BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139747.6 + phase: 0 /pseudo
(1770 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis... 160 5e-39
CB065285 weakly similar to PIR|A84500|A84 probable retroelement ... 116 9e-26
TC79555 homologue to GP|10567859|gb|AAG18593.1 L8019.5 {Leishman... 45 2e-04
BE124481 41 0.005
TC89839 homologue to SP|P23466|CYAA_SACKL Adenylate cyclase (EC ... 40 0.006
TC76413 similar to GP|3461820|gb|AAC32914.1| unknown protein {Ar... 37 0.052
BQ750934 similar to PIR|T19673|T19 hypothetical protein C33B4.3 ... 35 0.20
BE942785 33 0.75
CA859831 weakly similar to GP|13436089|gb| Unknown (protein for ... 33 0.98
AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thalia... 33 0.98
BQ751419 weakly similar to GP|21629340|gb L509.2 {Leishmania maj... 33 1.3
TC85774 similar to GP|9759129|dbj|BAB09614.1 gb|AAF26981.1~gene_... 33 1.3
TC79938 similar to GP|17933299|gb|AAL48232.1 AT4g17800/dl4935c {... 33 1.3
TC77245 similar to GP|6630556|gb|AAF19575.1| putative alpha-L-ar... 32 1.7
BF638002 weakly similar to GP|20260150|gb strong similarity to n... 32 2.9
CB892255 32 2.9
TC80366 similar to GP|13877617|gb|AAK43886.1 protein kinase-like... 31 3.7
BQ751748 similar to PIR|T47216|T47 probable V-ATPase 20K chain ... 31 3.7
BQ751327 weakly similar to SP|P43076|PHR1 PH responsive protein ... 31 3.7
AL367832 weakly similar to GP|14091845|gb Putative retroelement ... 31 4.9
>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
chromosome II BAC F26H6; putative retroelement pol
polyprotein, partial (1%)
Length = 636
Score = 160 bits (404), Expect = 5e-39
Identities = 91/167 (54%), Positives = 115/167 (68%)
Frame = -1
Query: 1090 ENLLCFSLGCQASPSLYD*SYNLVDIQDGSYQVHI*EASFNWKDCSLADVIVRV*YRVSH 1149
E++LC SLGCQA PSLYD*S+ L I +GS QVHI*EA F+ KDC++AD + +*YRV
Sbjct: 636 EDMLCSSLGCQAPPSLYD*SHYLAGI*NGSNQVHI*EARFDRKDCTVADATIGI*YRVPF 457
Query: 1150 SESSQR*HLGRTFGSSTNRRLSTNQIRLPR*RSYVSKSKRL*RTSVR*RS*S*IRMGFDI 1209
E + R + + GS T RLST Q+ L *R YVSK +RL*R ++R RS*S +GFDI
Sbjct: 456 PEGN*RQYSC*SLGSPTT*RLSTYQV*LS**RDYVSKDERL*RATIRRRS*SRFSVGFDI 277
Query: 1210 *WSC*CLWKWNWCGTHYP*GYSHPFYCKVTF*LHKQHRRVRSLHHGY 1256
*W C C+ + + T Y * SHPF+ K *LH+QHR +RSLHHG+
Sbjct: 276 *WGCQCIRQRHRGSTPYS*RCSHPFHSKTPV*LHEQHR*IRSLHHGH 136
Score = 35.4 bits (80), Expect = 0.20
Identities = 17/24 (70%), Positives = 21/24 (86%)
Frame = +1
Query: 1055 GLCFGSTR*NRKERARYLLFE*EV 1078
GLC +TR*NRK+RAR+LLF+ EV
Sbjct: 34 GLCARTTR*NRKKRARHLLFKQEV 105
