TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139854.8 - phase: 0 
         (304 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF633515                                                              151  3e-37
TC83089                                                               146  1e-35
BG453710 weakly similar to GP|21537057|gb| unknown {Arabidopsis ...    74  8e-22
BE943429                                                               85  3e-17
TC82474                                                                70  1e-12
BG454068 weakly similar to GP|22202804|dbj hypothetical protein~...    68  4e-12
BG646599                                                               67  7e-12
AW693426 homologue to GP|23307580|dbj similar to serine/threonin...    44  1e-04
TC77808 similar to PIR|T03843|T03843 prohibitin - common tobacco...    30  1.5
TC80565 weakly similar to GP|14335072|gb|AAK59800.1 AT5g20050/F2...    28  5.7
TC91460 similar to GP|19698839|gb|AAL91155.1 cytochrome P450 {Ar...    27  7.5
TC81072 similar to PIR|T05401|T05401 hypothetical protein F10M6....    27  7.5

>BF633515 
          Length = 249

 Score =  151 bits (381), Expect = 3e-37
 Identities = 71/82 (86%), Positives = 75/82 (90%)
 Frame = +2

Query: 10 LDDVACLTHLPIEGRMLDHGKKMPKHEGAAQLMTYLGVSQHEAEKICNQKYGGYISYPRL 69
          LDDVACLTHLPIEGRML HGKKMPKHEGAA LM +LGVSQ EAEKIC Q+YGGYISYPRL
Sbjct: 2  LDDVACLTHLPIEGRMLSHGKKMPKHEGAALLMRHLGVSQQEAEKICGQEYGGYISYPRL 181

Query: 70 RDFYTSYLGRANVLAGTEDPEE 91
          RDFYT+YLGRAN+LA TEDP E
Sbjct: 182RDFYTTYLGRANLLASTEDPVE 247


>TC83089 
          Length = 887

 Score =  146 bits (368), Expect = 1e-35
 Identities = 72/116 (62%), Positives = 88/116 (75%), Gaps = 1/116 (0%)
 Frame = +3

Query: 69  LRDFYTSYLGRANVLAGTEDPEELEELARVRTYCVRCYLLYLVGCLLFGDRSNKRIELIY 128
           LR++Y  YL  A  L+  ++  + +EL ++RT CV+ YLLYLVGCLLFGD+SNKRIEL+Y
Sbjct: 264 LREYYEGYLDSATRLSDPQNLGDPQELEKIRTTCVKWYLLYLVGCLLFGDKSNKRIELVY 443

Query: 129 LTTMADGYAGMRNYSWGGMTLAYLYGELADACRPGHRALGGSVTLLTT-WFLAHFP 183
           LTTM DGYAGMRN+SWGGMTLAYLY  L++   PG  AL  SVTL+T  WFL H P
Sbjct: 444 LTTMEDGYAGMRNHSWGGMTLAYLYHCLSEVSLPGGGALERSVTLVTAGWFLCHLP 611



 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 20/42 (47%), Positives = 25/42 (58%)
 Frame = +3

Query: 249 SGWIMCGVRRVYRHLPKRVLRQYGYVQTIPRHPTDVRDLPTA 290
           +GW +C       HLP+R LR YGYVQT+P  PT +  L  A
Sbjct: 585 AGWFLC-------HLPERGLR*YGYVQTVPIPPTTIEPLEPA 689


>BG453710 weakly similar to GP|21537057|gb| unknown {Arabidopsis thaliana},
           partial (6%)
          Length = 651

 Score = 74.3 bits (181), Expect(2) = 8e-22
 Identities = 45/98 (45%), Positives = 57/98 (57%), Gaps = 1/98 (1%)
 Frame = -3

Query: 38  AAQLMT-YLGVSQHEAEKICNQKYGGYISYPRLRDFYTSYLGRANVLAGTEDPEELEELA 96
           A  LMT  LG+S   A      +  G+ISYP L+  Y  +L  A  L      EEL+E A
Sbjct: 307 AIDLMTRLLGMSDANAMAEIRTESAGHISYPTLKRVYEDHLIEARRLEDPLTREELQERA 128

