Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139841.10 - phase: 0 
         (213 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC77240 homologue to GP|1370196|emb|CAA98175.1 RAB8D {Lotus japo...   381  e-106
TC77618 homologue to PIR|S57478|S57478 GTP-binding protein GTP13...   355  5e-99
TC77239 homologue to GP|1370196|emb|CAA98175.1 RAB8D {Lotus japo...   297  9e-98
TC85957 homologue to PIR|S57471|S57471 GTP-binding protein GTP6 ...   350  2e-97
TC85959 homologue to PIR|S57471|S57471 GTP-binding protein GTP6 ...   311  1e-95
TC79203 homologue to PIR|S41430|S41430 GTP-binding protein  ras-...   228  1e-60
TC77446 homologue to GP|303750|dbj|BAA02116.1| GTP-binding prote...   224  2e-59
TC77453 homologue to GP|303732|dbj|BAA02117.1| GTP-binding prote...   221  1e-58
TC86827 homologue to GP|303748|dbj|BAA02115.1| GTP-binding prote...   210  4e-55
AL385573 homologue to GP|11558647|em secretion related GTPase  (...   203  5e-53
TC77335 homologue to GP|1370176|emb|CAA98165.1 RAB2A {Lotus japo...   166  6e-42
TC85958 PIR|S57471|S57471 GTP-binding protein GTP6 - garden pea,...   166  8e-42
TC86480 homologue to SP|Q40193|R11C_LOTJA Ras-related protein Ra...   163  5e-41
TC87022 homologue to SP|O04486|RB1C_ARATH Ras-related protein Ra...   157  2e-39
TC88814 homologue to PIR|T06447|T06447 GTP-binding protein - gar...   154  2e-38
TC86724 homologue to PIR|T06445|T06445 GTP-binding protein - gar...   152  9e-38
TC84871 similar to GP|1370172|emb|CAA98163.1 RAB1X {Lotus japoni...   152  9e-38
TC90322 similar to GP|1370172|emb|CAA98163.1 RAB1X {Lotus japoni...   151  2e-37
TC87342 PIR|S41431|S41431 GTP-binding protein  ras-like - fava b...   150  3e-37
TC82103 similar to GP|1370144|emb|CAA98178.1 RAB11B {Lotus japon...   147  4e-36

>TC77240 homologue to GP|1370196|emb|CAA98175.1 RAB8D {Lotus japonicus},
           complete
          Length = 1148

 Score =  381 bits (978), Expect = e-106
 Identities = 192/197 (97%), Positives = 195/197 (98%)
 Frame = +1

Query: 17  ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
           +LL+  +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF
Sbjct: 274 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 453

Query: 77  RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
           RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR
Sbjct: 454 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 633

Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDNKAEPTTIKINQ 196
           AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDNKAEPTTIKINQ
Sbjct: 634 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDNKAEPTTIKINQ 813

Query: 197 DSATGSGQAAQKSACCG 213
           DSATGSGQAAQKSACCG
Sbjct: 814 DSATGSGQAAQKSACCG 864


>TC77618 homologue to PIR|S57478|S57478 GTP-binding protein GTP13 - garden
           pea, complete
          Length = 1136

 Score =  355 bits (912), Expect = 5e-99
 Identities = 181/198 (91%), Positives = 187/198 (94%), Gaps = 1/198 (0%)
 Frame = +2

Query: 17  ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
           +LL+  +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF
Sbjct: 269 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 448

Query: 77  RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
           RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR
Sbjct: 449 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 628

Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDNKAEPTTIKIN- 195
           AVPTSKGQALADEYGIKFFETSAKTN+NVEEVFFSIARDIKQRLADT +  EP +IKIN 
Sbjct: 629 AVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQRLADTVSSTEPQSIKINQ 808

Query: 196 QDSATGSGQAAQKSACCG 213
           QD A   GQAAQKSACCG
Sbjct: 809 QDQAANGGQAAQKSACCG 862


>TC77239 homologue to GP|1370196|emb|CAA98175.1 RAB8D {Lotus japonicus},
           partial (96%)
          Length = 816

 Score =  297 bits (760), Expect(2) = 9e-98
 Identities = 149/154 (96%), Positives = 152/154 (97%)
 Frame = +1

Query: 17  ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
           +LL+  +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF
Sbjct: 247 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 426