>CB065285 weakly similar to PIR|A84500|A84 probable retroelement gag/pol
polyprotein [imported] - Arabidopsis thaliana, partial
(2%)
Length = 592
Score = 116 bits (290), Expect = 9e-26
Identities = 74/170 (43%), Positives = 93/170 (54%)
Frame = -1
Query: 1186 KSKRL*RTSVR*RS*S*IRMGFDI*WSC*CLWKWNWCGTHYP*GYSHPFYCKVTF*LHKQ 1245
K KRL RT *RS S +MGF +*W C CLW NW P G HPFY + ++KQ
Sbjct: 592 KIKRLRRTVDW*RSRSQ*QMGFSL*WCCQCLW*RNWSSHCIPAGALHPFYRPDSVRMYKQ 413
Query: 1246 HRRVRSLHHGYRGSHRFEDQENCHLWRFRSCD*PDQRRMGNSSSWIDSLQRLCKAFADFL 1305
+ V S++ RGS+ E+Q HLWRF +C PDQ MG+ DSL RLC+AFAD
Sbjct: 412 YG*V*SMYLWDRGSN*HENQTPRHLWRFCTCHQPDQG*MGDPPCQSDSLPRLCEAFADLF 233
Query: 1306 QQSRVTSCAPR*ESNGRCFSYSILNDQCEWSQYCASNQCPISRPTCLCVC 1355
+S + E NG C YSIL+ + + CA+NQ T CVC
Sbjct: 232 YKS*AAPYSS*REPNG*CSGYSILHVSSKPLE*CANNQSATP*KTFTCVC 83
>TC79555 homologue to GP|10567859|gb|AAG18593.1 L8019.5 {Leishmania major},
partial (1%)
Length = 1410
Score = 45.1 bits (105), Expect = 2e-04
Identities = 32/92 (34%), Positives = 41/92 (43%), Gaps = 3/92 (3%)
Frame = +2
Query: 3 PSTTILPPTTI---PTKTTATTPSSGSSQSAESKATI*PLANDLWSIAPFFTCTESGPNN 59
P+TT PP T PT+T + +PSS + S S T PL + PFF G +
Sbjct: 536 PATTTRPPPTSKPSPTQTPSRSPSSARTPSTSSTPTRAPLLSSPPPPPPFFPARRPGTRS 715
Query: 60 TTSSHSRPSPTLVPSGPSLYLPSRGTRPRCGA 91
S RP P +PS + RG RP A
Sbjct: 716 LPKSPPRPRPARLPS--ARRASPRGGRPLAAA 805
>BE124481
Length = 538
Score = 40.8 bits (94), Expect = 0.005
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Frame = +2
Query: 8 LPPTTIPTKTTATTPS-SGSSQSAESKA-----TI*PLANDLWSIAPFFTCTESGPNNTT 61
+P T ++A PS SGSS+ +K+ ++*P + ++ A F E N TT
Sbjct: 275 VPSKASTTGSSAVYPSESGSSEVHSAKSGPKSISV*PDSCEICGFASHFA*EEPYSNPTT 454
Query: 62 SSHSRPSPTLVPSGPSLYLPSRGTR 86
SS + + TLV P L +PSRGTR
Sbjct: 455 SSGAEFAATLVSP*PQLCIPSRGTR 529
>TC89839 homologue to SP|P23466|CYAA_SACKL Adenylate cyclase (EC 4.6.1.1)
(ATP pyrophosphate-lyase) (Adenylyl cyclase). [Yeast],
partial (0%)
Length = 665
Score = 40.4 bits (93), Expect = 0.006
Identities = 39/112 (34%), Positives = 55/112 (48%), Gaps = 6/112 (5%)
Frame = +2
Query: 8 LPPTTIPTKTTATTPS-SGSSQSAESKA-----TI*PLANDLWSIAPFFTCTESGPNNTT 61
+P T ++A PS SGSS+ +K+ ++* + ++ A F E N TT
Sbjct: 272 VPSKASTTGSSAVYPSESGSSEVHSAKSGPKSISV*SDSCEICGFASHFA*EEPYSNPTT 451
Query: 62 SSHSRPSPTLVPSGPSLYLPSRGTRPRCGALFCS*ERGSETDK**RVNLHRP 113
SS + + TLV P L +PSRGTR A+ R SE D *R+ L P
Sbjct: 452 SSGAEFAATLVSP*PQLCIPSRGTRS*H*AVLPFERRSSEVD*K*RLVLR*P 607
>TC76413 similar to GP|3461820|gb|AAC32914.1| unknown protein {Arabidopsis
