPQKFFYCFWWGLRNLSSLGQNLKTTTYVTE 495
Query: 364 INFAVIVAILGLVLFALLIGNMQTYLQSTTIRLEEWRIRRTDTERWMHHRQLPHYL 419
I FA+ +AI GLVLF+LLIGNMQ YL+STT+R EE R++R D ERWM HR LP L
Sbjct: 496 IAFAIFIAIFGLVLFSLLIGNMQKYLESTTVREEEMRVKRRDAERWMSHRMLPDNL 663
>TC91288 similar to PIR|T51354|T51354 cyclic nucleotide-regulated ion
channel 1 [validated] - Arabidopsis thaliana, partial
(22%)
Length = 841
Score = 128 bits (321), Expect = 9e-30
Identities = 71/163 (43%), Positives = 97/163 (58%), Gaps = 2/163 (1%)
Frame = +2
Query: 41 SHMEMRAYEMSSEYKHG-KDAINKPSSNGRGLSRVFSEDYDAGEILVFDPRGPRINLWNK 99
S+ R +E SSE G K S L+R FS + DP+GP + WNK
Sbjct: 356 SNKFQRGFESSSERIKGFAKKPFKSFSQSSALTRCFSSRNK-----ILDPQGPFLQKWNK 520
Query: 100 IFLAACLISLFVDPLFFYLPVAKK-EKCIDMSIGLEVSLTIIRTFVDAFYIIHIYIRFQT 158
IF+ +CLI++ +DPLFFY+PV +KC+ +E + T++R+F D FYIIHI +F+T
Sbjct: 521 IFVLSCLIAVSIDPLFFYIPVIDDGKKCLSRDKKMETTATVLRSFSDIFYIIHIIFQFRT 700
Query: 159 AYIAPSSRVSGRGELIIDSSKIASNYMKKELWSDLVAALPLPQ 201
+IAPSSRV GRG L+ D+ IA YM D++A LPLPQ
Sbjct: 701 GFIAPSSRVFGRGVLVQDAWAIAKRYMSSYFLXDILAVLPLPQ 829
>AW256509 weakly similar to GP|8131898|gb| cyclic nucleotide-binding
transporter 1 {Arabidopsis thaliana}, partial (21%)
Length = 566
Score = 102 bits (255), Expect = 4e-22
Identities = 72/194 (37%), Positives = 105/194 (54%), Gaps = 13/194 (6%)
Frame = +2
Query: 428 QFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQM--DDRMLDAICERLK 485
Q W ATRGV E+ +L +LP DL+ DI+RHL V+ + F M D+ +L AI ERL
Sbjct: 2 QNSWAATRGVSEKMVLENLPEDLQTDIRRHL-FKFVKNIRFFSLMDEDEPILYAIRERLV 178
Query: 486 PTLCTPGTCIVREGDPVDEMLFIVRGRLDSCTTNGGRTGFFNTCRIGSGDFCGEELLPWA 545
T G+ + +G + +M+FIVRG+++S G+ + GD GEELL W
Sbjct: 179 QTTYIEGSIVFSQGGLIQKMVFIVRGKMESI----GKDEI--PVLLSEGDASGEELLTWY 340
Query: 546 L-------DPRPTAVLP---SSTRTVRAITEVEAFALIAEDLKFVAAQFRR-LHSKQLRQ 594
L D + + +S RT + +T VEAF+L A+D++ V F R L S ++Q
Sbjct: 341 LEQTA*SKDGKKVKIRGRGLTSDRTGKCLTNVEAFSLDAKDIEEVTTLFSRFLRSPHVQQ 520
Query: 595 TFRFYSHQWRTWAA 608
R+ S WR+ AA
Sbjct: 521 VIRYQSPYWRSLAA 562
>TC89327 similar to PIR|T52572|T52572 cyclic nucleotide and
calmodulin-regulated ion channel [imported] -
Arabidopsis thaliana, partial (17%)
Length = 701
Score = 102 bits (254), Expect = 5e-22
Identities = 50/104 (48%), Positives = 74/104 (71%), Gaps = 2/104 (1%)
Frame = +2
Query: 66 SNGRGLSR-VFSEDYDAGEILVFDPRGPRINLWNKIFLAACLISLFVDPLFFYLPVAKKE 124
S G G+S+ VF ED E +FDP+ + LWNK+F+ +C+ S+FVDPLFFYLPV +
