BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139745.7 + phase: 0
(240 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW775035 similar to GP|13486760|dbj hypothetical protein {Oryza ... 110 6e-25
TC91130 homologue to GP|11245494|gb|AAG33640.1 SPATULA {Arabidop... 85 2e-17
CA919209 similar to SP|O80536|PIF3_ Phytochrome-interacting fact... 76 1e-14
TC83351 similar to PIR|T47788|T47788 hypothetical protein F17J16... 65 6e-13
TC80777 homologue to GP|4115386|gb|AAD03387.1| unknown protein {... 67 5e-12
TC78413 similar to PIR|T06329|T06329 symbiotic ammonium transpor... 67 6e-12
AW585039 similar to GP|13605859|gb AT4g02590/T10P11_13 {Arabidop... 65 2e-11
TC79250 similar to PIR|T06329|T06329 symbiotic ammonium transpor... 64 5e-11
TC77213 similar to PIR|T10861|T10861 phaseolin G-box binding pro... 63 9e-11
BF641877 similar to GP|13605859|gb AT4g02590/T10P11_13 {Arabidop... 62 2e-10
TC77805 similar to GP|20127064|gb|AAM10951.1 putative bHLH trans... 62 3e-10
TC88734 similar to GP|13346180|gb|AAK19612.1 GHDEL61 {Gossypium ... 61 4e-10
TC90648 similar to GP|20127044|gb|AAM10942.1 putative bHLH trans... 60 7e-10
BG648958 similar to GP|19310467|gb| At1g01260/F6F3_25 {Arabidops... 59 1e-09
TC87518 weakly similar to PIR|E96714|E96714 probable DNA-binding... 58 3e-09
TC92979 similar to GP|20127014|gb|AAM10934.1 putative bHLH trans... 57 6e-09
TC82195 homologue to GP|19310475|gb|AAL84972.1 AT3g26744/MLJ15_1... 57 8e-09
TC79766 homologue to GP|5923912|gb|AAD56411.1| bHLH transcriptio... 56 1e-08
TC89598 weakly similar to GP|20127014|gb|AAM10934.1 putative bHL... 55 2e-08
TC93549 similar to GP|20127044|gb|AAM10942.1 putative bHLH trans... 55 2e-08
>AW775035 similar to GP|13486760|dbj hypothetical protein {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 716
Score = 110 bits (274), Expect = 6e-25
Identities = 63/116 (54%), Positives = 83/116 (71%), Gaps = 4/116 (3%)
Frame = +1
Query: 105 SSVCSLEA----SNDLNFGVRKSHEDTDDSPYLSDNDEETQENIVKEKPVREGNRVKRSY 160
SSVCS S+D N +++ DT+DS S++ E+ + K R KRS
Sbjct: 316 SSVCSGNGADRGSDDPNRDLKRKSRDTEDSECHSEDVEDESVGVKKGAAGRGVAGSKRS- 492
Query: 161 RNAKVHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQV 216
R A+VHNLSER+RRD+INEK+RAL+ELIPNCNK+DKASMLD+AI+YLKTL+LQ+Q+
Sbjct: 493 RAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQM 660
>TC91130 homologue to GP|11245494|gb|AAG33640.1 SPATULA {Arabidopsis
thaliana}, partial (20%)
Length = 766
Score = 85.1 bits (209), Expect = 2e-17
Identities = 46/77 (59%), Positives = 61/77 (78%)
Frame = +2
Query: 157 KRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQV 216
KRS R A+VHNLSE++RR +INEK++AL+ LIPN NK DKASMLD+AI+YLK +LQLQV
Sbjct: 20 KRS-RAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLK--QLQLQV 190
Query: 217 KFYVLQFSVTLFKLRFH 233
+ L+ ++L + FH
Sbjct: 191 QMLSLRNGLSLHPMYFH 241
>CA919209 similar to SP|O80536|PIF3_ Phytochrome-interacting factor 3
(Phytochrome-associated protein 3), partial (11%)
Length = 727
Score = 76.3 bits (186), Expect = 1e-14
Identities = 46/94 (48%), Positives = 61/94 (63%), Gaps = 4/94 (4%)