Query: 97  RVRTYCVRCYLLYLVGCLLFGDRSNKRIELIYLTTMAD 134
           R R +CVR  LLYLV C+LF  ++N+ I+LIYL  MAD
Sbjct: 127 RRRQWCVRSLLLYLVDCVLFTYKTNRHIDLIYLDCMAD 14



 Score = 46.6 bits (109), Expect(2) = 8e-22
 Identities = 20/31 (64%), Positives = 25/31 (80%)
 Frame = -1

Query: 1   MPMGEMTVTLDDVACLTHLPIEGRMLDHGKK 31
           +PMGEMT+TLDDV  L H+PI G MLDH ++
Sbjct: 414 LPMGEMTITLDDVYNLLHIPIHGCMLDHDEQ 322


>BE943429 
          Length = 384

 Score = 85.1 bits (209), Expect = 3e-17
 Identities = 36/70 (51%), Positives = 51/70 (72%)
 Frame = +2

Query: 221 DRIQLDDVCYKPYKEHREIQDFEEVFWYSGWIMCGVRRVYRHLPKRVLRQYGYVQTIPRH 280
           D ++   V ++PY+  R++  F++V WYSGWIM G +++ RHLP+RVLRQYGYVQT+PR 
Sbjct: 2   DSMEHCHVIWRPYEHRRDVTPFQDVCWYSGWIMAGKQKMVRHLPERVLRQYGYVQTVPRP 181

Query: 281 PTDVRDLPTA 290
           PT +  L  A
Sbjct: 182 PTTIVPLAPA 211


>TC82474 
          Length = 992

 Score = 70.1 bits (170), Expect = 1e-12
 Identities = 34/106 (32%), Positives = 55/106 (51%)
 Frame = -2

Query: 194 YLENYPVAARWKLPKGHGEGITYWSLLDRIQLDDVCYKPYKEHREIQDFEEVFWYSGWIM 253
           Y E+ P A R+ L  GH     Y + LDR+++DDV +  Y  H +   F+++  +  WI 
Sbjct: 883 YTEDRPHATRFSLAMGHKSPNNYMTFLDRVEVDDVSFNQYDFHHQTCPFDDIS*FFRWIE 704

Query: 254 CGVRRVYRHLPKRVLRQYGYVQTIPRHPTDVRDLPTAFHCADVRRL 299
           C  +  Y HL + V++ YG++Q+  RHP          +  D+ RL
Sbjct: 703 CDRKMNYHHLLELVMK*YGHIQSTLRHPLSRTRAKCLSNILDITRL 566


>BG454068 weakly similar to GP|22202804|dbj hypothetical protein~predicted by
           GeneMark.hmm etc. {Oryza sativa (japonica
           cultivar-group)}, partial (5%)
          Length = 673

 Score = 68.2 bits (165), Expect = 4e-12
 Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
 Frame = +3

Query: 1   MPMGEMTVTLDDVACLTHLPIEGRMLDHGKKMPKHEGAAQLMTYLGVSQHEAEKICNQKY 60
           +P+GEMT+ LDD++CL H+P+ G +L H + +  H+G   L+ YLG+   E      +  
Sbjct: 387 LPVGEMTIALDDISCLLHIPVGGNLLFH-ESLSIHQGTEYLVNYLGLEFEEIAAETKRLK 563

Query: 61  GGYISYPRLRDFYTSYLGRANVLA---GTEDPEE 91
             +I+Y  L   YTSYL  A   A   G ED  E
Sbjct: 564 SAHITYDTLLSIYTSYLTEAKSYANQPGEEDSME 665


>BG646599 
          Length = 711

 Score = 67.4 bits (163), Expect = 7e-12
 Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
 Frame = +3

Query: 165 RALGGSVTLLTTWFLAHFPGFFSVDLNTDYLENYPV----AARWKLPKGHGEGITYWSLL 220
           + LGG  TLL  W   +FP   +   N    +   +    A RWK P+G+ +      ++
Sbjct: 33  KQLGGYATLLQCWIYEYFPTLGNRVENRVACDEPGMGVARAMRWKYPRGNLKVDQIRRMI 212

