BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139841.2 - phase: 0 /pseudo
(285 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC84224 similar to GP|9758839|dbj|BAB09511.1 UDP-galactose trans... 292 5e-80
TC79364 similar to GP|16649145|gb|AAL24424.1 Unknown protein {Ar... 76 2e-14
BG453166 similar to PIR|T49259|T492 hypothetical protein F12M12.... 66 1e-11
TC88165 similar to GP|7716952|gb|AAF68626.1| NAC1 {Medicago trun... 30 1.1
CA989493 30 1.4
BE999768 similar to GP|15809884|gb| At1g18720/F6A14_17 {Arabidop... 29 1.8
TC89699 similar to GP|20258985|gb|AAM14208.1 putative phosphatid... 29 1.8
TC82956 similar to GP|7299181|gb|AAF54379.1| CG16777 gene produc... 29 2.4
BQ158001 29 2.4
CA989495 28 3.1
TC80968 homologue to GP|14488073|gb|AAK63857.1 AT4g04860/T4B21_2... 28 5.3
BI308444 similar to GP|9294587|dbj contains similarity to unknow... 27 9.0
BE324597 27 9.0
>TC84224 similar to GP|9758839|dbj|BAB09511.1 UDP-galactose transporter
related protein-like {Arabidopsis thaliana}, partial
(52%)
Length = 798
Score = 292 bits (747), Expect(2) = 5e-80
Identities = 143/180 (79%), Positives = 158/180 (87%)
Frame = +2
Query: 10 SSSSSSLDDSNVTRNKLWKVAFAVSGIMLTLVTYGVLQEKIMRVPYGVNKDYFKYSLFLV 69
SSSSS+ + R+ LWK FAVSGIMLTLVTYG+LQEKIMR+PYG K+YFK+SLFLV
Sbjct: 164 SSSSSTTSTAVSFRDNLWKGTFAVSGIMLTLVTYGLLQEKIMRIPYGAEKEYFKHSLFLV 343
Query: 70 FCNRITTSAVSAAALVARDKALLPVAPIYKYCLVSVSNILTTTCQYEALKYVSFPVQTLA 129
FCNRI TSAVSA +L+A KAL PVAPIYKY LVSV+NILTTTCQYEALKYVSFPVQTLA
Sbjct: 344 FCNRIMTSAVSAGSLLASKKALDPVAPIYKYSLVSVTNILTTTCQYEALKYVSFPVQTLA 523
Query: 130 KCAKMIPVMIWSALIMQKKYQGTDYLLAFSVTLGCSIFILYPAGTDISPYGRGRENTIWG 189
KCAKMIPVM+W LIMQK+Y+G DYLLAF VTLGCS+FILYPAGTDISPY RGRENT+WG
Sbjct: 524 KCAKMIPVMVWGTLIMQKRYKGPDYLLAFLVTLGCSVFILYPAGTDISPYSRGRENTVWG 703
Score = 23.5 bits (49), Expect(2) = 5e-80
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 189 GILLMIGYLGYHYKTQSL 206
G+LLM+GYLG + Q +
Sbjct: 702 GVLLMVGYLGV*WALQHI 755
>TC79364 similar to GP|16649145|gb|AAL24424.1 Unknown protein {Arabidopsis
thaliana}, complete
Length = 1377
Score = 75.9 bits (185), Expect = 2e-14
Identities = 45/141 (31%), Positives = 69/141 (48%)
Frame = +3
Query: 29 VAFAVSGIMLTLVTYGVLQEKIMRVPYGVNKDYFKYSLFLVFCNRITTSAVSAAALVARD 88
+AF V+GI + G+LQE + +G + + F++ FL + S +
Sbjct: 126 LAFCVAGIWSAYIYQGILQETLSTKRFGKDAERFEHLAFLNLAQNVVCLIWSYIMIKIWG 305
Query: 89 KALLPVAPIYKYCLVSVSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWSALIMQKK 148
AP + Y ++N + EALKY+S+P Q LAK +KMIPVM+ +L+ +
Sbjct: 306 GGNTGGAPWWSYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGSLVYGIR 485
Query: 149 YQGTDYLLAFSVTLGCSIFIL 169
Y +YL F V G S F L
Sbjct: 486 YTIPEYLCTFLVAGGVSSFAL 548
>BG453166 similar to PIR|T49259|T492 hypothetical protein F12M12.150 -
Arabidopsis thaliana, partial (28%)
Length = 663
Score = 66.2 bits (160), Expect = 1e-11
Identities = 39/57 (68%), Positives = 45/57 (78%), Gaps = 2/57 (3%)
Frame = +2
Query: 231 HI*LLFI--QVLSYKDI*YQL*SLFITIMIVSLTYYCFQPLQQLVNFLFPTQFAILV 285
H L+F+ QVL YKD *YQ *+L+I IMIVSLT + FQ LQQ VNFLFPTQFA+LV
Sbjct: 17 HCVLVFLA*QVLLYKDK*YQQ*NLYIGIMIVSLT*HYFQLLQQSVNFLFPTQFALLV 187
>TC88165 similar to GP|7716952|gb|AAF68626.1| NAC1 {Medicago truncatula},
partial (61%)
Length = 1231
Score = 30.0 bits (66), Expect = 1.1
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 207 FAFRLFSLAYFVSFLSSLLESHSFHI*LLFIQV 239
F F LF +++F+S LSSL S++ + LF+ +
Sbjct: 222 FRFSLFKISFFISLLSSLFRSYNNALDSLFLNL 320
>CA989493
Length = 622
Score = 29.6 bits (65), Expect = 1.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 19 SNVTRNKLWKVAFAVSGIMLTLVTYGVL 46
SN+T+NK W V G ++ L+T+ +L
Sbjct: 406 SNMTKNKWWSCLHKVKGTIMMLITFWIL 489
>BE999768 similar to GP|15809884|gb| At1g18720/F6A14_17 {Arabidopsis
