BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139748.7 + phase: 0 /pseudo
(144 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF635063 weakly similar to PIR|F84486|F84 probable retroelement ... 222 4e-59
BG646342 weakly similar to PIR|F84486|F84 probable retroelement ... 146 3e-36
TC78699 weakly similar to PIR|G96761|G96761 probable MAP kinase ... 31 0.20
TC85398 similar to SP|O23787|THI4_CITSI Thiazole biosynthetic en... 29 0.57
BQ138414 homologue to SP|P42041|DHAL Aldehyde dehydrogenase (EC ... 27 2.8
BQ140761 weakly similar to GP|18076245|emb phosphophoryn {Rattus... 27 2.8
BQ150838 27 3.7
BQ144244 weakly similar to GP|4140029|dbj alpha 1 type I collage... 26 4.8
AW256569 similar to GP|10177426|dbj GATA-binding transcription f... 26 4.8
TC91027 similar to GP|14517502|gb|AAK62641.1 At2g38310/T19C21.20... 26 4.8
TC76596 homologue to SP|P33278|SUI1_ORYSA Protein translation fa... 26 4.8
TC83664 similar to GP|9280288|dbj|BAB01743.1 receptor protein ki... 26 4.8
TC78586 similar to PIR|T01041|T01041 hypothetical protein YUP8H1... 26 4.8
TC88266 weakly similar to GP|14423468|gb|AAK62416.1 Unknown prot... 26 6.3
TC88046 similar to GP|7839365|gb|AAF70243.1| S-adenosyl-L-methio... 26 6.3
TC92243 similar to PIR|T06661|T06661 hypothetical protein T6G15.... 26 6.3
CB892914 weakly similar to PIR|H86406|H86 probable serine carbox... 26 6.3
BF640339 weakly similar to PIR|T47801|T47 hypothetical protein F... 25 8.2
TC82899 similar to PIR|T04606|T04606 protein kinase homolog F20O... 25 8.2
TC83695 similar to GP|6580688|emb|CAB63486.1 proline-rich protei... 25 8.2
>BF635063 weakly similar to PIR|F84486|F84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(4%)
Length = 677
Score = 222 bits (566), Expect = 4e-59
Identities = 112/137 (81%), Positives = 118/137 (85%)
Frame = -3
Query: 4 GILRSLPEITILDYER*RWKRC*YNRSVRKL*RVKVRYRSPCHERRRPRWWTRPRVPLSC 63
GILRSLPEITIL Y R*RWKRC*Y++SVRKL*RVK RY+SPCHERRRPRW TRP VPLSC
Sbjct: 555 GILRSLPEITILGYGR*RWKRC*YSKSVRKL*RVKFRYQSPCHERRRPRW*TRPGVPLSC 376
Query: 64 ASGIKFREKQQRNEPRHRCGQSSNICI*QSLWLIGKS*SNNFTHSRW*SQRLSWSYLWSS 123
ASGIKF EK QRNEPRH+CGQS N+CI*QSLWLIG S*SNN THS W SQR SWS L SS
Sbjct: 375 ASGIKF*EK*QRNEPRHQCGQSCNLCI*QSLWLIGNS*SNNSTHSGWWSQRPSWSNLRSS 196
Query: 124 TKSLVIWRTLSCVLRMR 140
TKSL+ WR L C LRMR
Sbjct: 195 TKSLMTWRILRCNLRMR 145
>BG646342 weakly similar to PIR|F84486|F84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(4%)
Length = 599
Score = 146 bits (368), Expect = 3e-36
Identities = 75/88 (85%), Positives = 77/88 (87%)
Frame = +3
Query: 57 PRVPLSCASGIKFREKQQRNEPRHRCGQSSNICI*QSLWLIGKS*SNNFTHSRW*SQRLS 116
P VPLSCASGIKF EK QRN+PRHRC QS NICI*QSLWLIG S*SNNF HSRW*SQR S
Sbjct: 3 PGVPLSCASGIKF*EK*QRNQPRHRCVQSWNICI*QSLWLIGNS*SNNFIHSRW*SQRPS 182
Query: 117 WSYLWSSTKSLVIWRTLSCVLRMRVL*W 144
SYLWSSTKSLVI RTL C+LRMRVL*W
Sbjct: 183 RSYLWSSTKSLVI*RTLRCILRMRVL*W 266
>TC78699 weakly similar to PIR|G96761|G96761 probable MAP kinase T9L24.32
[imported] - Arabidopsis thaliana, partial (71%)
Length = 1119
Score = 30.8 bits (68), Expect = 0.20
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 45 CHERRRPRWWTRPRVPLSCASGIKFREKQQRNE 77
CH R+R RWW + RV C ++E+ Q NE
Sbjct: 183 CHHRQRRRWWLKWRVVCRC-----WQEEGQGNE 100
>TC85398 similar to SP|O23787|THI4_CITSI Thiazole biosynthetic enzyme
chloroplast precursor. [Sweet orange] {Citrus sinensis},
