BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139841.3 + phase: 0
(154 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC76612 homologue to GP|7340791|emb|CAA63107.1 ribosomal protein... 293 2e-80
TC76624 similar to GP|21592339|gb|AAM64290.1 60S ribosomal prote... 278 8e-76
BM812823 homologue to GP|7340791|emb ribosomal protein L23 {Spin... 265 4e-72
BQ151924 homologue to GP|7340791|emb ribosomal protein L23 {Spin... 241 8e-65
AW329812 homologue to GP|7340791|emb| ribosomal protein L23 {Spi... 152 4e-38
BG450237 homologue to SP|O22582|H2B_ Histone H2B. [Upland cotton... 112 5e-26
BQ146005 homologue to GP|7340791|emb| ribosomal protein L23 {Spi... 107 2e-24
TC84591 similar to GP|15293915|gb|AAK95150.1 ribosomal protein L... 93 5e-20
AW689944 similar to GP|13877517|gb| BEL1-like homeodomain 1 {Ara... 32 0.13
TC78130 similar to GP|22652125|gb|AAN03626.1 BEL1-related homeot... 32 0.13
TC86408 weakly similar to GP|21805645|gb|AAL66770.1 cytochrome P... 31 0.23
AL373980 similar to PIR|T00556|T005 60S ribosomal protein L23A [... 30 0.50
TC81629 similar to GP|15081654|gb|AAK82482.1 AT4g26750/F10M23_90... 29 0.66
TC88089 similar to PIR|T51367|T51367 probable PRL1 associated pr... 28 1.1
AW329517 similar to SP|Q90508|VIT1 Vitellogenin I precursor (VTG... 28 1.5
TC86406 weakly similar to GP|9294388|dbj|BAB02398.1 cytochrome P... 28 1.9
TC86407 weakly similar to GP|18175678|gb|AAL59909.1 putative cyt... 28 1.9
TC91161 weakly similar to GP|8778305|gb|AAF79314.1| F14J16.11 {A... 27 2.5
BG455563 similar to PIR|T05151|T051 hypothetical protein F18E5.5... 27 4.3
TC90890 similar to PIR|C86148|C86148 hypothetical protein AAF784... 26 5.6
>TC76612 homologue to GP|7340791|emb|CAA63107.1 ribosomal protein L23
{Spinacia oleracea}, partial (94%)
Length = 819
Score = 293 bits (749), Expect = 2e-80
Identities = 148/148 (100%), Positives = 148/148 (100%)
Frame = +3
Query: 7 GDVSKKTDPKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPR 66
GDVSKKTDPKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPR
Sbjct: 87 GDVSKKTDPKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPR 266
Query: 67 NKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLI 126
NKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLI
Sbjct: 267 NKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLI 446
Query: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154
RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 447 RPDGTKKAYVRLTPDYDALDVANKIGII 530
>TC76624 similar to GP|21592339|gb|AAM64290.1 60S ribosomal protein L23A
{Arabidopsis thaliana}, complete
Length = 790
Score = 278 bits (710), Expect = 8e-76
Identities = 142/149 (95%), Positives = 146/149 (97%), Gaps = 1/149 (0%)
Frame = +2
Query: 7 GDVSKKTDPKAQALKAAKAVKSGTAIKK-AKKIRTTVTFHRPKTQTKDRNPKYPRISATP 65
GD +KKTDPKAQALKAAKAVKSGTAIKK AKKIRTTVTFHRPKT ++DRNPKYPRISATP
Sbjct: 113 GDGAKKTDPKAQALKAAKAVKSGTAIKKKAKKIRTTVTFHRPKTLSRDRNPKYPRISATP 292
Query: 66 RNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTL 125
RNKLDHYQILK+PLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTL
Sbjct: 293 RNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTL 472
Query: 126 IRPDGTKKAYVRLTPDYDALDVANKIGII 154
IRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 473 IRPDGTKKAYVRLTPDYDALDVANKIGII 559
>BM812823 homologue to GP|7340791|emb ribosomal protein L23 {Spinacia
oleracea}, partial (91%)
Length = 681
Score = 265 bits (678), Expect = 4e-72
Identities = 135/149 (90%), Positives = 141/149 (94%), Gaps = 1/149 (0%)
Frame = +2
Query: 7 GDVSKKTDPKAQALKAAKAVKSGTAIKK-AKKIRTTVTFHRPKTQTKDRNPKYPRISATP 65
G+ +KK DPKA+ALK AKAVKSG IKK KKIRTTVTFHRPKT +++RNPKYPRISATP
Sbjct: 53 GENAKKADPKAKALKTAKAVKSGQVIKKKTKKIRTTVTFHRPKTLSRERNPKYPRISATP 232
Query: 66 RNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTL 125
RNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTL
Sbjct: 233 RNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTL 412
