BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140025.16 - phase: 0
(801 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB065285 weakly similar to PIR|A84500|A84 probable retroelement ... 398 e-111
AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis... 295 5e-80
BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana... 112 4e-25
BG586308 weakly similar to PIR|F84528|F8 probable retroelement p... 60 3e-18
TC77595 weakly similar to PIR|T18350|T18350 probable pol polypro... 78 2e-14
BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - ... 75 1e-13
BG587127 weakly similar to PIR|H84506|H84 probable retroelement ... 63 4e-10
BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis t... 49 6e-06
TC83629 weakly similar to GP|6692261|gb|AAF24611.1| putative RNa... 47 2e-05
CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product ... 47 2e-05
TC92306 46 5e-05
BG586326 similar to PIR|G84493|G8 probable retroelement pol poly... 45 1e-04
BG454871 weakly similar to GP|10140673|g putative gag-pol polypr... 40 0.004
BG644720 39 0.008
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 38 0.017
BG647160 homologue to GP|15004435|gb| maturase {Ionopsis satyrio... 37 0.039
CB892255 36 0.051
TC86742 similar to PIR|T01541|T01541 hypothetical protein A_IG00... 35 0.11
TC83398 similar to PIR|T05150|T05150 hypothetical protein F18E5.... 33 0.43
TC77920 similar to GP|15809948|gb|AAL06901.1 AT3g10210/F14P13_19... 30 2.8
>CB065285 weakly similar to PIR|A84500|A84 probable retroelement gag/pol
polyprotein [imported] - Arabidopsis thaliana, partial
(2%)
Length = 592
Score = 398 bits (1022), Expect = e-111
Identities = 190/197 (96%), Positives = 193/197 (97%)
Frame = -2
Query: 200 KSKDCEEPLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSLQGHHIPFTARILFECTNN 259
KSKDCEEPLI EGPDPNSKWGLVFDGAVNAYGKGIGAVIVS QGH+IPFTARILFECTNN
Sbjct: 591 KSKDCEEPLIGEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHYIPFTARILFECTNN 412
Query: 260 MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYF 319
MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHA LIPYRDYARRLLTYF
Sbjct: 411 MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYF 232
Query: 320 TKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGE 379
TKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIG+VIDQ GE
Sbjct: 231 TKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGNVIDQTGE 52
Query: 380 NVVDYKPWYYDIKQFLL 396
NVVDYKPWYYDIKQFL+
Sbjct: 51 NVVDYKPWYYDIKQFLV 1
>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
chromosome II BAC F26H6; putative retroelement pol
polyprotein, partial (1%)
Length = 636
Score = 295 bits (755), Expect = 5e-80
Identities = 131/167 (78%), Positives = 154/167 (91%)
Frame = -2
Query: 104 KTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVTGKIARWQMLLSEYDIVFKA 163
KTCCALAWAAKRLRHY++NHTTWL+S+MDPIKYIFEK +TG+IARWQMLLSEYDI +++
Sbjct: 635 KTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRS 456
Query: 164 QKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLIDEGPDPNSKWGLVF 223
QKAIKGSILADHLA+QPL+DY+PI+FDFPDEEIMYLK KDC+EPL EGPDP+S WGL+F
Sbjct: 455 QKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIF 276
Query: 224 DGAVNAYGKGIGAVIVSLQGHHIPFTARILFECTNNMAEYEACIFGI 270
DGAVN YG GIGAV+++ +G HIPFTAR+ F+CTNN+AEYEACI GI
Sbjct: 275 DGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEACIMGI 135
Score = 48.1 bits (113), Expect = 1e-05
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +2
Query: 70 CVLGQQDETGKKEHAIYYLSKKFT 93
CVLGQQDETG+KEHAIYYLS+K +
Sbjct: 38 CVLGQQDETGRKEHAIYYLSRKLS 109
>BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana}, partial
(10%)
Length = 624
Score = 112 bits (281), Expect = 4e-25
Identities = 63/196 (32%), Positives = 96/196 (48%)
Frame = +2
Query: 418 RFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWM 477
R+L D LYK+ D + +RCV E E ++ H + H K+ +AG++W
Sbjct: 17 RYLWDEPFLYKQCADNIYIRCVAEEEIPGILFHCHGSNYAGHFAVSKTVSKIQQAGFWWP 196
Query: 478 AMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRF 537
M D + KC CQ + N I F +WGID +G +N ++
Sbjct: 197 TMFKDAHSFISKCDPCQRQGNIS*RNEMPQNFILEVEVFDVWGIDFMGPFPSSYNN--KY 370
Query: 538 ILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALC 597
ILVA+DY +KWVEA + VV K K+ I R+GVP +I+D G++ N V + L
Sbjct: 371 ILVAVDYVSKWVEAIASPTNDATVVVKMFKSVIFPRFGVPRVVISDGGSHFINKVFEKLL 550
Query: 598 EEFKIEHHNSSPYRPQ 613
++ + H ++ Y PQ
Sbjct: 551 KKNGVRHKVATAYHPQ 598
>BG586308 weakly similar to PIR|F84528|F8 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 686
Score = 60.1 bits (144), Expect(2) = 3e-18
Identities = 39/122 (31%), Positives = 68/122 (54%), Gaps = 4/122 (3%)
Frame = -3
Query: 647 LHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL---RVIMEAKLSEAEWCQSRYDQL 703
L +RT R +T +TPFS+ + +EA+ P EV + SL R+ +L+ ++ L
Sbjct: 462 LWSHRTNPRGATKSTPFSMAHRVEAMAPAEVNVTSL*RSRMPQNIELNN----DRLFNAL 295
Query: 704 NLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRVSQQPD-PRGKWTPNY 762
IEE+R A+ R Q+YQ ++++ ++K V + K+G++VL + + GK N+
Sbjct: 294 ETIEERRDQALLRIQNYQHQIESYYNKTVKSQPLKLGDIVLCKVFENTKELNAGKLGTNW 115
Query: 763 EG 764
EG
Sbjct: 114 EG 109
Score = 50.4 bits (119), Expect(2) = 3e-18
Identities = 22/52 (42%), Positives = 35/52 (67%)
Frame = -2
Query: 574 YGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI 625
+G+P +I+TDNG++ +N + CE ++I + +SP PQ NG EA+NK I
Sbjct: 685 HGLPYEIVTDNGSHFISNKFREFCERWRIRLNTASPRYPQSNGQAEASNKII 530
>TC77595 weakly similar to PIR|T18350|T18350 probable pol polyprotein - rice
blast fungus gypsy retroelement (fragment), partial
(14%)
Length = 1708
Score = 77.8 bits (190), Expect = 2e-14
Identities = 75/353 (21%), Positives = 140/353 (39%), Gaps = 15/353 (4%)
Frame = +2
Query: 446 QLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIHVPPH 505
+L+ + HD T H G + +++ ++W + R C C IH+
Sbjct: 176 KLVQESHDSTAAGHP-GRNGTLEIVSRKFFWPGQSQTVRRFVRNCDVC----GGIHIWRQ 340
Query: 506 ALNVISSPWPF-----SMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQ 560
A P P S +D I + P G +++ V +D +K V + +
Sbjct: 341 AKRGFLKPLPVPNRLHSDLSMDFITSLPPTRGRGSQYLWVIVDRLSKSVTLEEMDTMEAE 520