thaliana}, partial (29%)
Length = 605
Score = 29.3 bits (64), Expect = 1.8
Identities = 15/41 (36%), Positives = 24/41 (57%)
Frame = +3
Query: 188 WGILLMIGYLGYHYKTQSLFAFRLFSLAYFVSFLSSLLESH 228
W ILL + YL Y+Y + + A L++ + +S LS+ SH
Sbjct: 222 WTILLTLSYLAYYYALEPVGAL-LYTPQFVLSCLSATAYSH 341
>TC89699 similar to GP|20258985|gb|AAM14208.1 putative
phosphatidylglycerotransferase {Arabidopsis thaliana},
partial (60%)
Length = 1176
Score = 29.3 bits (64), Expect = 1.8
Identities = 29/81 (35%), Positives = 37/81 (44%), Gaps = 2/81 (2%)
Frame = +3
Query: 200 HYKTQSLFAFRLFSLAYFVSFLSSLLESHSFHI*L-LFIQVLSYKDI*YQL*SLFITIMI 258
HY T F+F L + A F SSLL SF L LFI L LF + +
Sbjct: 132 HYSTTRFFSFLLITAAPF----SSLLRLGSFLNPLPLFIITLK---------PLFFAVTL 272
Query: 259 VSLTYY-CFQPLQQLVNFLFP 278
+ LT++ QPL Q + L P
Sbjct: 273 LILTFFGSQQPLYQTIVVLIP 335
>TC82956 similar to GP|7299181|gb|AAF54379.1| CG16777 gene product
{Drosophila melanogaster}, partial (5%)
Length = 803
Score = 28.9 bits (63), Expect = 2.4
Identities = 21/73 (28%), Positives = 38/73 (51%), Gaps = 3/73 (4%)
Frame = +1
Query: 209 FRLFSLAYFVS-FLSSLLESHSFHI*LLFIQVLSYKDI*YQL*SLFI--TIMIVSLTYYC 265
+R SL VS +LS+ +E + + L+++ LS K + Y + ++ I ++ LTY
Sbjct: 37 YR*ISLDILVSGYLSNYIEKYRIY---LYVKTLS*KCLKYLICVIYAICAIYVICLTYLI 207
Query: 266 FQPLQQLVNFLFP 278
+Q Q +FP
Sbjct: 208 YQTYQTFRTLIFP 246
>BQ158001
Length = 891
Score = 28.9 bits (63), Expect = 2.4
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = -2
Query: 60 DYFKYSLFLVF-CNRITTSAVSAAALVARDKALLPVAPIYKYCLVSVSNILTTTCQYEAL 118
D + SL+ V+ C TSA+S + + ++ + IY+YC V I TT +Y L
Sbjct: 617 DNQRVSLYYVYKCYPADTSAISLIYVDIQLLSVTSLRSIYRYCAHFV-YI*TTIIKYILL 441
Query: 119 KYVSF 123
Y+S+
Sbjct: 440 SYISY 426
>CA989495
Length = 555
Score = 28.5 bits (62), Expect = 3.1
Identities = 13/47 (27%), Positives = 25/47 (52%)
Frame = +3
Query: 186 TIWGILLMIGYLGYHYKTQSLFAFRLFSLAYFVSFLSSLLESHSFHI 232
T W +LL++ ++ Y + + F +S +F+S L+ SFH+
Sbjct: 168 TFWLLLLLLPFISYFF-AYLFYHFMSYSTNHFISCFIHLISILSFHL 305
>TC80968 homologue to GP|14488073|gb|AAK63857.1 AT4g04860/T4B21_2
{Arabidopsis thaliana}, partial (79%)
Length = 745
Score = 27.7 bits (60), Expect = 5.3
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 154 YLLAFSVT-LGCSIFILYPAGTDISPYGRGRENTIWGILLMIGYLGYHYKTQSLFAFRLF 212
YL A VT +GCS+ I+ P ++P ++ W L+ +L Y K F F +F
Sbjct: 218 YLTAAVVTTIGCSLEIISPYHLYLNPRLVVKQYQFW--RLVTNFL-YFRKMDLDFLFHMF 388
Query: 213 SLAYFVSFLSSLLESHSF 230
LA + LLE +SF
Sbjct: 389 FLARY----CKLLEENSF 430
>BI308444 similar to GP|9294587|dbj contains similarity to unknown
protein~dbj|BAA91404.1~gene_id:MIG5.4 {Arabidopsis
thaliana}, partial (1%)
Length = 762
Score = 26.9 bits (58), Expect = 9.0
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = -1
Query: 99 KYCLVSVSNILTTT-CQYEALKYVS 122
K+C +SVS LT+T C EAL+Y S
Sbjct: 213 KFCKLSVSETLTSTNCGDEALRYSS 139
>BE324597
Length = 533
Score = 26.9 bits (58), Expect = 9.0
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -2
Query: 45 VLQEKIMRVPYGVNKDYFKYSLFLVFCNRITTSAVSAAALVARDKALLPVAPIYKYCL 102
VL KI+ + +K +F SL+L+F N + A ++ ++LP++ + Y L
Sbjct: 184 VLGPKILGLKDQFSKSHFLTSLWLIFTNLKCYKLIQVAYSLSFSLSILPMSS*FSYGL 11
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.334 0.143 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,926,341
Number of Sequences: 36976
Number of extensions: 148374
Number of successful extensions: 1556
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of query: 285
length of database: 9,014,727
effective HSP length: 95
effective length of query: 190
effective length of database: 5,502,007
effective search space: 1045381330
effective search space used: 1045381330
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC139841.2