BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139747.5 + phase: 0 /pseudo
(1608 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 207 3e-72
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 199 6e-51
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 170 5e-42
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 169 1e-41
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 157 3e-38
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 154 2e-37
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 149 1e-35
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 133 5e-31
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 132 1e-30
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 123 7e-28
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 74 4e-26
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 114 4e-25
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 74 1e-18
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 89 2e-17
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 87 4e-17
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 81 3e-15
BI262818 weakly similar to GP|6642775|gb| gag-pol polyprotein {V... 77 5e-14
BG453335 weakly similar to GP|18071369|g putative gag-pol polypr... 73 8e-13
CB892913 similar to GP|1769897|emb lectin receptor kinase {Arabi... 51 6e-12
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T... 66 1e-10
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 207 bits (528), Expect(2) = 3e-72
Identities = 99/141 (70%), Positives = 117/141 (82%)
Frame = -2
Query: 1170 VVRNKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNG 1229
+ RNK++LV QGYNQ+EGIDYDE F+PVAR+EAIRIL+A+AA KL+QMDVKSAF+NG
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 1230 FLNEEVYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDT 1289
L EEV+V QPPGF + E PNHVF+L K LYGLKQAPRAWY+RLS FL++NGF RGKID
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 1290 TLFRKTHNTDLLIVQVYVDDI 1310
TLF +LLI+QVYVDDI
Sbjct: 64 TLFLLKRE*ELLIIQVYVDDI 2
Score = 84.7 bits (208), Expect(2) = 3e-72
Identities = 38/60 (63%), Positives = 47/60 (78%)
Frame = -3
Query: 1106 AMISQMEPKSINEAIIDDSWIEVMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLD 1165
A IS +EPK++ EA+ D WI M+EEL QFER+KVW LVP + KT+IGTRWVFRNKL+
Sbjct: 606 AFISSIEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVFRNKLE 427
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 199 bits (507), Expect = 6e-51
Identities = 95/219 (43%), Positives = 142/219 (64%), Gaps = 3/219 (1%)
Frame = +1
Query: 1345 LQIKQHSNGIFISQEKYIKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGM 1404
+++ Q+ GI+I Q KY+ D+L+++ M ++ + P+ P L KDE+G + +Y+ +
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 1405 IGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFD 1464
+G L+YL A+RPD+++ + L +RF C E H+ AVKR+ RYL GT +LG+ Y++ S
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 1465 LVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIELSTTEAEYVSAASCCSQI 1524
L AY D+DYAGD +RKSTSG L + WS +KQ + LSTT+AE+++AA C Q
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 1525 LWVRNQLEDYSLRYT---SVPIYCDNTSAINLSKNPIQH 1560
+W+R LE L YT S+ +YCDN S I LSKNP+ H
Sbjct: 541 VWMRRVLE--KLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 170 bits (430), Expect = 5e-42
Identities = 93/260 (35%), Positives = 149/260 (56%), Gaps = 7/260 (2%)
Frame = +3
Query: 1104 NMAMISQM-EPKSINEAIIDDSWIEVMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRN 1162
N+ M++ +P + EA+ + W M E+ ERN W L IG +W+F+
Sbjct: 12 NLGMLTMTSDPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKT 191