Query: 77  RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
           RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR
Sbjct: 427 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 606

Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF 170
           AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF
Sbjct: 607 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF 708



 Score = 77.0 bits (188), Expect(2) = 9e-98
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = +3

Query: 169 FFSIARDIKQRLADTDNKAEPTTIKINQDSATGSGQAA 206
           FFSIARDIKQRLADTDNKAEPTTIKINQDSATGSGQAA
Sbjct: 702 FFSIARDIKQRLADTDNKAEPTTIKINQDSATGSGQAA 815


>TC85957 homologue to PIR|S57471|S57471 GTP-binding protein GTP6 - garden
           pea, complete
          Length = 1148

 Score =  350 bits (899), Expect = 2e-97
 Identities = 175/198 (88%), Positives = 188/198 (94%), Gaps = 1/198 (0%)
 Frame = +3

Query: 17  ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
           +LL+  +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF
Sbjct: 258 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 437

Query: 77  RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
           RTITTAYYRGAMGILLVYDVTDE+SFNNI+NWIRNIEQHASDNVNKILVGNKADMDESKR
Sbjct: 438 RTITTAYYRGAMGILLVYDVTDESSFNNIKNWIRNIEQHASDNVNKILVGNKADMDESKR 617

Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDNKAEPTTIKINQ 196
           AVPTSKGQALADEYGIKFFETSAKTN+NV+EVFFSIARDIKQRLA++D+K EP T+KINQ
Sbjct: 618 AVPTSKGQALADEYGIKFFETSAKTNMNVDEVFFSIARDIKQRLAESDSKTEPQTLKINQ 797

Query: 197 -DSATGSGQAAQKSACCG 213
            D   GS QA+Q S+CCG
Sbjct: 798 PDQGAGSAQASQTSSCCG 851


>TC85959 homologue to PIR|S57471|S57471 GTP-binding protein GTP6 - garden
           pea, complete
          Length = 886

 Score =  311 bits (796), Expect(2) = 1e-95
 Identities = 156/163 (95%), Positives = 161/163 (98%)
 Frame = +3

Query: 17  ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
           +LL+  +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF
Sbjct: 123 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 302

Query: 77  RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
           RTITTAYYRGAMGILLVYDVTDE+SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR
Sbjct: 303 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 482

Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 179
           AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ+
Sbjct: 483 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQK 611



 Score = 56.2 bits (134), Expect(2) = 1e-95
 Identities = 27/37 (72%), Positives = 31/37 (82%), Gaps = 1/37 (2%)
 Frame = +1

Query: 178 QRLADTDNKAEPTTIKINQ-DSATGSGQAAQKSACCG 213
           +RLADTD+K+EP TIKINQ D   G+ QAAQKSACCG
Sbjct: 607 KRLADTDSKSEPQTIKINQPDQGAGAAQAAQKSACCG 717


>TC79203 homologue to PIR|S41430|S41430 GTP-binding protein  ras-like (clone
           vfa-ypt1) - fava bean, complete
          Length = 920

 Score =  228 bits (582), Expect = 1e-60
 Identities = 118/198 (59%), Positives = 148/198 (74%), Gaps = 2/198 (1%)
 Frame = +1

Query: 17  ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
           +LL+  +GVGKSCLLLRF+D S+  S+I+TIG+DFKIRT+E DGK IKLQIWDTAGQERF
Sbjct: 238 LLLIGDSGVGKSCLLLRFADDSYIDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 417

Query: 77  RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
           RTIT++YYRGA GI++VYDVTDE SFNN++ W+  I+++ASDNVNK+LVGNK D+  S+R
Sbjct: 418 RTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDL-TSER 594

Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA-DTDNKAEPTTIKIN 195
           AV     +A ADE GI F ETSAK + NVE+ F ++A  IK R+A    N A P T++I 
Sbjct: 595 AVSYDTAKAFADEIGIPFMETSAKDSTNVEQAFMAMASSIKDRMASQPTNNARPPTVQIR 774

Query: 196 QDSATGSGQ-AAQKSACC 212
                  GQ   QKS CC
Sbjct: 775 -------GQPVGQKSGCC 807


>TC77446 homologue to GP|303750|dbj|BAA02116.1| GTP-binding protein {Pisum
           sativum}, complete
          Length = 1080