Query: 126 IRPDGTKKAYVRLTPDYDALDVANKIGII 154
IRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 413 IRPDGTKKAYVRLTPDYDALDVANKIGII 499
>BQ151924 homologue to GP|7340791|emb ribosomal protein L23 {Spinacia
oleracea}, partial (76%)
Length = 701
Score = 241 bits (615), Expect = 8e-65
Identities = 120/120 (100%), Positives = 120/120 (100%)
Frame = +2
Query: 35 AKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTL 94
AKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTL
Sbjct: 2 AKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTL 181
Query: 95 VFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
VFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 182 VFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 361
>AW329812 homologue to GP|7340791|emb| ribosomal protein L23 {Spinacia
oleracea}, partial (49%)
Length = 510
Score = 152 bits (385), Expect = 4e-38
Identities = 77/77 (100%), Positives = 77/77 (100%)
Frame = -1
Query: 78 PLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVR 137
PLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVR
Sbjct: 432 PLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVR 253
Query: 138 LTPDYDALDVANKIGII 154
LTPDYDALDVANKIGII
Sbjct: 252 LTPDYDALDVANKIGII 202
>BG450237 homologue to SP|O22582|H2B_ Histone H2B. [Upland cotton] {Gossypium
hirsutum}, partial (80%)
Length = 682
Score = 112 bits (281), Expect = 5e-26
Identities = 54/63 (85%), Positives = 57/63 (89%)
Frame = +1
Query: 28 SGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDHYQILKFPLTTESAMKK 87
S + ++KAKKIRTTVTFHRPKTQTKDRNPKYPRI ATPRNKLDHY ILKFPLTT SAM K
Sbjct: 478 SRSFLEKAKKIRTTVTFHRPKTQTKDRNPKYPRIXATPRNKLDHYXILKFPLTTXSAMXK 657
Query: 88 IED 90
IED
Sbjct: 658 IED 666
>BQ146005 homologue to GP|7340791|emb| ribosomal protein L23 {Spinacia
oleracea}, partial (34%)
Length = 528
Score = 107 bits (266), Expect = 2e-24
Identities = 53/55 (96%), Positives = 53/55 (96%)
Frame = +1
Query: 100 LRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
LRADKKKIKDAV KMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDV NKIGII
Sbjct: 22 LRADKKKIKDAVXKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVTNKIGII 186
>TC84591 similar to GP|15293915|gb|AAK95150.1 ribosomal protein L23a
{Ictalurus punctatus}, partial (90%)
Length = 599
Score = 92.8 bits (229), Expect = 5e-20
Identities = 44/69 (63%), Positives = 56/69 (80%)
Frame = +1
Query: 86 KKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDAL 145
KK+ +VD +A+K++IKDAVKK+YD+ A+K+NTLIRP+GTKKAYVRLT D DAL
Sbjct: 247 KKLRTQTRSFSLVDTQANKRQIKDAVKKLYDVDAQKINTLIRPNGTKKAYVRLTSDVDAL 426
Query: 146 DVANKIGII 154
+VANKIG I
Sbjct: 427 EVANKIGFI 453
Score = 92.8 bits (229), Expect = 5e-20
Identities = 50/82 (60%), Positives = 56/82 (67%)
Frame = +3
Query: 16 KAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDHYQIL 75
K++AL A KAV G K KK RT+ TFHRPKT R PKYPR S +LD Y+I+
Sbjct: 36 KSKALSAKKAVLKGVHGKIKKKPRTSTTFHRPKTLRLRRKPKYPRKSLAHTPRLDQYKII 215
Query: 76 KFPLTTESAMKKIEDNNTLVFI 97
K PL TESAMKKIED NTLVFI
Sbjct: 216 KNPLNTESAMKKIEDTNTLVFI 281
>AW689944 similar to GP|13877517|gb| BEL1-like homeodomain 1 {Arabidopsis
thaliana}, partial (6%)
Length = 626
Score = 31.6 bits (70), Expect = 0.13
Identities = 13/32 (40%), Positives = 19/32 (58%)
Frame = -3
Query: 47 PKTQTKDRNPKYPRISATPRNKLDHYQILKFP 78
PK ++K RNP + R A PR L+H ++ P
Sbjct: 264 PKHRSKQRNPTHQREHACPRPTLEHVSLMTVP 169
>TC78130 similar to GP|22652125|gb|AAN03626.1 BEL1-related homeotic protein
29 {Solanum tuberosum}, partial (58%)
Length = 2740
Score = 31.6 bits (70), Expect = 0.13
Identities = 13/32 (40%), Positives = 19/32 (58%)
Frame = -2
Query: 47 PKTQTKDRNPKYPRISATPRNKLDHYQILKFP 78
PK ++K RNP + R A PR L+H ++ P
Sbjct: 801 PKHRSKQRNPTHQREHACPRPTLEHVSLMTVP 706
>TC86408 weakly similar to GP|21805645|gb|AAL66770.1 cytochrome P450
monooxygenase CYP72A5 {Zea mays subsp. mays}, partial
(10%)
Length = 517
Score = 30.8 bits (68), Expect = 0.23