Query: 1163 KLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAA---HKSIKLFQ 1219
KL+E G++ + KARLVA+GY+QQ G+DY E FAPVAR + IR+++A AA + +
Sbjct: 192 KLNENGEIEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRDGVCIS* 371
Query: 1220 MDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVF--KLTKALYGLKQAPRAWYDRLSTFL 1277
M + + + + + ++ ++ V ++ +ALYGLKQAPRAWY R+ +
Sbjct: 372 M*KAHSCMEN*MRKFLLIN------HRVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYF 533
Query: 1278 IENGFSRGKIDTTLFRK-THNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMM 1336
+ GF + + TLF K + +LI+ +YVDD+IF M EEF M+ EF MS +
Sbjct: 534 TKEGFEKCPYEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDL 713
Query: 1337 GELGFFLGLQIKQHSNGIFI 1356
G++ +FLG+++ Q+ GI+I
Sbjct: 714 GKMHYFLGVEVTQNEKGIYI 773
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 169 bits (427), Expect = 1e-41
Identities = 88/195 (45%), Positives = 124/195 (63%)
Frame = +1
Query: 1117 NEAIIDDSWIEVMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKAR 1176
N + D W++ MK E NK W+LVP K IG +WV+R K + +G V + KAR
Sbjct: 73 NLPLSDPRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVYRVKENPDGSVNKFKAR 252
Query: 1177 LVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVY 1236
LVA+G++Q G DY ETF+PV + IR++L A ++ Q+D+ +AFLNGFL EEVY
Sbjct: 253 LVAKGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQIDINNAFLNGFLQEEVY 432
Query: 1237 VSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTH 1296
+SQP GF K + V KL K+LYGLKQAPRAWY+ L++ I+ GF++ + D +L
Sbjct: 433 MSQPQGFEAANK-SLVCKLNKSLYGLKQAPRAWYEXLTSAQIQFGFTKSRCDPSLLIYNQ 609
Query: 1297 NTDLLIVQVYVDDII 1311
N + + +YVDDI+
Sbjct: 610 NGACIYLXIYVDDIL 654
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 157 bits (397), Expect = 3e-38
Identities = 82/183 (44%), Positives = 112/183 (60%)
Frame = -1
Query: 1113 PKSINEAIIDDSWIEVMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVR 1172
P+S EA+ D W E + E +N W + K + +RW+F K +G + R
Sbjct: 558 PRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIER 379
Query: 1173 NKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLN 1232
K RLVA+G+ G DY ETFAPVA+L IRI+L+ A + L+QMDVK+AFL G L
Sbjct: 378 KKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELE 199
Query: 1233 EEVYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLF 1292
+EVY+ PPG + K +V +L KA+YGLKQ+PRAWY++LST L GF + ++D TLF
Sbjct: 198 DEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTLF 19
Query: 1293 RKT 1295
T
Sbjct: 18 TLT 10
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 154 bits (390), Expect = 2e-37
Identities = 95/267 (35%), Positives = 147/267 (54%), Gaps = 4/267 (1%)
Frame = +1
Query: 763 GLPKISFEKDKICEACVKGKQVKSSFKTIEFISTQKPLELLHIDLFAPVQTASLTGKRYG 822
G+ K+ F K + G + K SF T T+ L+ +H DL+ P + S G+RY
Sbjct: 1 GIDKLEFCKHLL----FFGNRKKVSFSTATH-RTKGILDYIHSDLWGPSKVTSYGGRRYM 165
Query: 823 FVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENASFKTF 882
I+DDF R WV FL++K+E+F F+ + V+ + G N+ + +D+ EF ++ F F
Sbjct: 166 MTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEF 345
Query: 883 FDENGIKHNFSCARTPQQNGVVERKNRTLQEMARTMLNESNVEN--YFWAEAINTSCYIL 940
+GI + + R PQQNGV ER RTL E AR ML+ + + N W EA +T+C+++
Sbjct: 346 CTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLV 525
Query: 941 NRVSIRKVLNKTPYELWKNIKPSISYFHIFGCYCYILNNKEKLGKFDPKSDKAIFLGYST 1000
NR + K P ++W S IFGC Y L N GK P++ + IFL Y++
Sbjct: 526 NRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYALVND---GKLAPRAGECIFLSYAS 696
Query: 1001 TSKGYRVY--NLKTQTVEISMHIIFDE 1025
SKGYR++ + K+Q + +S + F+E
Sbjct: 697 ESKGYRLWCSDPKSQKLILSRDVTFNE 777
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 149 bits (375), Expect = 1e-35