Frame = -2
Query: 105 SSVCSLEA----SNDLNFGVRKSHEDTDDSPYLSDNDEETQENIVKEKPVREGNRVKRSY 160
SSVCS S+D N +++ DT+DS S++ E+ + K R KRS
Sbjct: 534 SSVCSGNGADRGSDDPNRDLKRKSRDTEDSECHSEDVEDESVGVKKGAAGRGVAGSKRS- 358
Query: 161 RNAKVHNLSERKRRDKINEKIRALKELIPNCNKM 194
R A+VHNLSER+RRD+INEK+RAL+ELIPNCNK+
Sbjct: 357 RAAEVHNLSERRRRDRINEKMRALQELIPNCNKV 256
>TC83351 similar to PIR|T47788|T47788 hypothetical protein F17J16.110 -
Arabidopsis thaliana, partial (18%)
Length = 882
Score = 65.1 bits (157), Expect(2) = 6e-13
Identities = 33/66 (50%), Positives = 48/66 (72%)
Frame = +1
Query: 137 DEETQENIVKEKPVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNKMDK 196
D E + + K+ R G+ R R A+VHNLSER+RRD+INEK++AL++LIP+ +K DK
Sbjct: 7 DTELKSGVRKKTSQRSGSA--RRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDK 180
Query: 197 ASMLDD 202
SML++
Sbjct: 181 PSMLEE 198
Score = 25.4 bits (54), Expect(2) = 6e-13
Identities = 11/14 (78%), Positives = 14/14 (99%)
Frame = +2
Query: 203 AIDYLKTLKLQLQV 216
AI+YLK+L+LQLQV
Sbjct: 200 AIEYLKSLQLQLQV 241
>TC80777 homologue to GP|4115386|gb|AAD03387.1| unknown protein {Arabidopsis
thaliana}, partial (39%)
Length = 1307
Score = 67.4 bits (163), Expect = 5e-12
Identities = 29/51 (56%), Positives = 45/51 (87%)
Frame = +1
Query: 166 HNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQV 216
H+++ER RR++I E+++AL+EL+PN NK DKASMLD+ IDY+K L++Q++V
Sbjct: 469 HSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKV 621
>TC78413 similar to PIR|T06329|T06329 symbiotic ammonium transport protein
SAT1 - soybean, partial (30%)
Length = 1397
Score = 67.0 bits (162), Expect = 6e-12
Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Frame = +2
Query: 100 NAQKPSSVCSLEASNDLNFGVRKSHEDTDDSPYLSDNDEET--QENIVKE-KPVREGNRV 156
N PSS S S D +K+ L N + + ++NIV+ KP +G
Sbjct: 332 NTSSPSSTTSQILSFDCTLNTKKNKVVPLSQTELPQNRKGSLQKQNIVETIKP--QGQGT 505
Query: 157 KRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQV 216
KRS + + H ++ERKRR+K+++ + AL LIP KMDKAS+L DAI Y+K L+ +L+V
Sbjct: 506 KRSVAHNQDHIIAERKRREKLSQCLIALAALIPGLKKMDKASVLGDAIKYVKELQERLRV 685
>AW585039 similar to GP|13605859|gb AT4g02590/T10P11_13 {Arabidopsis
thaliana}, partial (46%)
Length = 628
Score = 65.1 bits (157), Expect = 2e-11
Identities = 27/51 (52%), Positives = 45/51 (87%)
Frame = +1
Query: 166 HNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQV 216
H+++ER RR++I E+++AL+EL+P+ NK DKA+MLD+ +DY+K L+LQ++V
Sbjct: 184 HSIAERLRRERIAERMKALQELVPSINKTDKAAMLDEIVDYVKFLRLQVKV 336
>TC79250 similar to PIR|T06329|T06329 symbiotic ammonium transport protein
SAT1 - soybean, partial (34%)
Length = 1145
Score = 63.9 bits (154), Expect = 5e-11
Identities = 48/180 (26%), Positives = 90/180 (49%), Gaps = 1/180 (0%)
Frame = +2
Query: 44 QQQKHLTLNAATKSNSGYERSRELLPTVDEHSEAAASHTNAPRIRGKRKASAINLC-NAQ 102
Q+ +L + + S+ + S + + + ++ S+ P + K + + LC +
Sbjct: 161 QENNNLQQSFSGGSHCSHTTSNTMSNSSGDVNKTNPSNIGYPSLPKKDSSHSYILCFGNE 340
Query: 103 KPSSVCSLEASNDLNFGVRKSHEDTDDSPYLSDNDEETQENIVKEKPVREGNRVKRSYRN 162
P S+ ++ ++ V + L + + + NI +E + + RN
Sbjct: 341 NPESMLNIGSTLKPKGKVSNHGKSLASKGSLENQKKGPKRNI------QESKKTDSAARN 502