thaliana}, partial (54%)
Length = 1310
Score = 37.4 bits (85), Expect = 0.052
Identities = 32/104 (30%), Positives = 46/104 (43%), Gaps = 8/104 (7%)
Frame = +3
Query: 6 TILPPTTIPTKTTATTPSSGSSQSAESKATI*PLANDLWSIAPFFTCTESGPNN------ 59
TI PP PT+TT T ++ ++ E ++ S F+ S P+N
Sbjct: 207 TITPPCINPTQTTTTPTTTTTTTLTEPSRFFEDKSSKARSATSSFSQKRSHPSNDDSNVQ 386
Query: 60 --TTSSHSRPSPTLVPSGPSLYLPSRGTRPRCGALFCS*ERGSE 101
TTSS ++ + SG + G R RCG LFCS R S+
Sbjct: 387 PQTTSSEAKRAVNRC-SGCRKRVGLTGFRCRCGDLFCSEHRYSD 515
>BQ750934 similar to PIR|T19673|T19 hypothetical protein C33B4.3 -
Caenorhabditis elegans, partial (1%)
Length = 627
Score = 35.4 bits (80), Expect = 0.20
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +2
Query: 4 STTILPPTTIPTKTT--ATTPSSGSSQSAESKATI*PLANDLWSIAPFFTCTESGPNNTT 61
S+T LPPT +P TT A++PSS ++ + S + S ++TT
Sbjct: 464 SSTSLPPTLVPQNTTSPASSPSSITTSTTSSSS--------------------SSSSSTT 583
Query: 62 SSHSRPSPTLVPSGPS 77
SS S SPT P GPS
Sbjct: 584 SSSSSSSPT--PPGPS 625
>BE942785
Length = 460
Score = 33.5 bits (75), Expect = 0.75
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = -1
Query: 526 VCKSWKVDHCEWRIGLFNQQFVCFLCYRW*WF*RAIIPRVLCRRK-CR*D*DLYGFVEGC 584
+CK W + WR + + + FL +R R+ CRR + + GF EGC
Sbjct: 385 ICK-WXACYHSWRGSILD*PAIIFLLHRSRVCRGDRFSRINCRRYGAQEGWNCNGFFEGC 209
Query: 585 PESNSGRQNRRLGSASGVARKQA*G 609
ES + RLG + + +QA*G
Sbjct: 208 TESRPRESSCRLGQVNTAS*EQA*G 134
>CA859831 weakly similar to GP|13436089|gb| Unknown (protein for MGC:10702)
{Homo sapiens}, partial (6%)
Length = 367
Score = 33.1 bits (74), Expect = 0.98
Identities = 19/40 (47%), Positives = 22/40 (54%), Gaps = 3/40 (7%)
Frame = +1
Query: 717 ITNKNRRFYHGFYY-FLFFV--AFSGKNGNTKN*KKIILF 753
I N FYH YY F+FF+ FS KN N K K +I F
Sbjct: 202 IKNSR*SFYHNTYYVFIFFIISLFSSKNCNRKQMKHLIFF 321
>AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thaliana
chromosome II BAC F26H6; putative retroelement pol
polyprotein, partial (1%)
Length = 488
Score = 33.1 bits (74), Expect = 0.98
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 495 HGNPGFFQLFARQTMDS*HWGCDIYSPSEIEVCKSW 530
HG F L +T+D+* W ++Y E+E+C+ W
Sbjct: 15 HGYQCFV*LSPGKTLDT*RWRGNLYPTPEVEICEEW 122
>BQ751419 weakly similar to GP|21629340|gb L509.2 {Leishmania major}, partial
(1%)
Length = 766
Score = 32.7 bits (73), Expect = 1.3
Identities = 27/87 (31%), Positives = 36/87 (41%)
Frame = +1
Query: 1 TIPSTTILPPTTIPTKTTATTPSSGSSQSAESKATI*PLANDLWSIAPFFTCTESGPNNT 60