Identities = 84/240 (35%), Positives = 128/240 (53%)
Frame = +2
Query: 1252 VFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDII 1311
V +L K++YGLKQA R WY +LS LI G+ + D +LF K ++ + VYVDDI+
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199
Query: 1312 FGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYIKDILKKYKM 1371
I + + F++ +G L +FLGL++ + GI ++Q KY ++L+
Sbjct: 200 LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGN 379
Query: 1372 NEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTC 1431
K TP S L +S E +YR +IG L+YLT +RPDI FAV ++F +
Sbjct: 380 LAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVSK 559
Query: 1432 AKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLG 1491
++ H A R+ +YL GL+Y S+ L ++ D+D+A RKS +G FLG
Sbjct: 560 PQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFLG 739
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 133 bits (335), Expect = 5e-31
Identities = 67/139 (48%), Positives = 93/139 (66%), Gaps = 1/139 (0%)
Frame = +2
Query: 1471 ADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIELSTTEAEYVSAASCCSQILWVRNQ 1530
+D+AGD RKSTSG LG I WS +KQ + ST EAEY+++ SC +Q +W+R
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 1531 LED-YSLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDT 1589
LE + + T IYCDN SAI LSKNP+ H RSKHI+I+ H IR+ + +K + + + T
Sbjct: 182 LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCPT 361
Query: 1590 ENQLADIFTKPLVRIDSIF 1608
E ++ADIFTKPL +I+S +
Sbjct: 362 EEKIADIFTKPL-KIESFY 415
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 132 bits (332), Expect = 1e-30
Identities = 82/244 (33%), Positives = 132/244 (53%), Gaps = 5/244 (2%)
Frame = -3
Query: 703 SNKLFFSGSRRKNLYVLELNDMPAEF-----CFMSLEKDKWIWHKRAGHISMKTIAKLSQ 757
S++L G + +LY+LE D + + SL KD +WH R GH + + +
Sbjct: 704 SSQLIGEGVTKGDLYMLEKLDPVSNYKCSFTSSSSLNKDA-LWHARLGHPHGRALNLM-- 534
Query: 758 LDLVRGLPKISFEKDKICEACVKGKQVKSSFKTIEFISTQKPLELLHIDLFAPVQTASLT 817
LP + FE +K CEAC+ GK K+ F + + +L++ DL+ + S
Sbjct: 533 ------LPGVVFE-NKNCEACILGKHCKNVFPRTSTVY-ENCFDLIYTDLWT-APSLSRD 381
Query: 818 GKRYGFVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENA 877
+Y +D+ S++TW+ + KD +AF+NF V N I +RSD+GGE+ +
Sbjct: 380 NHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTSY 201
Query: 878 SFKTFFDENGIKHNFSCARTPQQNGVVERKNRTLQEMARTMLNESNVENYFWAEAINTSC 937
+FK+ D +GI H SC TPQQNGV +RKN+ L E+AR+++ ++NV +T+C
Sbjct: 200 AFKSHLDHHGILHQTSCPYTPQQNGVAKRKNKHLMEVARSLMFQANV---------STAC 48
Query: 938 YILN 941
Y++N
Sbjct: 47 YLIN 36
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza sativa}
[Oryza sativa (japonica cultivar-group)], partial (8%)
Length = 426
Score = 123 bits (308), Expect = 7e-28
Identities = 60/133 (45%), Positives = 80/133 (60%)
Frame = +1
Query: 877 ASFKTFFDENGIKHNFSCARTPQQNGVVERKNRTLQEMARTMLNESNVENYFWAEAINTS 936
ASF F ++ + N A TPQQNGV ER NRTL E R ML + + FWAEA+ T+
Sbjct: 25 ASF*HFVNKRVL*GNSXVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTA 204
Query: 937 CYILNRVSIRKVLNKTPYELWKNIKPSISYFHIFGCYCYILNNKEKLGKFDPKSDKAIFL 996
CY++NR + KTP E+WK S H+FGC Y++ N ++ K DPKS K IFL
Sbjct: 205 CYVINRSPSTVIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFL 384
Query: 997 GYSTTSKGYRVYN 1009
GY+ KGY +++
Sbjct: 385 GYADNVKGYXLWD 423
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 74.3 bits (181), Expect(2) = 4e-26
Identities = 28/86 (32%), Positives = 56/86 (64%)
Frame = +3
Query: 1516 SAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRD 1575
S C + +W++ +E+ + + +YCD+ SA+++++NP HSR+KHI I++HF+R+
Sbjct: 228 SLPQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVRE 407
