TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139841.7 - phase: 0 
         (46 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF633888 similar to GP|14599415|em urease {Solanum tuberosum}, p...    30  0.20
TC78190 weakly similar to PIR|T49041|T49041 DNA-binding protein-...    27  1.7
AL375902 similar to GP|9759134|dbj mutator-like transposase-like...    27  2.2
TC88387 similar to GP|13357253|gb|AAK20050.1 putative zinc finge...    25  8.4
BQ124078 similar to GP|12322632|gb unknown protein  5' partial {...    25  8.4

>BF633888 similar to GP|14599415|em urease {Solanum tuberosum}, partial (29%)
          Length = 663

 Score = 30.0 bits (66), Expect = 0.20
 Identities = 11/19 (57%), Positives = 13/19 (67%)
 Frame = +3

Query: 22  ETERRCGVCRMSDHSRKDC 40
           E  RRC +CR+ D SR DC
Sbjct: 375 ELSRRCCICRIKDKSRDDC 431


>TC78190 weakly similar to PIR|T49041|T49041 DNA-binding protein-like -
           Arabidopsis thaliana, partial (27%)
          Length = 1254

 Score = 26.9 bits (58), Expect = 1.7
 Identities = 11/24 (45%), Positives = 15/24 (61%)
 Frame = -2

Query: 12  TRIRTEMDDVETERRCGVCRMSDH 35
           TRI +++   E E  CGVCR+  H
Sbjct: 776 TRIESQLVSSENETICGVCRVDLH 705


>AL375902 similar to GP|9759134|dbj mutator-like transposase-like protein
           {Arabidopsis thaliana}, partial (20%)
          Length = 542

 Score = 26.6 bits (57), Expect = 2.2
 Identities = 16/42 (38%), Positives = 21/42 (49%), Gaps = 3/42 (7%)
 Frame = +2

Query: 3   RAKKGRPPITRIRTEMDDVETERR---CGVCRMSDHSRKDCT 41
           R   GRP    +R E  + +  +R   CG C M  HS+K CT
Sbjct: 257 RRPPGRPKKKVLRVE--NFKRPKRVVQCGRCHMLGHSQKKCT 376


>TC88387 similar to GP|13357253|gb|AAK20050.1 putative zinc finger protein
           {Oryza sativa (japonica cultivar-group)}, partial (96%)
          Length = 1286

 Score = 24.6 bits (52), Expect = 8.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 24  ERRCGVCRMSDHSRKDCTN 42
           E+ C  CR + H  +DC N
Sbjct: 721 EKACNNCRKTGHLARDCPN 777


>BQ124078 similar to GP|12322632|gb unknown protein  5' partial {Arabidopsis
           thaliana}, partial (31%)
          Length = 529

 Score = 24.6 bits (52), Expect = 8.4
 Identities = 8/18 (44%), Positives = 11/18 (60%)
 Frame = +1

Query: 26  RCGVCRMSDHSRKDCTNI 43
           +CGVC   D+  +DC  I
Sbjct: 403 KCGVCCQPDYVNRDCCGI 456


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.325    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,493,638
Number of Sequences: 36976
Number of extensions: 12355
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of query: 46
length of database: 9,014,727
effective HSP length: 22
effective length of query: 24
effective length of database: 8,201,255
effective search space: 196830120
effective search space used: 196830120
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)