Query: 163 AKVHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQVKFYVLQ 222
A+ H ++ERKRR+KI++K AL L+P+ KMDKAS+L DAI+++K QLQ K +L+
Sbjct: 503 AQDHIIAERKRREKISQKFIALSALLPDLKKMDKASVLGDAINHVK----QLQEKVKLLE 670
>TC77213 similar to PIR|T10861|T10861 phaseolin G-box binding protein PG1 -
kidney bean, partial (70%)
Length = 2391
Score = 63.2 bits (152), Expect = 9e-11
Identities = 35/97 (36%), Positives = 51/97 (52%)
Frame = +3
Query: 119 GVRKSHEDTDDSPYLSDNDEETQENIVKEKPVREGNRVKRSYRNAKVHNLSERKRRDKIN 178
G H D D S E ++P + G + H +ER+RR+K+N
Sbjct: 1413 GGDSDHSDLDVSAVKEGESSRVVEP--GKRPKKRGRKPANGREEPLNHVEAERQRREKLN 1586
Query: 179 EKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQ 215
+K AL+ ++PN +KMDKAS+L DAI Y+ LK +LQ
Sbjct: 1587 QKFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQ 1697
>BF641877 similar to GP|13605859|gb AT4g02590/T10P11_13 {Arabidopsis
thaliana}, partial (55%)
Length = 642
Score = 62.0 bits (149), Expect = 2e-10
Identities = 26/50 (52%), Positives = 43/50 (86%)
Frame = +2
Query: 166 HNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQ 215
H+++ER RR++I E+IRAL+EL+P+ NK D+A+ML + +DY+K L+LQ++
Sbjct: 482 HSIAERLRRERIAERIRALQELVPSVNKTDRAAMLXEIVDYVKFLRLQVK 631
>TC77805 similar to GP|20127064|gb|AAM10951.1 putative bHLH transcription
factor {Arabidopsis thaliana}, partial (30%)
Length = 2068
Score = 61.6 bits (148), Expect = 3e-10
Identities = 54/192 (28%), Positives = 97/192 (50%), Gaps = 29/192 (15%)
Frame = +3
Query: 62 ERSRELLPTVDEHSEAAASHTNAPRIRGKRKASAINLCNAQKPSSVCSLEASNDLN--FG 119
++ E + + E+ S N P KAS ++ + ++ +S +A N N G
Sbjct: 789 QQENEKMEVANSQEESTISEQNTPNGEIGVKASP-DMNSRKRKASSSKGKAPNSTNPTKG 965
Query: 120 VRKSHEDTDDSPYLSDNDEETQENIVK--EKPVREGN----------------RVKRSYR 161
V S ED + + + N+ E EN V+ E+ ++EG ++ Y
Sbjct: 966 VEGSGEDFN-AKKIKANEGERNENGVRNMEEEIKEGTPNAGEEKQNKSDSKPPEPQKDYI 1142
Query: 162 NAKV--------HNLSERKRRDKINEKIRALKELIPNCNKM-DKASMLDDAIDYLKTLKL 212
+ + H+L+ER RR+KI+E+++ L++L+P CNK+ KA MLD+ I+Y+++ L
Sbjct: 1143HVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQS--L 1316
Query: 213 QLQVKFYVLQFS 224
Q QV+F ++ S
Sbjct: 1317QRQVEFLSMKLS 1352
>TC88734 similar to GP|13346180|gb|AAK19612.1 GHDEL61 {Gossypium hirsutum},
partial (40%)
Length = 1701
Score = 60.8 bits (146), Expect = 4e-10
Identities = 40/116 (34%), Positives = 63/116 (53%)
Frame = +3
Query: 100 NAQKPSSVCSLEASNDLNFGVRKSHEDTDDSPYLSDNDEETQENIVKEKPVREGNRVKRS 159
N Q+P S + + F V + H +D E+QE E REG R++
Sbjct: 1254 NFQRPRQGTSQKLLKKILFEVPRMH---------TDGLLESQE----ENDYREGTRLEAD 1394
Query: 160 YRNAKVHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQ 215
H LSER+RR K+NE+ L+ ++P+ +K DK S+LDDAI+YL+ L+ +++
Sbjct: 1395 --EGMNHVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLRKLEKKIR 1556
>TC90648 similar to GP|20127044|gb|AAM10942.1 putative bHLH transcription
factor {Arabidopsis thaliana}, partial (21%)
Length = 1164
Score = 60.1 bits (144), Expect = 7e-10
Identities = 36/111 (32%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Frame = +3
Query: 125 EDTDDSPYLSDNDEETQENIVKEKPVREGNRVKRSYRNAKV--HNLSERKRRDKINEKIR 182