Query: 1576 HVQKKNIALSFVDTENQLADIFTKPL 1601
V++ ++ + + T + LAD TK +
Sbjct: 408 VVEEGSVDMQKIHTNDNLADAMTKSI 485
Score = 63.9 bits (154), Expect(2) = 4e-26
Identities = 33/78 (42%), Positives = 48/78 (61%)
Frame = +1
Query: 1440 VKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSC 1499
VKRI RY+ GT+ + + + GS + Y D+D+AGD +RKST+G L + W
Sbjct: 1 VKRIMRYIKGTSGVAVCFG-GSELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 1500 RKQNTIELSTTEAEYVSA 1517
+ Q + LSTTEAEY++A
Sbjct: 178 KLQTVVALSTTEAEYMAA 231
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 114 bits (284), Expect = 4e-25
Identities = 59/163 (36%), Positives = 93/163 (56%), Gaps = 2/163 (1%)
Frame = +1
Query: 1439 AVKRIFRYLVGTTDLGLWYRKGSSFD--LVAYCDADYAGDKVERKSTSGSCQFLGQALIG 1496
A+K + +YL + L Y K + + L Y DADYAG+ RKS SG L I
Sbjct: 4 ALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTIS 183
Query: 1497 WSCRKQNTIELSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKN 1556
W +Q+ + LSTT+AEY++ +W++ + + + V I+CD+ SAI+L+ +
Sbjct: 184 WKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEYVKIHCDSQSAIHLANH 363
Query: 1557 PIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTK 1599
+ H R+KHI+I+ HFIRD ++ K I + + +E AD+FTK
Sbjct: 364 QVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 73.9 bits (180), Expect(2) = 1e-18
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Frame = +1
Query: 1264 QAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNT-DLLIVQVYVDDIIFGATKIKMCEE 1322
Q+PR W+DR + + + G+ + + D +F K +T I+ VYVDDI K +
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIVYVDDIFLTGDHGK*IKR 180
Query: 1323 FSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYIKDILKKYKMNEAKIMSTP 1380
NL+ EFE+ +G L +FLG+++ + G ISQ KY+ D+LK+ +M K + P
Sbjct: 181 LKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDP 354
Score = 39.3 bits (90), Expect(2) = 1e-18
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +2
Query: 1373 EAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARF 1428
+ K TPM + L ++G + + Y+ ++G L+YL+ +RPDI F V ++F
Sbjct: 332 DVKPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQF 499
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 88.6 bits (218), Expect = 2e-17
Identities = 39/102 (38%), Positives = 64/102 (62%)
Frame = -2
Query: 936 SCYILNRVSIRKVLNKTPYELWKNIKPSISYFHIFGCYCYILNNKEKLGKFDPKSDKAIF 995
+CY++NR+ R + ++ P+E+ KPS++Y +FGC CY+L E K + +S KA+F
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525
Query: 996 LGYSTTSKGYRVYNLKTQTVEISMHIIFDEYDEHSKPKENED 1037
+GYSTT KGY+ Y+ + + V +S + F E + + K ED
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIEERGYYEEKNQED 399
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 87.4 bits (215), Expect = 4e-17
Identities = 43/83 (51%), Positives = 61/83 (72%), Gaps = 1/83 (1%)
Frame = +2
Query: 1154 IGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHK 1213
IG RW+++ K +E+G +++ KARLVA+GY +Q+GID+DE FAPV R+E I +LLA AA
Sbjct: 95 IGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAPVVRIETI*LLLALAATN 274
Query: 1214 SIKLFQMDVKSAFLNG-FLNEEV 1235
+ +DVK AFLNG F+ E+
Sbjct: 275 GC*IHHIDVKIAFLNGHFVGTEI 343
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 81.3 bits (199), Expect = 3e-15
Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Frame = +1
Query: 1415 RPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSS---FDLVAYCDA 1471
RPDI ++V + ++F ++ HL A RI RY+ GT + GL + G+ ++L+ Y D+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 1472 DYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIELSTTEAEYVSAASCCSQILWVRNQL 1531
D+ GD R+STSG A I W +KQ LS+ EAEY++ Q LW+ + +
Sbjct: 301 DWCGD---RRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 1532 ED 1533
