TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140025.11 + phase: 0 
         (217 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC86959 similar to GP|18086573|gb|AAL57710.1 AT5g15260/F8M21_150...   431  e-122
BF637790 similar to GP|18086573|gb| AT5g15260/F8M21_150 {Arabido...   173  4e-44
TC93097 weakly similar to GP|6714471|gb|AAF26157.1| unknown prot...    82  2e-22
TC92436 similar to GP|6862922|gb|AAF30311.1| unknown protein {Ar...    92  2e-19
BE202801 homologue to GP|12322744|gb| hypothetical protein; 7880...    29  1.6
TC77941 weakly similar to GP|9294810|gb|AAF86687.1| MTD1 {Medica...    28  2.7
CA859356 weakly similar to GP|14970589|emb glyxoxylate pathway r...    27  4.6
TC80630 similar to GP|22655010|gb|AAM98096.1 AT3g13690/MMM17_12 ...    27  4.6
TC77340 SP|Q9BAE0|FTSH_MEDSA Cell division protein ftsH homolog ...    27  6.0

>TC86959 similar to GP|18086573|gb|AAL57710.1 AT5g15260/F8M21_150
           {Arabidopsis thaliana}, partial (29%)
          Length = 1380

 Score =  431 bits (1109), Expect = e-122
 Identities = 217/217 (100%), Positives = 217/217 (100%)
 Frame = +2

Query: 1   MVNFHSLISSVDQSSSSMANSIDLAKSRNRKTLNSLQIPQCERSRSAVVDVVIFIAVVIA 60
           MVNFHSLISSVDQSSSSMANSIDLAKSRNRKTLNSLQIPQCERSRSAVVDVVIFIAVVIA
Sbjct: 425 MVNFHSLISSVDQSSSSMANSIDLAKSRNRKTLNSLQIPQCERSRSAVVDVVIFIAVVIA 604

Query: 61  LGFLVFPYIQFVMSESFKLCGLFMDLVKEEVAVAPVIYVSLGVSVSCAVVATWFFIAYTS 120
           LGFLVFPYIQFVMSESFKLCGLFMDLVKEEVAVAPVIYVSLGVSVSCAVVATWFFIAYTS
Sbjct: 605 LGFLVFPYIQFVMSESFKLCGLFMDLVKEEVAVAPVIYVSLGVSVSCAVVATWFFIAYTS 784

Query: 121 RKCSNPNCKGLKNAAEFDIQLETEDCVKNSPSLGKDGGGIKKGLFKIPCDHHRELEAELK 180
           RKCSNPNCKGLKNAAEFDIQLETEDCVKNSPSLGKDGGGIKKGLFKIPCDHHRELEAELK
Sbjct: 785 RKCSNPNCKGLKNAAEFDIQLETEDCVKNSPSLGKDGGGIKKGLFKIPCDHHRELEAELK 964

Query: 181 KMAPVNGRAVLVLRGKCGCSVGRLEVPGPKKNRKIKK 217
           KMAPVNGRAVLVLRGKCGCSVGRLEVPGPKKNRKIKK
Sbjct: 965 KMAPVNGRAVLVLRGKCGCSVGRLEVPGPKKNRKIKK 1075


>BF637790 similar to GP|18086573|gb| AT5g15260/F8M21_150 {Arabidopsis
           thaliana}, partial (35%)
          Length = 604

 Score =  173 bits (439), Expect = 4e-44
 Identities = 85/103 (82%), Positives = 90/103 (86%), Gaps = 1/103 (0%)
 Frame = +3

Query: 116 IAYTSRKCSNPNCKGLKNAAEFDIQLETEDCVKNSPSLGKDGGGIKKGLFKIPCDHHREL 175
           I  TS KC NPNCKGLK AAEFDIQLETEDCVKNSPS  KDGG  KKGLF++P DHH+EL
Sbjct: 15  IVCTSNKCGNPNCKGLKKAAEFDIQLETEDCVKNSPSFVKDGGVCKKGLFELPRDHHKEL 194

Query: 176 EAELKKMAPVNGRAVLVLRGKCGCSVGRLEVPGP-KKNRKIKK 217
           EAELKKMAP+NGRAVLVLR +CGCSVGRLEVPGP KK RKIKK
Sbjct: 195 EAELKKMAPINGRAVLVLRARCGCSVGRLEVPGPAKKLRKIKK 323


>TC93097 weakly similar to GP|6714471|gb|AAF26157.1| unknown protein
           {Arabidopsis thaliana}, partial (6%)
          Length = 740

 Score = 81.6 bits (200), Expect(2) = 2e-22
 Identities = 49/101 (48%), Positives = 64/101 (62%), Gaps = 19/101 (18%)
 Frame = +3

Query: 1   MVNFHSLIS---SVDQS--SSSMANSIDLAKS--------------RNRKTLNSLQIPQC 41
           MV FHS IS   SVDQ    SSMANSI+L                 RN    NS++IP C
Sbjct: 339 MVYFHSSISLCKSVDQPPVQSSMANSIELGSKYSKSKQTNQFQRNRRNHSLSNSVKIPPC 518

Query: 42  ERSRSAVVDVVIFIAVVIALGFLVFPYIQFVMSESFKLCGL 82
           +RSRSA++DVV+FIAVVIA GFL FPY++ ++ +SF++  +
Sbjct: 519 DRSRSAMIDVVMFIAVVIACGFLFFPYVELLVIKSFQIMSM 641