Sbjct: 386 SLGLGVSKAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCIFSVFVDPLFFYLPVINDQ 565
Query: 125 -KCIDMSIGLEVSLTIIRTFVDAFYIIHIYIRFQTAYIAPSSRV 167
C+ + L + +T +RT +DAFY++++ ++F+TAYIAPSSRV
Sbjct: 566 LHCLGIDRKLAIIVTTLRTVIDAFYLLNMALQFRTAYIAPSSRV 697
>BE326002 similar to GP|21703138|gb| AT4g30360/F17I23_300 {Arabidopsis
thaliana}, partial (9%)
Length = 623
Score = 57.0 bits (136), Expect(2) = 6e-18
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Frame = +3
Query: 73 RVFSEDYDAGEILVFDPRGPRINLWNKIFLAACLISLFVDPLFFYLPVAK-----KEKCI 127
+VF E+++ + DP + WN++F+ +CL++LFVDPL+FYLP+ + C+
Sbjct: 306 KVFPEEHEPWRKRILDPGSQIVLKWNRLFIVSCLLALFVDPLYFYLPIVQTTQRPSSSCL 485
Query: 128 DMSIGLEVSLT 138
+ L++ +T
Sbjct: 486 KTDLTLQIIVT 518
Score = 52.4 bits (124), Expect(2) = 6e-18
Identities = 21/33 (63%), Positives = 28/33 (84%)
Frame = +1
Query: 140 IRTFVDAFYIIHIYIRFQTAYIAPSSRVSGRGE 172
+RT D FY++H+ I+F+TAY+APSSRV GRGE
Sbjct: 523 LRTIADVFYLLHLIIKFRTAYVAPSSRVFGRGE 621
>TC91950 similar to PIR|T51354|T51354 cyclic nucleotide-regulated ion
channel 1 [validated] - Arabidopsis thaliana, partial
(15%)
Length = 656
Score = 88.2 bits (217), Expect = 1e-17
Identities = 54/133 (40%), Positives = 76/133 (56%), Gaps = 1/133 (0%)
Frame = +1
Query: 568 EAFALIAEDLKFVAAQFRRL-HSKQLRQTFRFYSHQWRTWAACFIQAAWFRYKRMKETNE 626
EAFAL A+DLKFVA+QFRRL +SKQL++TFR YS QW+TW ACFIQAAW RY + K
Sbjct: 1 EAFALKADDLKFVASQFRRLINSKQLQRTFRSYSPQWKTWGACFIQAAWRRYCKKKIERT 180
Query: 627 VKEKENLMMMSNVKYYGNDDSQYFSAPLQVPKGSSYSMYSGKLVGSLRRGRSMRYGSELD 686
++E E+ + + N++ S + S ++ ++ +LR +
Sbjct: 181 LREAEDKLQDA----LANEEGSTISLGATI----YASRFAANVLKNLRENNRQNRMPQRL 336
Query: 687 MLGTLRKPIEPDF 699
+ KP EPDF
Sbjct: 337 LPLLPPKPAEPDF 375
>TC90335 similar to PIR|T07651|T07651 potassium channel protein SKT1 -
potato, partial (49%)
Length = 1353
Score = 75.5 bits (184), Expect = 7e-14
Identities = 49/206 (23%), Positives = 92/206 (43%), Gaps = 1/206 (0%)
Frame = +1
Query: 335 TKYYYCLWWGLRNLSSSGENLLTSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQSTTI 394
T+Y ++W + L++ G L + E+ F + + L L A LIGNM + T
Sbjct: 112 TRYVTTIYWSITTLTTVGYGDLHPVNEREMIFVIFYMLFNLGLTAYLIGNMTNLVVHGTS 291
Query: 395 RLEEWRIRRTDTERWMHHRQLPHYLKENVRRHDQFRW-VATRGVDEEAILRDLPVDLRRD 453
R ++R + H QLP L++ + H ++ + G+ ++ L LP +R
Sbjct: 292 RTRKFRDTIQAASSFAHRNQLPPRLQDQMLAHLCLKFRTDSEGLQQQETLESLPKAIRSS 471
Query: 454 IKRHLCLNLVRQVPLFDQMDDRMLDAICERLKPTLCTPGTCIVREGDPVDEMLFIVRGRL 513
I +L +L+ +V LF + + +L + +KP P ++ + + + +V G +