Query: 221 DRIQLDDVCYKPYKEHREIQDFEEVFWYSGWIMCGVRRVYRHLPKRVLRQYGYVQTIPRH 280
           D +  +DV + P+  HR++  F+++   SG+I      V  +LP+R LRQ+GY+Q IPR 
Sbjct: 213 DDLTPNDVIWCPFDSHRQVIPFDDICLSSGYIRW-CSNVVPYLPERCLRQFGYIQYIPRP 389

Query: 281 P 281
           P
Sbjct: 390 P 392


>AW693426 homologue to GP|23307580|dbj similar to serine/threonine
           phosphatase PP7 {Oryza sativa (japonica
           cultivar-group)}, partial (2%)
          Length = 209

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 25/69 (36%), Positives = 36/69 (51%)
 Frame = +1

Query: 106 YLLYLVGCLLFGDRSNKRIELIYLTTMADGYAGMRNYSWGGMTLAYLYGELADACRPGHR 165
           +LL LVGC LF D+S   + + YL    D       Y+WG   LA+LY  L  A     +
Sbjct: 1   FLLCLVGCTLFSDKSTFVVNVAYLEFFRD-LDSCGGYAWGVAALAHLYDNLRYASFHHMK 177

Query: 166 ALGGSVTLL 174
           ++ G +TL+
Sbjct: 178 SISGYLTLI 204


>TC77808 similar to PIR|T03843|T03843 prohibitin - common tobacco, partial
           (96%)
          Length = 1202

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 15/37 (40%), Positives = 19/37 (50%), Gaps = 1/37 (2%)
 Frame = -3

Query: 226 DDVCYKPYKEHREIQDFEEVFWYSGWI-MCGVRRVYR 261
           +DV Y+  +EH E     E  WY  W+ MC V   YR
Sbjct: 393 EDVQYQDEREHEE*DSPSEDLWYRRWMRMCEVECGYR 283


>TC80565 weakly similar to GP|14335072|gb|AAK59800.1 AT5g20050/F28I16_200
            {Arabidopsis thaliana}, partial (81%)
          Length = 1581

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +2

Query: 81   NVLAGTEDPEELEELARVRTYC---VRCYLLYLVGCLLFGDR 119
            ++LA  EDP +L  LAR+ T     V C   Y +G  +F  R
Sbjct: 1325 DLLADDEDPTDLNNLARLLTPVSSNVECTSTYSLGSTIFSGR 1450


>TC91460 similar to GP|19698839|gb|AAL91155.1 cytochrome P450 {Arabidopsis
           thaliana}, partial (59%)
          Length = 976

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 19/53 (35%), Positives = 25/53 (46%), Gaps = 12/53 (22%)
 Frame = +2

Query: 165 RALGGSVTLLTTW----FLAHFPGFFSVDLNTDYLE--------NYPVAARWK 205
           RA G S T  T+     FLAH  GF++V  +   LE        NYP   +W+
Sbjct: 161 RATGVSATYQTSIMPFPFLAHKQGFYTVTCHPKNLEHILRTRFDNYPKGPKWQ 319


>TC81072 similar to PIR|T05401|T05401 hypothetical protein F10M6.90 -
           Arabidopsis thaliana, partial (13%)
          Length = 745

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 10/39 (25%), Positives = 24/39 (60%), Gaps = 3/39 (7%)
 Frame = +2

Query: 80  ANVLAGTEDPEELEELARV---RTYCVRCYLLYLVGCLL 115
           A+++  ++ P   +   R+   +T+C+RC L+Y++ C +
Sbjct: 302 ASIIGSSQKPNR*QTFQRLCYDQTWCLRCNLVYVLRCFV 418


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.325    0.142    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,473,258
Number of Sequences: 36976
Number of extensions: 181635
Number of successful extensions: 958
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of query: 304
length of database: 9,014,727
effective HSP length: 96
effective length of query: 208
effective length of database: 5,465,031
effective search space: 1136726448
effective search space used: 1136726448
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.9 bits)