TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139854.1 - phase: 0 /pseudo
         (406 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF005939                                                               57  2e-08
BE941423                                                               48  8e-06
BE239551                                                               41  7e-04
TC79853 similar to GP|13605811|gb|AAK32891.1 AT5g36940/MLF18_60 ...    28  8.3

>BF005939 
          Length = 696

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 63/197 (31%), Positives = 83/197 (41%), Gaps = 22/197 (11%)
 Frame = -1

Query: 231 KLVELMLKVCIDLR*SIG*CLESVLSLEPCDLMHFREK------LHS-----------AR 273
           +L++L+ KV +DLR* +G  L+S+L LEPC+   F  K       HS           AR
Sbjct: 678 ELIKLL*KVFLDLR*CLGQTLKSILGLEPCESSVFL*K*EAWP*RHSSLATASYEPRLAR 499

Query: 274 ADIHRSPQ*AASLASRGMKFIARLASKSPPPRELHLVARYSEQITRHSELTSEENLILRI 333
            ++HRSP+     ASR       +AS                 +TRHSEL  +   IL  
Sbjct: 498 DELHRSPREPFPFASRVPLVSLAIAS----------------NLTRHSELRQKAC*ILCF 367

Query: 334 NSFSRALDIFGCLNMYKND*ASF*IEIEH-----WEVKNGIFG*KMSSSREHPVSVRQGE 388
           +  S  L  F CLN+  +D*   * +IE      WE    +FG                 
Sbjct: 366 DLLSWTLSAFECLNIPSSD*E*M*GKIEPRTTLVWE----LFG----------------- 250

Query: 389 *PFS*TRHSE*SASPRE 405
                TRH E*  SPRE
Sbjct: 249 -----TRHGE*ELSPRE 214


>BE941423 
          Length = 640

 Score = 47.8 bits (112), Expect = 8e-06
 Identities = 29/64 (45%), Positives = 35/64 (54%)
 Frame = -1

Query: 298 ASKSPPPRELHLVARYSEQITRHSELTSEENLILRINSFSRALDIFGCLNMYKND*ASF* 357
           A+  P PRELH+ AR+SEQ+   S+L      I      S  LD F CLNM  ND*   *
Sbjct: 640 ANHFPSPRELHVAARHSEQMNSPSDLDQRACKISYF*LLS*TLDAFECLNMSNND*ERM* 461

Query: 358 IEIE 361
            EI+
Sbjct: 460 DEIK 449


>BE239551 
          Length = 643

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 23/27 (85%), Positives = 23/27 (85%)
 Frame = -3

Query: 97  *LCDVCYFI*EALFYYLIE*DLKIK*I 123
           *LCDV YFI*E LFYYLIE*DL I *I
Sbjct: 83  *LCDV*YFI*EVLFYYLIE*DLTI**I 3


>TC79853 similar to GP|13605811|gb|AAK32891.1 AT5g36940/MLF18_60
           {Arabidopsis thaliana}, partial (23%)
          Length = 782

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 10/26 (38%), Positives = 12/26 (45%)
 Frame = +2

Query: 37  WST*ASWQNGNGVCSKKINLFGRGCW 62
           W   +SW +G G C   I  F  G W
Sbjct: 146 WCIRSSWNSGKGTCWTSITTFIHGSW 223


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.369    0.170    0.610 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,611,197
Number of Sequences: 36976
Number of extensions: 152573
Number of successful extensions: 2003
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 882
Number of HSP's gapped (non-prelim): 1219
length of query: 406
length of database: 9,014,727
effective HSP length: 98
effective length of query: 308
effective length of database: 5,391,079
effective search space: 1660452332
effective search space used: 1660452332
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 59 (27.3 bits)