Query: 561 VVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEA 620
A+ + +G+P I++D G+N + C + S+ Y PQ +G E
Sbjct: 521 ACAQRFLSCHYRFHGMPQSIVSDRGSNWVGRFWREFCRLTGVTQLLSTSYHPQTDGGTER 700
Query: 621 ANKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEI 679
N+ I+ +++ V +D W ++LP R SS GATPF + +G V P+
Sbjct: 701 WNQEIQAVLRAYVCWSQDNWGDLLPTVQLALRNRHNSSIGATPFFVEHGYH-VDPIPTVE 877
Query: 680 PSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKV 739
+ V+ E + + + D I+ + + A R ++ + + D+ ++V
Sbjct: 878 DTGGVVSEGEAAAQLLVKRMKDVTGFIQAEIVAAQQRSEASANKRRCPADR------YQV 1039
Query: 740 GELV---LKRRVSQQPDPRGKW------TPNYEGPYVVKKAFSGGALILTHMD 783
G+ V + S +P + W + P+VV+ G H+D
Sbjct: 1040GDKVWLNVSNYKSPRPSKKLDWLHHKYEVTRFVTPHVVELNVPGTVYPKFHVD 1198
>BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - Arabidopsis
thaliana, partial (13%)
Length = 763
Score = 75.1 bits (183), Expect = 1e-13
Identities = 38/97 (39%), Positives = 59/97 (60%)
Frame = +3
Query: 19 LSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQQDET 78
L N+ VW+++C+EAF+ +K YL PP+L P G L LY+++ +V VL ++D
Sbjct: 477 LCGNKRFVWDEKCEEAFEQLKQYLTTPPVLSKPEAGDTLSLYIAISSTAVSSVLIREDRG 656
Query: 79 GKKEHAIYYLSKKFTDCETRYTMLAKTCCALAWAAKR 115
+K I+Y SK+ TD ETRY L K A+ +A++
Sbjct: 657 EQK--PIFYTSKRMTDPETRYPTLEKMAFAVITSARK 761
>BG587127 weakly similar to PIR|H84506|H84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(13%)
Length = 415
Score = 63.2 bits (152), Expect = 4e-10
Identities = 35/93 (37%), Positives = 49/93 (52%)
Frame = +3
Query: 251 RILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRD 310
R+ F +NN YEA I G+ A ++I+++ Y DS LV +Q GE+E + Y
Sbjct: 51 RLEFHASNNETNYEALIAGVRLAHGLKIRNIHAYCDSQLVASQFSGEYEARDELMDTYLK 230
Query: 311 YARRLLTYFTKVELHHIPRDENQMADALATLSS 343
++L L IPR EN ADALA L+S
Sbjct: 231 LVQKLAQKLDYFALTRIPRSENVQADALAALAS 329
>BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana},
partial (6%)
Length = 469
Score = 49.3 bits (116), Expect = 6e-06
Identities = 35/101 (34%), Positives = 52/101 (50%), Gaps = 3/101 (2%)
Frame = +1
Query: 702 QLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVL--KRRVSQQPDPRGKWT 759
+LN +EE R+DA + Y+ R K D+++ REF+ GELVL R+ P GK
Sbjct: 103 ELNELEELRLDAYENAKIYKERTKKWHDRRIIRREFREGELVLLFNSRLKLFP---GKLR 273
Query: 760 PNYEGPYVVKKAFSGGAL-ILTHMDGVELPNPVNADIVKKY 799
++ GP+ VK GA+ + + G P VN +K Y
Sbjct: 274 SHWSGPFQVKNVMPSGAVEVWSESTG---PFTVNGQRLKHY 387
>TC83629 weakly similar to GP|6692261|gb|AAF24611.1| putative RNase H
{Arabidopsis thaliana}, partial (21%)
Length = 1071
Score = 47.4 bits (111), Expect = 2e-05
Identities = 34/113 (30%), Positives = 50/113 (44%)
Frame = +2
Query: 220 GLVFDGAVNAYGKGIGAVIVSLQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIK 279
G V+ +N G GA++++ G + + L T AEY A + G++ A K
Sbjct: 563 G*VW*SNINRGPAGAGALLLAEDGSLLYGFRQGLGHQTKESAEYRALLLGLKHASMKGFK 742
Query: 280 HLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDEN 332
++ GDS LVINQI W+ L A L F + HI R+ N
Sbjct: 743 YVTAKGDSELVINQILDPWKIKDEHLKKLCAEALELSDNFHSFRIQHISRERN 901
>CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product {Drosophila
melanogaster}, partial (20%)
Length = 192
Score = 47.4 bits (111), Expect = 2e-05
Identities = 23/56 (41%), Positives = 30/56 (53%)
Frame = +1
Query: 65 DESVGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLAKTCCALAWAAKRLRHYL 120
D +G L Q+DE EH I Y S+ T E YT++ + C A WA + RHYL
Sbjct: 7 DWGIGAGLSQKDEENH-EHPIAYASRLLTAAERNYTVVERECLAAIWAIRNFRHYL 171
>TC92306
Length = 521
Score = 46.2 bits (108), Expect = 5e-05
Identities = 24/73 (32%), Positives = 36/73 (48%)
Frame = +2
Query: 267 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 326
I G+ EA + +H+ + GD V Q G W+ ++ L + A L + F V + H
Sbjct: 2 ILGLNEARNQGYEHVHVRGDFQXVCKQFXGSWKVNNPNLRNLCNXAVELKSNFKSVSVEH 181
Query: 327 IPRDENQMADALA 339
+PR N ADA A
Sbjct: 182 VPRGXNXAADAQA 220
>BG586326 similar to PIR|G84493|G8 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 736
Score = 45.1 bits (105), Expect = 1e-04
Identities = 44/158 (27%), Positives = 68/158 (42%), Gaps = 3/158 (1%)
Frame = +2
Query: 46 PILVPPVEGRPLILYLSVFDESV---GCVLGQQDETGKKEHAIYYLSKKFTDCETRYTML 102
PILV P LI Y+ D S+ GCVL Q E I Y S++ E Y
Sbjct: 17 PILVLP----ELITYVVYTDASITGLGCVLTQH------EKVIAYASRQLRKHEGNYPTH 166
Query: 103 AKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVTGKIARWQMLLSEYDIVFK 162
A+ +A K R YL + + +KYIF + + + RW +++YD+
Sbjct: 167 DLEMAAVVFALKIWRSYLYGAKVQIHTDHKSLKYIFTQPELNLRQRRWMEFVADYDLDIT 346
Query: 163 AQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLK 200
K +++AD L+ + +D E D D + L+
Sbjct: 347 YYPG-KANLVADALSRRRVDVSAEREADDLDGMVRALR 457
>BG454871 weakly similar to GP|10140673|g putative gag-pol polyprotein {Oryza
sativa (japonica cultivar-group)}, partial (7%)
Length = 674
Score = 40.0 bits (92), Expect = 0.004
Identities = 22/65 (33%), Positives = 32/65 (48%), Gaps = 1/65 (1%)
Frame = +2
Query: 607 SSPYRPQMNGAVEAANKNIKRIVQ-KMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSL 665
SS Y P +G EA NK + ++ M T W + P+A + Y T+ S TPF
Sbjct: 83 SSAYHP*SDGQSEALNKGXEMYLRCLMFTDPLKWSKAFPWAEYWYNTSYNISAAMTPFKA 262
Query: 666 VYGME 670
+YG +
Sbjct: 263 LYGRD 277
>BG644720
Length = 678
Score = 38.9 bits (89), Expect = 0.008
Identities = 31/112 (27%), Positives = 49/112 (43%)
Frame = -3
Query: 424 DILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDC 483
+ LY ++ VLL C+ E E Q H G+H + + + R GYYW
Sbjct: 358 ETLYI*LFEGVLL*CLGEEETIQAFQ*AHSRVCGSHKS--KLYFHIKRMGYYW------- 206
Query: 484 YQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGH 535
+ K + A+ I PP L+ + F W +++ G + PK+S GH
Sbjct: 205 --NT*IMLKGALLANFIQQPPEVLHPTITS*LFESWELNVFG-LFPKSSGGH 59
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 37.7 bits (86), Expect = 0.017
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Frame = -3
Query: 533 NGHRFILVAIDYFTKWVEAASYTNVTKQVVA-KFIKNNIICRYGVPSKII-TDNGTNLNN 590
+ H++ + ID +K+ + + + A K + + Y KI+ +DNG +
Sbjct: 383 DNHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTS 204
Query: 591 NVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMV 633
++ + I H S PY PQ NG + NK++ + + ++