Sbjct: 472 ISHYLFYSLMDKVYLFKGVSNDLLFQLVSEMKPEYFPPKEDVILQNEAPTDFYILVTGAV 651
Query: 514 DSCTTNGGRTGFFNTCRIGSGDFCGE 539
D GG + +G+ CGE
Sbjct: 652 DLVVLKGGVEQIVGEAK--TGELCGE 723
>TC88080 similar to GP|6562375|emb|CAB62555.1 potassium channel {Daucus
carota}, partial (68%)
Length = 1922
Score = 72.0 bits (175), Expect = 7e-13
Identities = 99/462 (21%), Positives = 169/462 (36%), Gaps = 8/462 (1%)
Frame = +3
Query: 86 VFDPRGPRINLWNKIFLAACLISLFVDPLFFYLPVAKKEKCIDMSIGLEVSLTIIRTFVD 145
V P R LW + + S + P +A +E MSIG S+ I VD
Sbjct: 114 VIAPYDRRYRLWQTFLVVLVVYSAWASPF----ELAFRE----MSIG---SMLIADLVVD 260
Query: 146 AFYIIHIYIRFQTAYIAPSSRVSGRGELIIDSSKIASNYMKKELWSDLVAALPLPQACSS 205
AF+ I + F AY+ S+ L+ D KIA Y+K
Sbjct: 261 AFFAFDIILTFFVAYLDKSTYF-----LVDDHKKIAIRYVKH------------------ 371
Query: 206 PGVHFPVPIEAVSYLSSII*DNQGKWSNDGKSLGWCSLLFDTLYAC*S*STWYLLSIERQ 265
+ FP+ + + I GK + G+ G+ ++L W L +
Sbjct: 372 --LFFPMDLASTLPFQQIYQLIAGKSHDRGEVFGFLNML----------RLWRLRRVSEL 515
Query: 266 DECWKKACTLQYPHCQYHYLDCQSLSDPNRNA----WL----KSSNLSGLCDQNSHFFQF 317
+K + Y + L C +L + WL KS + + Q F
Sbjct: 516 FSRLEKDIRVSYSVTRVCKLLCVTLFAVHFTGCVYFWLAFHHKSPGNTWIGKQVEDFKHR 695
Query: 318 GIFDDAVTLEITSSNFLTKYYYCLWWGLRNLSSSGENLLTSTHVAEINFAVIVAILGLVL 377
+ Y Y ++W + L++ G L + + E F + + + L
Sbjct: 696 SVGSG--------------YTYSMYWSIVTLTTVGYGDLHAENTTEKVFNIFYMLFNIGL 833
Query: 378 FALLIGNMQTYLQSTTIRLEEWRIRRTDTERWMHHRQLPHYLKENVRRHDQFRWVATRGV 437
A +IGNM + +++R R ++ LP LK+ + H Q ++ T +
Sbjct: 834 TAYIIGNMTNLVVHSSVRTFAMRDAFNKILQYASKNGLPEGLKDQMLAHTQLKF-KTAEL 1010
Query: 438 DEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAICERLKPTLCTPGTCIVR 497
+E +L+DLP +R I +HL N+V + LF + D + + +K I+
Sbjct: 1011QQEEVLQDLPKAIRAGIAQHLFHNVVEKTNLFKGVSDDFISQMVSDMKAEYYPSKVDIIL 1190
Query: 498 EGDPVDEMLFIVRGRLDSCTTNGGRTGFFNTCRIGSGDFCGE 539
+ + +V G +D G F ++ G GE
Sbjct: 1191QNEMPAYFYILVSGSVDVLILKNGSEQFL--FKLDPGSMVGE 1310
>AJ547908 weakly similar to GP|9294159|dbj| cyclic nucleotide and
calmodulin-regulated ion channel protein-like
{Arabidopsis thaliana}, partial (12%)
Length = 523
Score = 66.6 bits (161), Expect = 3e-11
Identities = 44/126 (34%), Positives = 65/126 (50%), Gaps = 12/126 (9%)
Frame = -1
Query: 522 RTGFFNTCRIGSGDFCGEELLPWALDPRPTAVLP----------SSTRTVRAITEVEAFA 571
R G+ + + GD CGEELL W L+ + +S RTVR +T VEAF+
Sbjct: 502 RRGWNSRFPLSEGDACGEELLRWYLEQSSESKEGKKIKLHGQGLTSDRTVRCLTNVEAFS 323