++
Sbjct: 472 KE 477
>BI262818 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
vinifera}, partial (24%)
Length = 615
Score = 77.0 bits (188), Expect = 5e-14
Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 1/145 (0%)
Frame = +1
Query: 12 PLFDGSNYYFWKGKMELFLRSQDNDMW-AVITDGDFVPTTKEGAVKAKSAWSTDEKAQVL 70
P+FDG NY+ W ++E +L + ND+W AV D + +P + + A + K +
Sbjct: 178 PVFDGENYHIWAARIEAYLEA--NDLWEAVEEDYEVLPLSDNPTM----AQIKNHKERKT 339
Query: 71 LNSKARLFLSCALTMEESERVDECTNAKEVWDTLKIHHEGTSHVKETRIDIGVRKFEVFE 130
SKAR L A++ E R+ +A E+W+ LK +EG ++ + +R+FE+ +
Sbjct: 340 RKSKARATLFAAVSEEIFTRIMTIKSAFEIWNFLKTEYEGDERIRGMQALNLIREFEMQK 519
Query: 131 MSENETIDEMYARFTTIVNEMRSLG 155
M E+ETI E + +I N++R LG
Sbjct: 520 MKESETIKEYANKLISIANKVRLLG 594
>BG453335 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (11%)
Length = 660
Score = 73.2 bits (178), Expect = 8e-13
Identities = 37/140 (26%), Positives = 81/140 (57%)
Frame = +1
Query: 89 ERVDECTNAKEVWDTLKIHHEGTSHVKETRIDIGVRKFEVFEMSENETIDEMYARFTTIV 148
+R+ + T +KE + L+ +HEG V++ ++ RKF++ +M + + I + ++ +V
Sbjct: 181 KRISKSTRSKEASNILEKYHEGDDKVEQIKLQSLRRKFKLMQMEDEKKIADYISKLINVV 360
Query: 149 NEMRSLGKAYSTHDRIRKILRCLPSVWRPMVTAITQAKDLKSMNLEDLIGSLRAHEVVLQ 208
N++++ G+ + + KI+R L + +V AI ++KD+K++ +E+L SL AH++++
Sbjct: 361 NQIKAYGEVVTDQQIVEKIMRTLSPRFDFIVVAIHESKDVKTLKIEELKSSLEAHKLMVY 540
Query: 209 GDKPVKKVKTLALKASQQTP 228
+ + L + S TP
Sbjct: 541 ERSSERSIHYLPHE*SLFTP 600
>CB892913 similar to GP|1769897|emb lectin receptor kinase {Arabidopsis
thaliana}, partial (35%)
Length = 837
Score = 50.8 bits (120), Expect(2) = 6e-12
Identities = 35/117 (29%), Positives = 56/117 (46%)
Frame = +3
Query: 5 GGSSNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITDGDFVPTTKEGAVKAKSAWSTD 64
G +S + PL GS Y KM L + +D+W V+ G ++ KA+ D
Sbjct: 108 GAASFQVPLLKGSTYDNCFIKMMALLGA--HDVWEVVEKGYKESQDEDSLTKAQRDTLKD 281
Query: 65 EKAQVLLNSKARLFLSCALTMEESERVDECTNAKEVWDTLKIHHEGTSHVKETRIDI 121
+ + + KA + AL +E E++ T+AKE W+ LK +G VK+ R+ I
Sbjct: 282 SRKR---DKKALFLIYQALDEDEFEKISNATSAKEAWEKLKTSCQGEDKVKKVRLQI 443
Score = 39.3 bits (90), Expect(2) = 6e-12
Identities = 22/70 (31%), Positives = 39/70 (55%)
Frame = +1
Query: 135 ETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSVWRPMVTAITQAKDLKSMNLE 194
E + ++R +I N+++ + + KILR L + +V I + KDL++M +E
Sbjct: 472 ERVRVYFSRVISISNQLKRNSEKLEDVRIMEKILRSLDPKFEHIVEKIEETKDLETMTIE 651
Query: 195 DLIGSLRAHE 204
L GSL+A+E
Sbjct: 652 KLQGSLQAYE 681
>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
{Arabidopsis thaliana}, partial (3%)
Length = 539
Score = 65.9 bits (159), Expect = 1e-10
Identities = 35/104 (33%), Positives = 54/104 (51%)
Frame = -3
Query: 1409 LYLTASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAY 1468
+ LT P+I F++ L +R+ + H +K I +YL G D+GL+Y K S DL+ Y
Sbjct: 531 ILLTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGY 352
Query: 1469 CDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIELSTTEA 1512
+A Y D + +S +G G +I W K +TI S+ A
Sbjct: 351 VNA*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSSNHA 220
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,502,448
Number of Sequences: 36976
Number of extensions: 672161
Number of successful extensions: 3798
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 3679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3778
length of query: 1608
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1499
effective length of database: 4,984,343
effective search space: 7471530157
effective search space used: 7471530157
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Medicago: description of AC139747.5