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 103 DKKKIKDAVKKMYDIQAKKVNTLIR 127
D ++IKD + K+YD Q VN L+R
Sbjct: 402 DPEQIKDVINKIYDFQKPNVNPLVR 476
>AL373980 similar to PIR|T00556|T005 60S ribosomal protein L23A [imported]
- Arabidopsis thaliana, partial (9%)
Length = 244
Score = 29.6 bits (65), Expect = 0.50
Identities = 17/25 (68%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 11 KKTDPKAQAL-KAAKAVKSGTAIKK 34
+KT K KAAKAVKSGTAIKK
Sbjct: 71 RKTGSKGTGXGKAAKAVKSGTAIKK 145
>TC81629 similar to GP|15081654|gb|AAK82482.1 AT4g26750/F10M23_90
{Arabidopsis thaliana}, partial (19%)
Length = 824
Score = 29.3 bits (64), Expect = 0.66
Identities = 14/44 (31%), Positives = 23/44 (51%)
Frame = +2
Query: 50 QTKDRNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNT 93
Q+++ P YP P L H+Q +P TES++ + N+T
Sbjct: 242 QSQNLGPNYPSHETPPPYSLPHFQ--SYPSFTESSLPSVPVNHT 367
>TC88089 similar to PIR|T51367|T51367 probable PRL1 associated protein
[imported] - Arabidopsis thaliana, partial (8%)
Length = 1016
Score = 28.5 bits (62), Expect = 1.1
Identities = 11/27 (40%), Positives = 15/27 (54%)
Frame = -3
Query: 45 HRPKTQTKDRNPKYPRISATPRNKLDH 71
H+P QT +NPK P+ P K +H
Sbjct: 537 HKPAPQTHLKNPKNPKSKPNPTQKKNH 457
>AW329517 similar to SP|Q90508|VIT1 Vitellogenin I precursor (VTG I)
[Contains: Lipovitellin 1 (LV1); Phosvitin (PV);
Lipovitellin 2, partial (1%)
Length = 539
Score = 28.1 bits (61), Expect = 1.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 13 TDPKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTK 52
T+ K + A+ SG K KKI TT TFH K++ +
Sbjct: 229 TEKKQKKNNLRTAMMSGMKNLKMKKILTTTTFHTGKSKMR 348
>TC86406 weakly similar to GP|9294388|dbj|BAB02398.1 cytochrome P450
{Arabidopsis thaliana}, partial (75%)
Length = 1795
Score = 27.7 bits (60), Expect = 1.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 103 DKKKIKDAVKKMYDIQAKKVNTLIR 127
D +IKD + K+YD Q N L+R
Sbjct: 390 DPDQIKDVLNKIYDFQKPNANPLVR 464
>TC86407 weakly similar to GP|18175678|gb|AAL59909.1 putative cytochrome
P450 protein {Arabidopsis thaliana}, partial (43%)
Length = 839
Score = 27.7 bits (60), Expect = 1.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 103 DKKKIKDAVKKMYDIQAKKVNTLIR 127
D +IKD + K+YD Q N L+R
Sbjct: 518 DPDQIKDVLNKIYDFQKPNANPLVR 592
>TC91161 weakly similar to GP|8778305|gb|AAF79314.1| F14J16.11 {Arabidopsis
thaliana}, partial (17%)
Length = 1330
Score = 27.3 bits (59), Expect = 2.5
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -1
Query: 44 FHRPKTQTKDRNPKYPRISATPRNKLDHYQILKFPLTTES 83
FH PK D P+ LDHY L FP T ES
Sbjct: 499 FHLPKVFPADAKPR-----------LDHYFSLSFPSTKES 413
>BG455563 similar to PIR|T05151|T051 hypothetical protein F18E5.50 -
Arabidopsis thaliana, partial (7%)
Length = 663
Score = 26.6 bits (57), Expect = 4.3
Identities = 15/49 (30%), Positives = 28/49 (56%)
Frame = +3
Query: 85 MKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKK 133
MKK + N +V V++R++KKK K + D+Q + +++ + KK
Sbjct: 288 MKKKKKQNDVVE-VEIRSNKKKKKSKKNDVVDVQLDLIRMVLQREVEKK 431
>TC90890 similar to PIR|C86148|C86148 hypothetical protein AAF78401.1
[imported] - Arabidopsis thaliana, partial (55%)
Length = 926
Score = 26.2 bits (56), Expect = 5.6
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 47 PKTQTKDRNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNT 93
P + ++R PR+ T RNK+ + + +P+ KI N T
Sbjct: 91 PLEELRERRLTDPRLPITYRNKVATSEFIPWPIEIRFCEPKIATNQT 231
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.317 0.132 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,731,730
Number of Sequences: 36976
Number of extensions: 35575
Number of successful extensions: 267
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of query: 154
length of database: 9,014,727
effective HSP length: 88
effective length of query: 66
effective length of database: 5,760,839
effective search space: 380215374
effective search space used: 380215374
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Medicago: description of AC139841.3