T ST PT PT T T + + A A P + TCT +GP ++
Sbjct: 94 TASSTPPGAPTPSPTPTRRATLNGNTPAPASPTAQATPPTGPSTAAPSPSTCTTTGPTSS 273
Query: 61 TSSHSRPSPTLVPSGPSLYLPSRGTRP 87
++S S P+ T P S S GT P
Sbjct: 274 STSASSPAAT-SPRTTSPSPHSSGTPP 351
>TC85774 similar to GP|9759129|dbj|BAB09614.1
gb|AAF26981.1~gene_id:MQK4.20~similar to unknown protein
{Arabidopsis thaliana}, partial (92%)
Length = 833
Score = 32.7 bits (73), Expect = 1.3
Identities = 14/26 (53%), Positives = 17/26 (64%)
Frame = +2
Query: 712 ASSTFITNKNRRFYHGFYYFLFFVAF 737
+SST + NR F HGFYY +FV F
Sbjct: 488 SSSTSSCDFNRPFIHGFYYMFYFVIF 565
>TC79938 similar to GP|17933299|gb|AAL48232.1 AT4g17800/dl4935c {Arabidopsis
thaliana}, partial (63%)
Length = 1259
Score = 32.7 bits (73), Expect = 1.3
Identities = 15/35 (42%), Positives = 17/35 (47%)
Frame = +2
Query: 1539 GSGQIYQEQHHQPLRCSQQNHHRQWHKSE*QHDER 1573
GS Q H Q L QQ+HH+ H SE Q R
Sbjct: 11 GSASFMQNIHRQNLHLQQQHHHQNQHDSEEQESNR 115
>TC77245 similar to GP|6630556|gb|AAF19575.1| putative
alpha-L-arabinofuranosidase {Arabidopsis thaliana},
partial (89%)
Length = 2351
Score = 32.3 bits (72), Expect = 1.7
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = -2
Query: 1326 YSILNDQCEWSQYCASNQCPISRPTCLCVC 1355
YSIL +C W+ C S +C SR +C+C
Sbjct: 1588 YSILTYKCLWTTSCYSIKCCRSRKHVICIC 1499
>BF638002 weakly similar to GP|20260150|gb strong similarity to naringenin
3-dioxygenase {Arabidopsis thaliana}, partial (40%)
Length = 652
Score = 31.6 bits (70), Expect = 2.9
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +1
Query: 1 TIPSTTILPPTTIPTKTTATTPSSGSSQSAESKATI*PLANDLWSIAPFFTCTESGPNNT 60
T PST I P + P+ ++ +TP++ + S +S P A+ S P T P++T
Sbjct: 151 TDPSTPIPLPPSPPSTSSTSTPTTATPPSNQSHT---PAADGAHST*P--TTASHHPSST 315
Query: 61 TS-SHSRPSPTLVPSGPSLYLPSRGTRPR 88
S + + PS T P + +P+ PR
Sbjct: 316 PSATPASPSSTTAPCRKNSNIPALPAPPR 402
>CB892255
Length = 853
Score = 31.6 bits (70), Expect = 2.9
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +2
Query: 1693 KDETSIR*RSPSPANSRKEILCSNVSNPFNQILGANGRQTMK 1734
+D+ SIR R P N +K LC + P ILGANG Q K
Sbjct: 155 EDKASIRQRRLVPVNVKKVALCLKICYP---ILGANGCQITK 271
>TC80366 similar to GP|13877617|gb|AAK43886.1 protein kinase-like protein
{Arabidopsis thaliana}, partial (16%)
Length = 814
Score = 31.2 bits (69), Expect = 3.7
Identities = 23/82 (28%), Positives = 36/82 (43%)
Frame = +3
Query: 3 PSTTILPPTTIPTKTTATTPSSGSSQSAESKATI*PLANDLWSIAPFFTCTESGPNNTTS 62
P+T PP + P TPS+ + + ++ P + T S P +T
Sbjct: 15 PATPSSPPPSTPANPPPVTPSAPPPSTPATPSSPPP------------STTPSAPPPSTP 158