 Score =  224 bits (571), Expect = 2e-59
 Identities = 111/197 (56%), Positives = 147/197 (74%), Gaps = 1/197 (0%)
 Frame = +3

Query: 17  ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
           +LL+  +GVGKSCLLLRF+D S+  S+I+TIG+DFKIRT+E DGK IKLQIWDTAGQERF
Sbjct: 147 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 326

Query: 77  RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
           RTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK+D+ + K+
Sbjct: 327 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLSD-KK 503

Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTD-NKAEPTTIKIN 195
            V +   +A ADE GI F ETSAK   NVE+ F ++A +IK R+A    N A P T++I 
Sbjct: 504 VVSSETAKAFADEIGIPFMETSAKNASNVEQAFMAMAAEIKNRMASQPANSARPATVQIR 683

Query: 196 QDSATGSGQAAQKSACC 212
                      QK+ CC
Sbjct: 684 GQPVN------QKAGCC 716


>TC77453 homologue to GP|303732|dbj|BAA02117.1| GTP-binding protein {Pisum
           sativum}, complete
          Length = 944

 Score =  221 bits (564), Expect = 1e-58
 Identities = 118/215 (54%), Positives = 154/215 (70%), Gaps = 3/215 (1%)
 Frame = +1

Query: 1   FVWNILGFTININYKLILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG 60
           F ++++    +  +KL LL+  +GVGKSCLLLRF+D S+  S+I+TIG+DFKIRT+E DG
Sbjct: 109 FTFSVMNPEYDYLFKL-LLIGDSGVGKSCLLLRFADDSYIDSYISTIGVDFKIRTVEQDG 285

Query: 61  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNV 120
           K IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTDE SFNN++ W+  I+++ASDNV
Sbjct: 286 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNV 465

Query: 121 NKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 180
           NK+LVGNK+D+  + RAV     +  AD+ GI F ETSAK   NVE  F ++A  IK R+
Sbjct: 466 NKLLVGNKSDL-TANRAVSYDTAKEFADQIGIPFMETSAKDATNVEGAFMAMAAAIKDRM 642

Query: 181 AD--TDNKAEPTTIKINQDSATGSGQ-AAQKSACC 212
           A   + N A P T++I        GQ   QKS CC
Sbjct: 643 ASQPSANNARPPTVQIR-------GQPVGQKSGCC 726


>TC86827 homologue to GP|303748|dbj|BAA02115.1| GTP-binding protein {Pisum
           sativum}, complete
          Length = 917

 Score =  210 bits (534), Expect = 4e-55
 Identities = 104/198 (52%), Positives = 147/198 (73%), Gaps = 1/198 (0%)
 Frame = +2

Query: 17  ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
           +L++  + VGKSCLLLRF+D S+  ++I+TIG+DFKIRT+EL+GK  KLQIWDTAGQERF
Sbjct: 155 LLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFKIRTVELEGKTAKLQIWDTAGQERF 334

Query: 77  RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
           RTIT++YYRGA GI++VYDVTD  SFNN++ W+  I+++A+ +V+K+LVGNK D+ ++K 
Sbjct: 335 RTITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDLTDNK- 511

Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDNKAEPTTIKINQ 196
            V T   +A ADE GI F ETSAK ++NVE+ F ++A +IK ++      ++PT  K   
Sbjct: 512 LVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMG-----SQPTGSKSAA 676

Query: 197 DSATGSGQAAQKSA-CCG 213
           +S    GQ  Q++  CCG
Sbjct: 677 ESVQMKGQPIQQNTNCCG 730


>AL385573 homologue to GP|11558647|em secretion related GTPase  (SrgA)
           {Aspergillus niger}, partial (61%)
          Length = 463

 Score =  203 bits (516), Expect = 5e-53
 Identities = 101/119 (84%), Positives = 106/119 (88%)
 Frame = +2

Query: 17  ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
           +LL+  +GVGKSCLLLRFSD SFT SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF
Sbjct: 98  LLLIGDSGVGKSCLLLRFSDDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 277

Query: 77  RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 135
           RTITTAYYRGAMGILLVYDVTDE SF NIRNW  NIEQHAS+ VNKIL+GNK D  E K
Sbjct: 278 RTITTAYYRGAMGILLVYDVTDERSFKNIRNWFSNIEQHASEGVNKILIGNKCDWVEKK 454