 Score = 40.8 bits (94), Expect(2) = 2e-22
 Identities = 16/28 (57%), Positives = 22/28 (78%)
 Frame = +1

Query: 86  LVKEEVAVAPVIYVSLGVSVSCAVVATW 113
           L+ E V+ AP IY+S+G+SV CA +ATW
Sbjct: 652 LIMERVSYAPYIYISIGISVVCAALATW 735


>TC92436 similar to GP|6862922|gb|AAF30311.1| unknown protein {Arabidopsis
           thaliana}, partial (56%)
          Length = 710

 Score = 92.0 bits (227), Expect = 2e-19
 Identities = 67/215 (31%), Positives = 108/215 (50%), Gaps = 4/215 (1%)
 Frame = +3

Query: 7   LISSVDQSSSSMANSIDLAKSRNRKTLNSLQIPQCERSRSAVVDVVIFIAVVIALGFLVF 66
           L +++  SSSS ++S+       R   N  +I  C+ + SA +D++I + V+ +  FL+ 
Sbjct: 18  LTTAMPSSSSSSSSSL-------RHHCN--KICNCKHAPSATLDLLILLLVLFSGAFLLS 170

Query: 67  PYIQFVMSE-SFKLCGLFMDLVKEEVAVAPVIYVSLGVSVSCAVVATWFFIAYTSRKCSN 125
            YI ++ +  S  L   ++ +      +   I    G  + C            SRKC  
Sbjct: 171 SYILYIFNSLSLLLPSFYLPIPYILAFIIFSIGFVFGFEICCGA---------RSRKCER 323

Query: 126 PNCKGLKNAAEFDIQLETEDCVKNSPSLGKDGGGIKKGLFKIPCDHHRELE---AELKKM 182
             CKGLK A EFD+++E          LG   G  +K  +K   + + + E   +EL+KM
Sbjct: 324 KGCKGLKKATEFDLKIER---------LGLGFGEYEKLPWKGGSEGNPDYECLRSELRKM 476

Query: 183 APVNGRAVLVLRGKCGCSVGRLEVPGPKKNRKIKK 217
           APVNG+A+L+ R  CGC V +LE  GPKK ++ K+
Sbjct: 477 APVNGKALLLFRAPCGCPVAKLEASGPKKGKRQKR 581


>BE202801 homologue to GP|12322744|gb| hypothetical protein; 78804-81924
           {Arabidopsis thaliana}, partial (3%)
          Length = 506

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 162 KGLFKIPCDHHRELEAELKKMAPV-NGRAVLVLRGKC 197
           K + ++PC H+R +E  L+ MA V N R    L  KC
Sbjct: 146 KVVLRLPCIHNRCMETNLQVMATVNNNREFHTLSSKC 256


>TC77941 weakly similar to GP|9294810|gb|AAF86687.1| MTD1 {Medicago
           truncatula}, partial (15%)
          Length = 1059

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 16/48 (33%), Positives = 25/48 (51%), Gaps = 10/48 (20%)
 Frame = +3

Query: 142 ETEDCVKNSPSLGK----------DGGGIKKGLFKIPCDHHRELEAEL 179
           +T+ CV +S SLG+          D   ++K  FK P D  ++LE +L
Sbjct: 225 DTDSCVSSSSSLGRNSDSSEDDSSDREEVEKNSFKGPLDTMKDLEKDL 368


>CA859356 weakly similar to GP|14970589|emb glyxoxylate pathway regulator
           {Yarrowia lipolytica}, partial (22%)
          Length = 747

 Score = 27.3 bits (59), Expect = 4.6
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +3

Query: 113 WFFIAYTSRKCS 124
           WFFIAY+SR CS
Sbjct: 318 WFFIAYSSRYCS 353


>TC80630 similar to GP|22655010|gb|AAM98096.1 AT3g13690/MMM17_12
           {Arabidopsis thaliana}, partial (18%)
          Length = 1044

 Score = 27.3 bits (59), Expect = 4.6
 Identities = 12/32 (37%), Positives = 19/32 (58%)
 Frame = -2

Query: 70  QFVMSESFKLCGLFMDLVKEEVAVAPVIYVSL 101
           QFV      L GLF+D  K E+A+  ++++ L
Sbjct: 212 QFVSPFDLLLFGLFLDFQKYEIAIVSLVFLVL 117


>TC77340 SP|Q9BAE0|FTSH_MEDSA Cell division protein ftsH homolog  chloroplast
            precursor (EC 3.4.24.-). [Alfalfa] {Medicago sativa},
            complete
          Length = 2473

 Score = 26.9 bits (58), Expect = 6.0
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 4    FHSLISSVDQSSSSMANSIDLAKSRNRKTLNSLQIPQCERSRS 46
            F  +IS+   SSS   NSI+L    N + L    + Q   SRS
Sbjct: 1370 FPLIISTTKTSSSLSPNSINLINKHNARCLRLRLLKQIPNSRS 1242


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,958,373
Number of Sequences: 36976
Number of extensions: 90606
Number of successful extensions: 466
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of query: 217
length of database: 9,014,727
effective HSP length: 92
effective length of query: 125
effective length of database: 5,612,935
effective search space: 701616875
effective search space used: 701616875
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)