Query: 572 LIAEDLKFVAAQFRR-LHSKQLRQTFRFYSHQWRTWAACFIQAAW-FRYKRMKETNEVKE 629
L A+D++ V + R L S ++R R+ S WR+ AA I+ AW +R KR+ N +
Sbjct: 322 LRAKDIEEVTTLYARFLRSPRVRGVIRYESTYWRSLAANRIRVAWRYRKKRLSRANTTQN 143
Query: 630 KENLMM 635
+M
Sbjct: 142 DYQTLM 125
>AW688130 similar to PIR|G84682|G846 hypothetical protein At2g28260
[imported] - Arabidopsis thaliana, partial (6%)
Length = 549
Score = 64.3 bits (155), Expect(2) = 1e-10
Identities = 41/96 (42%), Positives = 51/96 (52%), Gaps = 6/96 (6%)
Frame = +3
Query: 23 SIRFHDDLEKEKLQEGE----ESHMEMRAYEMSSEYKHGKDAINKPSSNGRGLSRVFSED 78
S RF DD E K+ + H++ S K K+ R LSRVFSED
Sbjct: 240 SERFEDDPEISKIPTTSGVKVKYHIDGTQIPEQSSKKSRKNETRNKFLKTRVLSRVFSED 419
Query: 79 YDAGE--ILVFDPRGPRINLWNKIFLAACLISLFVD 112
Y+ + +LV DP G I+ WNKIFL ACL+SLFVD
Sbjct: 420 YERVKKRVLVLDPXGQLIHRWNKIFLVACLVSLFVD 527
Score = 20.4 bits (41), Expect(2) = 1e-10
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 113 PLFFYLP 119
PLFFYLP
Sbjct: 529 PLFFYLP 549
>BG451461 weakly similar to GP|8131898|gb|A cyclic nucleotide-binding
transporter 1 {Arabidopsis thaliana}, partial (6%)
Length = 671
Score = 62.8 bits (151), Expect = 4e-10
Identities = 40/125 (32%), Positives = 68/125 (54%)
Frame = +2
Query: 345 LRNLSSSGENLLTSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQSTTIRLEEWRIRRT 404
L+ + + N S ++ E+ F + + LGL+L LIGN+Q++L++ + R E R
Sbjct: 311 LQQIITLAGNQTPSYYLWEVLFTMSIMALGLLL---LIGNIQSFLRTLSKRSLEMMHRGC 481
Query: 405 DTERWMHHRQLPHYLKENVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVR 464
D E+WM+H +LP L+ V Q W + E L +LP +L+ DI+R++ N V+
Sbjct: 482 DVEQWMNHHRLPEDLRMRVL---QAEWNSRHNAPERTXLENLPENLQIDIRRYI-FNFVK 649
Query: 465 QVPLF 469
+ F
Sbjct: 650 KFXFF 664
>BE326167 similar to GP|20268758|gb| putative cyclic nucleotide and
calmodulin-regulated ion channel {Arabidopsis thaliana},
partial (13%)
Length = 510
Score = 55.5 bits (132), Expect = 7e-08
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Frame = +1
Query: 257 WYLLSIERQDECWKKACTLQYPHCQYHYLDCQSLSDPNRNAWLKSSN--LSGLC--DQNS 312
WYLL+IER D CW+ AC+ C +YL C++ +AW S C D +
Sbjct: 238 WYLLAIERNDSCWQNACSDN--GCNKNYLYCENQHTEGYSAWQNKSKAIFKSKCSVDDDP 411
Query: 313 HFFQFGIFDDAVTL--EITSSNFLTKYYYCLW 342
F +GIF ++ + F+TKY Y LW
Sbjct: 412 PPFDYGIF*ASLVIWYHFHLRRFITKYLYWLW 507
>BF638007 similar to GP|22136698|gb| putative cyclic nucleotide and
calmodulin-regulated ion channel protein {Arabidopsis
thaliana}, partial (26%)
Length = 636
Score = 55.1 bits (131), Expect = 9e-08