>TC77335 homologue to GP|1370176|emb|CAA98165.1 RAB2A {Lotus japonicus},
           complete
          Length = 1121

 Score =  166 bits (420), Expect = 6e-42
 Identities = 91/196 (46%), Positives = 119/196 (60%), Gaps = 7/196 (3%)
 Frame = +3

Query: 24  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 83
           GVGKSCLLL+F+D  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +Y
Sbjct: 276 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSY 455

Query: 84  YRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG 143
           YRGA G LLVYD+T   +FN++ +W+ +  QHA+ N+  +L+GNK D+   +RAV T +G
Sbjct: 456 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL-AHRRAVSTEEG 632

Query: 144 QALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDNKAEPTTIKINQDSATG 201
           +  A E G+ F E SAKT  NVEE F   A  I +++ D   D   E   IK+      G
Sbjct: 633 EQFAKENGLIFMEASAKTAQNVEEAFIKTAGTIYKKIQDGVFDVSNESYGIKVGYGGIPG 812

Query: 202 -----SGQAAQKSACC 212
                 G +A    CC
Sbjct: 813 PSGGRDGPSAAGGGCC 860


>TC85958 PIR|S57471|S57471 GTP-binding protein GTP6 - garden pea, partial
           (59%)
          Length = 646

 Score =  166 bits (419), Expect = 8e-42
 Identities = 88/113 (77%), Positives = 94/113 (82%), Gaps = 1/113 (0%)
 Frame = +2

Query: 17  ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
           +LL+  +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF
Sbjct: 290 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 469

Query: 77  RTITTAYYRGAMGILLVYDVTDEASFNNIRNW-IRNIEQHASDNVNKILVGNK 128
           RTITTAYYRGAMGILLVYDVTDE  F   +      +    SDNVNKIL G +
Sbjct: 470 RTITTAYYRGAMGILLVYDVTDEVVF*QHQELDSATLSSMLSDNVNKILGGEQ 628



 Score = 34.7 bits (78), Expect = 0.028
 Identities = 21/38 (55%), Positives = 24/38 (62%), Gaps = 4/38 (10%)
 Frame = +3

Query: 100 ASFNNIRNWIRNIEQHAS----DNVNKILVGNKADMDE 133
           +SFNNI+NWIR   QH +        K  VGNKADMDE
Sbjct: 540 SSFNNIKNWIR---QH*AACFLTMSTKY*VGNKADMDE 644


>TC86480 homologue to SP|Q40193|R11C_LOTJA Ras-related protein Rab11C.
           {Lotus japonicus}, complete
          Length = 1173

 Score =  163 bits (412), Expect = 5e-41
 Identities = 87/206 (42%), Positives = 124/206 (59%), Gaps = 10/206 (4%)
 Frame = +3

Query: 17  ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
           I+L+  +GVGKS +L RF+   F     +TIG++F  RT++++GK +K QIWDTAGQER+
Sbjct: 237 IVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY 416

Query: 77  RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
           R IT+AYYRGA+G LLVYD+T   +F+N+  W+R +  HA  N+  ++ GNK+D++   R
Sbjct: 417 RAITSAYYRGAVGALLVYDITKRQTFDNVNRWLRELRDHADSNIVIMMAGNKSDLNH-LR 593

Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI----------KQRLADTDNK 186
           AV    GQALA++ G+ F ETSA    N+E+ F +I  +I           Q  A T   
Sbjct: 594 AVSEDDGQALAEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEAAGTSLP 773

Query: 187 AEPTTIKINQDSATGSGQAAQKSACC 212
            + TTI +   SA        K  CC
Sbjct: 774 GQGTTINVADSSAN------TKRGCC 833


>TC87022 homologue to SP|O04486|RB1C_ARATH Ras-related protein Rab11C.
           [Mouse-ear cress] {Arabidopsis thaliana}, partial (81%)
          Length = 1014

 Score =  157 bits (398), Expect = 2e-39
 Identities = 82/201 (40%), Positives = 123/201 (60%), Gaps = 5/201 (2%)
 Frame = +2

Query: 17  ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
           ++L+  +GVGKS LL RF+   F     +TIG++F  RT++++G+ +K QIWDTAGQER+
Sbjct: 95  VVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERY 274

