TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139854.7 + phase: 0 /pseudo
         (672 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF648394                                                              188  7e-48
TC80591                                                                82  5e-16
TC88749                                                                64  2e-10
BG588495                                                               42  8e-04
TC81753 similar to PIR|G96752|G96752 unknown protein F28P22.2 [i...    30  2.3
TC82610 similar to GP|9758170|dbj|BAB08555.1 wax synthase-like p...    28  8.7
TC76948 similar to SP|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein...    28  8.7

>BF648394 
          Length = 650

 Score =  188 bits (477), Expect = 7e-48
 Identities = 88/117 (75%), Positives = 94/117 (80%)
 Frame = -1

Query: 471 SNRPMLC*RNTWTIVWVIWVLVGRKYMTCCCFSSPLYKHHLVTVFPCWNIDSKMSPCTRG 530
           SN+  + *RN WTIVWVIWVLVGRKYMTCCCFSS LYK  LV    CWNIDS MS CTRG
Sbjct: 647 SNQLXIY*RNIWTIVWVIWVLVGRKYMTCCCFSSLLYKQPLVRALACWNIDSNMSLCTRG 468

Query: 531 *VVMCLDMLWTTLLWKRHVVGKHCAWTMTFVVVFKGHLTGYHVELKAIVERLKKLPF 587
           *VVMCLDMLWTTLLWKRH+VGKHCA TMTF VVFKG LTGYHV  K ++  LK+  F
Sbjct: 467 *VVMCLDMLWTTLLWKRHIVGKHCACTMTFEVVFKGLLTGYHVHAKLLLSSLKRSQF 297



 Score =  132 bits (332), Expect = 4e-31
 Identities = 67/73 (91%), Positives = 69/73 (93%)
 Frame = -2

Query: 573 VELKAIVERLKKLPFQMKLEVKEGLRQLAFPETTLMSPPPRKVPTKGAKKKFDIARSKGK 632
           VELKAIVE LKKLPFQMK+EVKEGLRQL FPETT+MSPPPRKVPTKGAKKK DIARSKGK
Sbjct: 220 VELKAIVEHLKKLPFQMKVEVKEGLRQLTFPETTMMSPPPRKVPTKGAKKKVDIARSKGK 41

Query: 633 ITSTSRIPSSGEV 645
           ITSTSRIPSS EV
Sbjct: 40  ITSTSRIPSSWEV 2


>TC80591 
          Length = 734

 Score = 82.4 bits (202), Expect = 5e-16
 Identities = 41/49 (83%), Positives = 43/49 (87%)
 Frame = +1

Query: 1   MVENAKDVPGETKQNFVENSGDVKPPNVEAKTNIDGASVHVEASKYVGG 49
           MVENA+DV GETKQ FV  SGDVKPP VEAK+NIDGA VHVEASKYVGG
Sbjct: 583 MVENAEDVLGETKQYFVRISGDVKPPKVEAKSNIDGAFVHVEASKYVGG 729


>TC88749 
          Length = 1221

 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 29/68 (42%), Positives = 43/68 (62%)
 Frame = +2

Query: 68  DDVKSKNRDELLELVRRQANKAGFTIVTQRSSLINPMFRLVCERSGSHIIPKKNRSMRER 127
           + V  K+++++L  +RRQAN+AGFT+  +RSS+ NPM  L+CERSG H + KK       
Sbjct: 539 NQVTWKDKEDMLSSIRRQANRAGFTVGIKRSSIQNPMLELMCERSGDHKVSKKRLKHEAT 718

Query: 128 AQENAVAY 135
              N+  Y
Sbjct: 719 *SRNSAVY 742


>BG588495 
          Length = 540

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 21/31 (67%), Positives = 24/31 (76%)
 Frame = +3

Query: 70  VKSKNRDELLELVRRQANKAGFTIVTQRSSL 100
           VKSK+RDELLE  R QANKAGFTI   ++ L
Sbjct: 12  VKSKDRDELLEWTRHQANKAGFTIDDLKAQL 104


>TC81753 similar to PIR|G96752|G96752 unknown protein F28P22.2 [imported] -
           Arabidopsis thaliana, partial (6%)
          Length = 1273

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 22/58 (37%), Positives = 28/58 (47%)
 Frame = +1

Query: 610 PPPRKVPTKGAKKKFDIARSKGKITSTSRIPSSGEVVDSQNPDSQWSPSPTTSSYKRK 667
           PPP K+P    + + D  R     +S S  P S EVV+S  P SQ S SP     + K
Sbjct: 805 PPPFKLPAWKFRVQGDYVRVDSIGSSRSGSPDSDEVVES--PVSQCSNSPYAEDGEEK 972


>TC82610 similar to GP|9758170|dbj|BAB08555.1 wax synthase-like protein
           {Arabidopsis thaliana}, partial (9%)
          Length = 816

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 499 CCCFSSPLYKHHLV 512
           CCCFS  L  HHLV
Sbjct: 431 CCCFSEMLQSHHLV 472


>TC76948 similar to SP|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A
            chloroplast precursor (CP29A). [Wood tobacco] {Nicotiana
            sylvestris}, partial (61%)
          Length = 1374

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 543  LLWKRHVVGKHCAWTMT-FVVVFK 565
            +LW  H VGK+ AW +  F+V+FK
Sbjct: 1298 MLWITHYVGKYYAWILVMFLVLFK 1369


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.351    0.154    0.553 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,875,184
Number of Sequences: 36976
Number of extensions: 398664
Number of successful extensions: 4194
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2348
Number of HSP's successfully gapped in prelim test: 196
Number of HSP's that attempted gapping in prelim test: 1781
Number of HSP's gapped (non-prelim): 2686
length of query: 672
length of database: 9,014,727
effective HSP length: 103
effective length of query: 569
effective length of database: 5,206,199
effective search space: 2962327231
effective search space used: 2962327231
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 62 (28.5 bits)