Sbjct: 203 YAFKSHLDHHGILHQTSCPYTPQQNGVAKRKNKHLMEVARSLM 75
>BG647160 homologue to GP|15004435|gb| maturase {Ionopsis satyrioides},
partial (2%)
Length = 780
Score = 36.6 bits (83), Expect = 0.039
Identities = 21/69 (30%), Positives = 32/69 (45%)
Frame = +1
Query: 273 AIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDEN 332
AI + I+ + Y DS L +N IK + HH + + + + LHH R+ N
Sbjct: 496 AISLNIEEMVCYSDSLLTVNLIKEDISQHHVYAVLIHNI--KYIMSSRNFTLHHTLREGN 669
Query: 333 QMADALATL 341
Q AD + L
Sbjct: 670 QCADFMVKL 696
>CB892255
Length = 853
Score = 36.2 bits (82), Expect = 0.051
Identities = 28/98 (28%), Positives = 46/98 (46%)
Frame = +1
Query: 666 VYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMK 725
V+ ++A+ ++V++ S+ V +AK+ C R ++RG S +
Sbjct: 31 VFNVKALCHMKVKVLSMEVPKKAKID*T*KCYCRVP---------WTVISRG*SKYST-- 177
Query: 726 TAFDKKVHPREFKVGELVLKRRVSQQPDPRGKWTPNYE 763
KK PRE + VLK + P+ RGKW PNY+
Sbjct: 178 ----KKARPRECQESGFVLKNML---PNSRGKWMPNYK 270
>TC86742 similar to PIR|T01541|T01541 hypothetical protein A_IG005I10.16 -
Arabidopsis thaliana, partial (19%)
Length = 2073
Score = 35.0 bits (79), Expect = 0.11
Identities = 29/101 (28%), Positives = 49/101 (47%), Gaps = 7/101 (6%)
Frame = -1
Query: 261 AEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYAR--RLLTY 318
AE+ AC+ IE+A+++ + ++ + DS V+N H IP++ R + +
Sbjct: 396 AEFCACMIAIEKAMELGLNNICLETDSLKVVNAF------HKIVGIPWQMRVRWHNCIRF 235
Query: 319 FTKVE--LHHIPRDENQMADALATLS---SMFRVNHWNDVP 354
+ HIPR+ N +ADALA S+F + W P
Sbjct: 234 CHSIACVCVHIPREGNLVADALARHGQGLSLFFLQWWPAPP 112
>TC83398 similar to PIR|T05150|T05150 hypothetical protein F18E5.40 -
Arabidopsis thaliana, partial (6%)
Length = 766
Score = 33.1 bits (74), Expect = 0.43
Identities = 28/99 (28%), Positives = 43/99 (43%)
Frame = +2
Query: 245 HIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAK 304
HI + ILF AE A + G++ A + I + Y DS +N I G +HA
Sbjct: 116 HIDHSNDILF------AELHAILMGLQLAQTLNIVDVVCYSDSLHYVNLINGPSVVYHAY 277
Query: 305 LIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSS 343
+D + ++ H R+ N+ AD LA L +
Sbjct: 278 ATLIQD-----IKDLIRLSKLHTLREGNRCADFLAKLGA 379
>TC77920 similar to GP|15809948|gb|AAL06901.1 AT3g10210/F14P13_19
{Arabidopsis thaliana}, partial (78%)
Length = 1156
Score = 30.4 bits (67), Expect = 2.8
Identities = 11/29 (37%), Positives = 17/29 (57%)
Frame = -2
Query: 42 LLEPPILVPPVEGRPLILYLSVFDESVGC 70
+L PP+ +PP+ P +L+ SV GC
Sbjct: 117 MLRPPLRIPPMNSSPPLLFFSVIPVQRGC 31
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.322 0.137 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,178,929
Number of Sequences: 36976
Number of extensions: 389638
Number of successful extensions: 1954
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1950
length of query: 801
length of database: 9,014,727
effective HSP length: 104
effective length of query: 697
effective length of database: 5,169,223
effective search space: 3602948431
effective search space used: 3602948431
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Medicago: description of AC140025.16