Query: 77  RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
           R IT+AYYRGA+G LLVYDVT   +F+N+  W++ +  HA  N+  +L+GNK D+ +  R
Sbjct: 275 RAITSAYYRGALGALLVYDVTKPTTFDNVTRWLKELRDHADANIVIMLIGNKTDL-KHLR 451

Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI-----KQRLADTDNKAEPTT 191
           AV T   Q+ A++ G+ F ETSA    NVE+ F +   +I     K+ L+  +  A    
Sbjct: 452 AVATEDAQSYAEKEGLSFIETSALEATNVEKAFQTTLGEIYRIISKKSLSTANEPAAAAN 631

Query: 192 IKINQDSATGSGQAAQKSACC 212
           IK  +  A G  +    +  C
Sbjct: 632 IKEGKTIAIGGSETTNTNKPC 694


>TC88814 homologue to PIR|T06447|T06447 GTP-binding protein - garden pea,
           complete
          Length = 1183

 Score =  154 bits (390), Expect = 2e-38
 Identities = 88/204 (43%), Positives = 119/204 (58%), Gaps = 8/204 (3%)
 Frame = +3

Query: 17  ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
           ++L+  +GVGKS LL RF+   F+    +TIG++F  R+I +D K +K QIWDTAGQER+
Sbjct: 330 VVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERY 509

Query: 77  RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
           R IT+AYYRGA+G LLVYDVT   +F N+  W++ +  H   N+  +LVGNKAD+    R
Sbjct: 510 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVVMLVGNKADL-RHLR 686

Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI-----KQRLADTDNKAEPTT 191
           AV T    A A+     F ETSA  ++NVE  F  +   I     K+ L   D   +PT 
Sbjct: 687 AVSTEDSTAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSKKALEIGD---DPTA 857

Query: 192 IKINQDSATGSG---QAAQKSACC 212
           +   Q    GS     A +KS CC
Sbjct: 858 LPKGQTIDVGSRDDVSAVKKSGCC 929


>TC86724 homologue to PIR|T06445|T06445 GTP-binding protein - garden pea,
           complete
          Length = 1037

 Score =  152 bits (384), Expect = 9e-38
 Identities = 81/205 (39%), Positives = 125/205 (60%), Gaps = 9/205 (4%)
 Frame = +3

Query: 17  ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
           ++L+  + VGKS +L RFS   F+    +TIG++F+ RT+ +D K +K QIWDTAGQER+
Sbjct: 231 VVLIGDSAVGKSQILARFSRNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERY 410

Query: 77  RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
           R +T+AYYRGA+G +LVYD+T   +F++I  W+  +  HA  N+  ILVGNK+D+ E++R
Sbjct: 411 RAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILVGNKSDL-ENQR 587

Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI-----KQRLADTDNKAEPTT 191
            VPT   +  A++ G+ F ETSA    NVE  F ++  +I     K+ LA  +++    +
Sbjct: 588 DVPTEDAKEFAEKEGLFFLETSALQATNVEASFMTVLTEIYNIVNKKNLAADESQGNGNS 767

Query: 192 IKINQDSATGSGQA----AQKSACC 212
             +        G A    A+ + CC
Sbjct: 768 ASLLGQKIIIPGPAQEIPAKSNMCC 842


>TC84871 similar to GP|1370172|emb|CAA98163.1 RAB1X {Lotus japonicus},
           partial (87%)
          Length = 727

 Score =  152 bits (384), Expect = 9e-38
 Identities = 86/170 (50%), Positives = 118/170 (68%), Gaps = 2/170 (1%)
 Frame = +3

Query: 11  NINYKLILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 70
           +I++K ILL+  + VGKS LL+ F  GS       TIG+DFKI+ + + GKR+KL IWDT
Sbjct: 129 DISFK-ILLIGDSAVGKSSLLVSFISGSVEDP-APTIGVDFKIKLLTVGGKRLKLTIWDT 302

Query: 71  AGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRN-WIRNIEQHASD-NVNKILVGNK 128
           AGQERFRT+T++YYRGA GI+LVYDVT   +F N+   W + +E ++++ +  K+LVGNK
Sbjct: 303 AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSEVWSKEVELYSTNQDCMKMLVGNK 482