Query: 63 SHSRPSPTLVPSGPSLYLPSRG 84
S+S PSP P+ P++ PS G
Sbjct: 159SNSPPSP---PTTPAISPPSGG 215
>BQ751748 similar to PIR|T47216|T47 probable V-ATPase 20K chain [imported] -
Neurospora crassa, partial (82%)
Length = 642
Score = 31.2 bits (69), Expect = 3.7
Identities = 25/80 (31%), Positives = 36/80 (44%), Gaps = 1/80 (1%)
Frame = -1
Query: 4 STTILPPTTIPTKTTATTPSSGSSQSAES-KATI*PLANDLWSIAPFFTCTESGPNNTTS 62
ST I T+ P+ +T + PSS + A S + P ++ + S P TS
Sbjct: 522 STAISVSTSSPSSSTRSPPSSPTLPPASSSRPCSAPSSSSIVSSTSPMVTLSP*PRPVTS 343
Query: 63 SHSRPSPTLVPSGPSLYLPS 82
S + PS T SGP+ PS
Sbjct: 342 SRACPSLTSPTSGPASTAPS 283
>BQ751327 weakly similar to SP|P43076|PHR1 PH responsive protein 1 precursor
(PH-regulated protein 1). [Yeast] {Candida albicans},
partial (24%)
Length = 574
Score = 31.2 bits (69), Expect = 3.7
Identities = 28/94 (29%), Positives = 39/94 (40%), Gaps = 17/94 (18%)
Frame = +3
Query: 1 TIPSTTILPPTTIPTKTTATTPSSGSSQSAESKATI*PLANDLW-------------SIA 47
T PS L PT P++ T +TPS + + S AT ++ W
Sbjct: 258 TFPSWPRLAPT--PSEPTPSTPSRTTPPA*SSSATPASTSSPTWVSPRPPSTVTTPSGTR 431
Query: 48 PFFTCT----ESGPNNTTSSHSRPSPTLVPSGPS 77
PF T T S P++TTS S P +GP+
Sbjct: 432 PFSTATLPSSTSSPSSTTSLASSPVTRFPTTGPT 533
>AL367832 weakly similar to GP|14091845|gb Putative retroelement {Oryza
sativa}, partial (2%)
Length = 384
Score = 30.8 bits (68), Expect = 4.9
Identities = 26/67 (38%), Positives = 31/67 (45%), Gaps = 5/67 (7%)
Frame = -3
Query: 819 RKEDNSTSSGGDRSYQSGY*GRQERSQDWGIVGCICQEKSN*-----AYQRIC*YIRMVI 873
RKE +S S G D +YQ Y G Q R Q G C * A RI Y M++
Sbjct: 382 RKESHSASPGRD*AYQPRYRGEQARDQ-----GRCCSRGRG*KEDLPAPPRIPGYFCMLV 218
Query: 874 QRHAGSR 880
R+A SR
Sbjct: 217 *RYARSR 197
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.359 0.158 0.619
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,001,696
Number of Sequences: 36976
Number of extensions: 1123335
Number of successful extensions: 14090
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 4387
Number of HSP's successfully gapped in prelim test: 681
Number of HSP's that attempted gapping in prelim test: 9088
Number of HSP's gapped (non-prelim): 6297
length of query: 1770
length of database: 9,014,727
effective HSP length: 110
effective length of query: 1660
effective length of database: 4,947,367
effective search space: 8212629220
effective search space used: 8212629220
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 65 (29.6 bits)
Medicago: description of AC139747.6