partial (84%)
Length = 1514
Score = 29.3 bits (64), Expect = 0.57
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 19 R*RWKRC*YNRSVRKL*RVKVRYRSPCHER--RRPRWWTRPRVP 60
R R RC + RS +L ++ CH R R+P WW R P
Sbjct: 346 RRRHSRCRFRRSFLRLRIIQKPKHQYCHHRTIRQPWWWCMARWP 477
>BQ138414 homologue to SP|P42041|DHAL Aldehyde dehydrogenase (EC 1.2.1.3)
(ALDDH) (Allergen Alt a 10) (Alt a X). {Alternaria
alternata}, partial (44%)
Length = 669
Score = 26.9 bits (58), Expect = 2.8
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = -3
Query: 19 R*RWKRC*YNRSVRKL*RVKVRYRSPCHER--RRPRWWTRPRVPLSC 63
R*RW+R * R SPC R RWW RP P C
Sbjct: 628 R*RWRRW*------------AR*SSPCRPCACRLSRWWHRPSCPPQC 524
>BQ140761 weakly similar to GP|18076245|emb phosphophoryn {Rattus
norvegicus}, partial (9%)
Length = 620
Score = 26.9 bits (58), Expect = 2.8
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Frame = -2
Query: 21 RWKRC*------YNRSVRKL*RVKVRYRSPCHERRRPRWWTRPRVPLSCA 64
RW+RC Y + R R R P H RP WW R R C+
Sbjct: 313 RWRRCPSRCRHCYRCCPSRCCRCSSRLR-PWHRTGRPAWWPRRRSL*GCS 167
>BQ150838
Length = 916
Score = 26.6 bits (57), Expect = 3.7
Identities = 20/53 (37%), Positives = 24/53 (44%)
Frame = +3
Query: 29 RSVRKL*RVKVRYRSPCHERRRPRWWTRPRVPLSCASGIKFREKQQRNEPRHR 81
RS R+ RVK R PC E R W+ P S I F K +R E R +
Sbjct: 264 RSGRRGFRVKTTARIPCMEGIRVFWFVHFYSPYSIIMYILF--KSRRRETRFK 416
>BQ144244 weakly similar to GP|4140029|dbj alpha 1 type I collagen {Cynops
pyrrhogaster}, partial (2%)
Length = 1042
Score = 26.2 bits (56), Expect = 4.8
Identities = 17/61 (27%), Positives = 30/61 (48%)
Frame = -3
Query: 79 RHRCGQSSNICI*QSLWLIGKS*SNNFTHSRW*SQRLSWSYLWSSTKSLVIWRTLSCVLR 138
RHR G +C+ + G + S TH R + R + + + + S +IW + C+LR
Sbjct: 788 RHRVG----LCVVHRICGDGTTISIGHTHLRLRADRRATTSSRAFSSSRLIWVAMLCILR 621
Query: 139 M 139
+
Sbjct: 620 V 618
>AW256569 similar to GP|10177426|dbj GATA-binding transcription factor-like
protein {Arabidopsis thaliana}, partial (20%)
Length = 613
Score = 26.2 bits (56), Expect = 4.8
Identities = 14/42 (33%), Positives = 21/42 (49%), Gaps = 2/42 (4%)
Frame = -3
Query: 43 SPCHERRRPRWWTRPRVP--LSCASGIKFREKQQRNEPRHRC 82
S CH ++ P+W P P L A G++F+ + E R C
Sbjct: 500 SHCHVQKTPQWRAGPLGPKTLCNACGVRFKSGRLFPEYRPAC 375
>TC91027 similar to GP|14517502|gb|AAK62641.1 At2g38310/T19C21.20
{Arabidopsis thaliana}, partial (55%)
Length = 682
Score = 26.2 bits (56), Expect = 4.8
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +3
Query: 7 RSLPEITIL----DYER*RWKRC*YNRSVRKL*RVK-VRYRSPCHERRRPR 52
RSLP+ +L Y R R R S+R+ ++ +R + PCH RRR R
Sbjct: 354 RSLPQPVLLRRHPTYRRTRLHRLVRRPSLRQSTSLQTLRQKLPCHPRRRQR 506
>TC76596 homologue to SP|P33278|SUI1_ORYSA Protein translation factor SUI1
homolog (GOS2 protein). [Rice] {Oryza sativa}, partial
(74%)
Length = 1573
Score = 26.2 bits (56), Expect = 4.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 116 SWSYLWSSTKSLVIWRTLSCVL 137
SW Y++ + LV+W+ C+L
Sbjct: 309 SWVYIYVIVEFLVVWKYFPCIL 374
>TC83664 similar to GP|9280288|dbj|BAB01743.1 receptor protein kinase
{Arabidopsis thaliana}, partial (3%)
Length = 1029
Score = 26.2 bits (56), Expect = 4.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 103 NNFTHSRW*SQRLSWSYLWSSTKSLVIWRTLSCVL 137
NNF HS S ++ WS + S W+ ++C L
Sbjct: 148 NNFKHSNIISDPTNFLSNWSLSSSPCFWQGITCSL 252
>TC78586 similar to PIR|T01041|T01041 hypothetical protein YUP8H12R.24 -