Query: 129 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 178
            D  ES+R V T +G ALA E+G  FFE SAKT  NV++ F  +A  I +
Sbjct: 483 VDR-ESERTVSTEEGLALAKEFGCSFFECSAKTRENVDKCFEELALKIME 629


>TC90322 similar to GP|1370172|emb|CAA98163.1 RAB1X {Lotus japonicus},
           partial (98%)
          Length = 1054

 Score =  151 bits (382), Expect = 2e-37
 Identities = 83/164 (50%), Positives = 110/164 (66%), Gaps = 2/164 (1%)
 Frame = +1

Query: 17  ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
           ILL+  +GVGKSCLL+ F   S       TIG+DFKI+ + + GKR+KL IWDTAGQERF
Sbjct: 298 ILLIGDSGVGKSCLLVTFISNSSVEDLSPTIGVDFKIKMLTVGGKRLKLTIWDTAGQERF 477

Query: 77  RTITTAYYRGAMGILLVYDVTDEASFNNIRN-WIRNIEQHASD-NVNKILVGNKADMDES 134
           RT+T++YYRGA GI+LVYDVT   +F N+   W + +E ++++    K+LVGNK D D S
Sbjct: 478 RTLTSSYYRGAQGIILVYDVTRRETFTNLSEVWSKELELYSTNQECVKMLVGNKVDKD-S 654

Query: 135 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 178
           +RAV   +G +LA E G    E SAKT  NVE+ F  +A  I +
Sbjct: 655 ERAVSREEGLSLAKELGCLLLECSAKTRENVEKCFEELALKIME 786


>TC87342 PIR|S41431|S41431 GTP-binding protein  ras-like - fava bean,
           complete
          Length = 995

 Score =  150 bits (379), Expect = 3e-37
 Identities = 82/201 (40%), Positives = 115/201 (56%), Gaps = 5/201 (2%)
 Frame = +3

Query: 17  ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
           ++L+  +GVGKS LL RF+   F     +TIG++F  RT+ +D K IK QIWDTAGQER+
Sbjct: 120 VVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSKVIKAQIWDTAGQERY 299

Query: 77  RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
           R IT+AYYRGA+G LLVYDVT  A+F N+  W++ +  H   N+  +LVGNKAD+     
Sbjct: 300 RAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELRNHTDSNIVVMLVGNKADL-RHLV 476

Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI-----KQRLADTDNKAEPTT 191
           AV T  G++ A++  + F ETSA    NVE  F  +   I     K+ +   +N      
Sbjct: 477 AVSTEDGKSYAEKESLYFMETSALEATNVENAFAEVLTQIYRIVSKKAVEGAENGNASVP 656

Query: 192 IKINQDSATGSGQAAQKSACC 212
            K  +        A ++  CC
Sbjct: 657 AKGEKIDLKNDVSALKRVGCC 719


>TC82103 similar to GP|1370144|emb|CAA98178.1 RAB11B {Lotus japonicus},
           partial (80%)
          Length = 1513

 Score =  147 bits (370), Expect = 4e-36
 Identities = 70/160 (43%), Positives = 107/160 (66%)
 Frame = +1

Query: 17  ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
           ++++  + VGK+ +L RFS   F     +TIG++F+ RT+ ++GK IK QIWDTAGQER+
Sbjct: 223 VVVIGDSAVGKTQILSRFSKNEFCFDSKSTIGVEFQTRTVTINGKVIKAQIWDTAGQERY 402

Query: 77  RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
           R +T+AYYRGA+G +LVYD+T   SF+++  W+  +  HA +++  +LVGNK D+ +  R
Sbjct: 403 RAVTSAYYRGALGAMLVYDITKRQSFDHVAKWVEELRAHADNSIVIMLVGNKGDLVD-LR 579

Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 176
            VPT      A++ G+ F ETSA T +NVE  F  +  +I
Sbjct: 580 MVPTEDAVEFAEDQGLFFSETSALTGVNVEGAFMKLLEEI 699


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.321    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,825,536
Number of Sequences: 36976
Number of extensions: 66854
Number of successful extensions: 475
Number of sequences better than 10.0: 114
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of query: 213
length of database: 9,014,727
effective HSP length: 92
effective length of query: 121
effective length of database: 5,612,935
effective search space: 679165135
effective search space used: 679165135
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)


Medicago: description of AC139841.10