TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139748.4 + phase: 0 /pseudo
         (36 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC91039 similar to PIR|C96640|C96640 hypothetical protein T25B24...    35  0.005
BG647163 similar to GP|9757943|dbj emb|CAB72466.1~gene_id:MJC20....    33  0.025
TC86332 similar to GP|7528276|gb|AAF63205.1| AP2-related transcr...    28  1.0
TC90574 weakly similar to GP|8886935|gb|AAF80621.1| F2D10.27 {Ar...    25  8.8

>TC91039 similar to PIR|C96640|C96640 hypothetical protein T25B24.14
           [imported] - Arabidopsis thaliana, partial (4%)
          Length = 732

 Score = 35.4 bits (80), Expect = 0.005
 Identities = 13/24 (54%), Positives = 18/24 (74%)
 Frame = +1

Query: 3   LPNRIKNNPKYYPWFKNCIGAIDG 26
           +P  I N+ +Y P+FK+CIG IDG
Sbjct: 574 IPLHISNDERYMPYFKDCIGCIDG 645


>BG647163 similar to GP|9757943|dbj emb|CAB72466.1~gene_id:MJC20.8~similar to
           unknown protein {Arabidopsis thaliana}, partial (51%)
          Length = 744

 Score = 33.1 bits (74), Expect = 0.025
 Identities = 10/26 (38%), Positives = 21/26 (80%)
 Frame = +3

Query: 2   ELPNRIKNNPKYYPWFKNCIGAIDGL 27
           ++ + I  + +++P+FK+C+GAIDG+
Sbjct: 342 DVASMIAEDDRFFPYFKDCVGAIDGI 419


>TC86332 similar to GP|7528276|gb|AAF63205.1| AP2-related transcription factor
            {Mesembryanthemum crystallinum}, partial (49%)
          Length = 1349

 Score = 27.7 bits (60), Expect = 1.0
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -2

Query: 14   YPWFKNCIGAIDGLL 28
            +PWF+NC+G  +G++
Sbjct: 1075 FPWFQNCVGTKEGIV 1031


>TC90574 weakly similar to GP|8886935|gb|AAF80621.1| F2D10.27 {Arabidopsis
           thaliana}, partial (19%)
          Length = 649

 Score = 24.6 bits (52), Expect = 8.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 5   NRIKNNPKYYPWFKNCI 21
           N + NNP+ Y W   CI
Sbjct: 642 NFVYNNPRGYSWINKCI 592


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.324    0.146    0.491 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,671,261
Number of Sequences: 36976
Number of extensions: 14124
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of query: 36
length of database: 9,014,727
effective HSP length: 12
effective length of query: 24
effective length of database: 8,571,015
effective search space: 205704360
effective search space used: 205704360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)