Arabidopsis thaliana, partial (38%)
Length = 2831
Score = 26.2 bits (56), Expect = 4.8
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 54 WTRPRVPLSCASGIKFREKQQRNEPRHR 81
W RP+ SC + I+F+ + +N+ R
Sbjct: 2495 WIRPQNHFSCMNNIRFKRRNGQNQVNDR 2578
>TC88266 weakly similar to GP|14423468|gb|AAK62416.1 Unknown protein
{Arabidopsis thaliana}, partial (43%)
Length = 757
Score = 25.8 bits (55), Expect = 6.3
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 48 RRRPRWWTRPRVPLSCASGIKFR 70
R R RWW R RV GIK R
Sbjct: 220 RYRLRWWNRHRVGAFSELGIKLR 152
>TC88046 similar to GP|7839365|gb|AAF70243.1| S-adenosyl-L-methionine
Mg-protoporphyrin IX methyltranserase {Nicotiana
tabacum}, partial (84%)
Length = 1213
Score = 25.8 bits (55), Expect = 6.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 27 YNRSVRKL*RVKVRYRSPCHERRRPRWWTRPRVP 60
+NR+ R+ R R+ S H+RR RW R +P
Sbjct: 143 FNRNSRRRYRRHRRHNSRRHQRRLRRWPHRTSLP 244
>TC92243 similar to PIR|T06661|T06661 hypothetical protein T6G15.140 -
Arabidopsis thaliana, partial (43%)
Length = 723
Score = 25.8 bits (55), Expect = 6.3
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +2
Query: 117 WSYLWSSTKSL--VIWRTLSCVLRMRVL*W 144
WSY W+ T ++ WR C L R W
Sbjct: 272 WSYCWTLTSNMHCYCWRITPC*LHFRKTGW 361
>CB892914 weakly similar to PIR|H86406|H86 probable serine carboxypeptidase
II [imported] - Arabidopsis thaliana, partial (37%)
Length = 589
Score = 25.8 bits (55), Expect = 6.3
Identities = 12/29 (41%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Frame = +3
Query: 115 LSW-SYLWSSTKSLVIWRTLSCVLRMRVL 142
L W S LW + + + WRT S ++ +RVL
Sbjct: 216 LQWVSVLWRTLTAGIEWRTCSTLILLRVL 302
>BF640339 weakly similar to PIR|T47801|T47 hypothetical protein F24G16.40 -
Arabidopsis thaliana, partial (4%)
Length = 423
Score = 25.4 bits (54), Expect = 8.2
Identities = 11/37 (29%), Positives = 19/37 (50%)
Frame = +1
Query: 52 RWWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNI 88
RW TR +SC +FR +P+H G ++++
Sbjct: 220 RWITRH---ISCGRNARFRRSIHNRKPKHTNGYTNSL 321
>TC82899 similar to PIR|T04606|T04606 protein kinase homolog F20O9.40 -
Arabidopsis thaliana, partial (18%)
Length = 644
Score = 25.4 bits (54), Expect = 8.2
Identities = 15/46 (32%), Positives = 23/46 (49%)
Frame = +1
Query: 45 CHERRRPRWWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNICI 90
C E + W R RV + ASGI + + E HR ++SN+ +
Sbjct: 49 CEETKLLNWEERIRVLENVASGILYLHEGWDFEVLHRDIKASNVLL 186
>TC83695 similar to GP|6580688|emb|CAB63486.1 proline-rich protein {Pisum
sativum}, partial (11%)
Length = 484
Score = 25.4 bits (54), Expect = 8.2
Identities = 10/16 (62%), Positives = 13/16 (80%)
Frame = -2
Query: 127 LVIWRTLSCVLRMRVL 142
L+IWRT S + +MRVL
Sbjct: 468 LIIWRTKSSIXQMRVL 421
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.350 0.149 0.585
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,378,553
Number of Sequences: 36976
Number of extensions: 114480
Number of successful extensions: 1218
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of query: 144
length of database: 9,014,727
effective HSP length: 87
effective length of query: 57
effective length of database: 5,797,815
effective search space: 330475455
effective search space used: 330475455
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 53 (25.0 bits)
Medicago: description of AC139748.7