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Frame = -2
Query: 101 FLAACLISLFVDPLFFY-LPVAKKEKCIDMSIGLEVSLTIIRTFVDAFYIIHIYIRFQTA 159
FL C LFVDPLFFY L ++ C+ + V++T++R DA + +I++RF+TA
Sbjct: 554 FLLVCAAGLFVDPLFFYALSISDSCMCLFIDGWFAVTVTVLRCMTDALHFWNIFLRFKTA 375
Query: 160 ------YIAPSSRVSGRGELIIDSSKIASNYMK--KELWSDLVAALPLPQ 201
+ + S+ GR +A Y+K + + DL LP+PQ
Sbjct: 374 KRSSLTFASHSATADGR-------RLVALAYLKSRRGFFFDLFVILPIPQ 246
>AL381557 similar to GP|9294159|dbj| cyclic nucleotide and
calmodulin-regulated ion channel protein-like
{Arabidopsis thaliana}, partial (10%)
Length = 524
Score = 48.9 bits (115), Expect = 7e-06
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +2
Query: 557 STRTVRAITEVEAFALIAEDLKFVAAQFRR-LHSKQLRQTFRFYSHQWRTWAACFIQAAW 615
S RTV +T VEAF+L A DL+ V + F R L S ++ R+ S WR AA IQ AW
Sbjct: 23 SNRTVLCLTNVEAFSLRAADLEEVTSLFARFLRSPGVQGAIRYESPYWRCLAATRIQVAW 202
Query: 616 -FRYKRM 621
+R KR+
Sbjct: 203 RYRKKRL 223
>BE325461 weakly similar to GP|9294159|dbj| cyclic nucleotide and
calmodulin-regulated ion channel protein-like
{Arabidopsis thaliana}, partial (9%)
Length = 265
Score = 47.4 bits (111), Expect = 2e-05
Identities = 24/53 (45%), Positives = 33/53 (61%)
Frame = +2
Query: 363 EINFAVIVAILGLVLFALLIGNMQTYLQSTTIRLEEWRIRRTDTERWMHHRQL 415
EI F + + +LGL+ A LIG +QT QS R E ++R D E+WM HR+L
Sbjct: 107 EILFTMSIMVLGLLYLAHLIGTIQTCNQSLAQRKVEMQLRGRDVEQWMSHRRL 265
>TC93638 similar to GP|9294159|dbj|BAB02061.1 cyclic nucleotide and
calmodulin-regulated ion channel protein-like
{Arabidopsis thaliana}, partial (5%)
Length = 819
Score = 38.9 bits (89), Expect = 0.007
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 86 VFDPRGPRINLWNKIFLAACLISLFVDPLF 115
V +P ++ WNK F CL+++FVDPLF
Sbjct: 714 VINPHNKLVHQWNKFFAICCLVAIFVDPLF 803
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.326 0.140 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,749,123
Number of Sequences: 36976
Number of extensions: 395422
Number of successful extensions: 2782
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 2735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2768
length of query: 703
length of database: 9,014,727
effective HSP length: 103
effective length of query: 600
effective length of database: 5,206,199
effective search space: 3123719400
effective search space used: 3123719400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Medicago: description of AC140028.7