++ D P + + ++ ++N ++ R+ R H+L+ER RR+KI+E++R
Sbjct: 51 KENDKKPKVEQSGKQAKDNSPSGDASKDNFIHVRARRGQATNSHSLAERVRREKISERMR 230
Query: 183 ALKELIPNCNKM-DKASMLDDAIDYLKTLKLQLQVKFYVLQFSVTLFKLRF 232
L+EL+P CNK+ KA MLD+ I+Y+++ LQ QV+F ++ + +L F
Sbjct: 231 LLQELVPGCNKITGKAVMLDEIINYVQS--LQQQVEFLSMKLATVNPELNF 377
>BG648958 similar to GP|19310467|gb| At1g01260/F6F3_25 {Arabidopsis
thaliana}, partial (15%)
Length = 806
Score = 59.3 bits (142), Expect = 1e-09
Identities = 28/80 (35%), Positives = 49/80 (61%)
Frame = +3
Query: 137 DEETQENIVKEKPVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNKMDK 196
D E + + +P + G + H +ER+RR+K+N++ AL+ ++PN +KMDK
Sbjct: 246 DVEADQPSDERRPRKRGRKPANGRDEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDK 425
Query: 197 ASMLDDAIDYLKTLKLQLQV 216
AS+L DAI Y+ L+ +L++
Sbjct: 426 ASLLGDAIAYINELQAKLKI 485
>TC87518 weakly similar to PIR|E96714|E96714 probable DNA-binding protein
T6L1.19 [imported] - Arabidopsis thaliana, partial (41%)
Length = 1337
Score = 58.2 bits (139), Expect = 3e-09
Identities = 36/93 (38%), Positives = 56/93 (59%), Gaps = 1/93 (1%)
Frame = +2
Query: 125 EDTDDSPYLSDNDEETQENIVKEKPVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRAL 184
+D DD + N + N K V E R KR+ + H+ +E++RR KINE+ +AL
Sbjct: 89 DDDDDQDIFTPNTSSSINNNNNVK-VDEPIRGKRANPHRSKHSETEQRRRSKINERFQAL 265
Query: 185 KELIP-NCNKMDKASMLDDAIDYLKTLKLQLQV 216
++LIP N +K DKAS L + I+Y+ L+ +LQ+
Sbjct: 266 RDLIPENDSKRDKASFLLEVIEYIHFLQEKLQI 364
>TC92979 similar to GP|20127014|gb|AAM10934.1 putative bHLH transcription
factor {Arabidopsis thaliana}, partial (15%)
Length = 744
Score = 57.0 bits (136), Expect = 6e-09
Identities = 29/87 (33%), Positives = 52/87 (59%)
Frame = +2
Query: 129 DSPYLSDNDEETQENIVKEKPVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELI 188
D ++ + E ++ ++ +K + ++ KR + + H ++ER RR+K+ + AL L+
Sbjct: 407 DLENMNHSTETSKGSLENKKLETKTSKSKRPRAHGRDHIMAERNRREKLTQSFIALAALV 586
Query: 189 PNCNKMDKASMLDDAIDYLKTLKLQLQ 215
PN KMDK S+L D I Y+K LK +L+
Sbjct: 587 PNLKKMDKLSVLIDTIKYMKELKNRLE 667
>TC82195 homologue to GP|19310475|gb|AAL84972.1 AT3g26744/MLJ15_15
{Arabidopsis thaliana}, partial (17%)
Length = 1189
Score = 56.6 bits (135), Expect = 8e-09
Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Frame = +2
Query: 125 EDTDDSPYLS-DNDEETQE-NIVKEKPVREGNRVKRSYRNAKVHNL-SERKRRDKINEKI 181
+D DD L+ D+DE + N V G++ + + NL +ER+RR K+N+++
Sbjct: 824 DDVDDFSELNYDSDENGNDLNNSNGTVVTGGDQKGKKKKGLPAKNLMAERRRRKKLNDRL 1003
Query: 182 RALKELIPNCNKMDKASMLDDAIDYLKTL 210
L+ ++P +KMD+AS+L DA+DYLK L
Sbjct: 1004YMLRSVVPKISKMDRASILGDAVDYLKEL 1090
>TC79766 homologue to GP|5923912|gb|AAD56411.1| bHLH transcription factor
GBOF-1 {Tulipa gesneriana}, partial (28%)
Length = 944
Score = 56.2 bits (134), Expect = 1e-08
Identities = 46/187 (24%), Positives = 91/187 (48%), Gaps = 1/187 (0%)
Frame = +1
Query: 30 VQEKESKAVACTKFQQQKHLTLNAATKSNSGYERSRELLPTVDEHSEAAASHTNAPRIRG 89
V ++ SK + LT N + +S+ ++ E+ + + N+P
Sbjct: 184 VDQQSSKVTTTITENEPSSLTKNLSPQSSMVLDKL--------ENGDEQVTQKNSPT--- 330
Query: 90 KRKASAINLCNAQKPSSVCSLEASNDLNFGVRKSHEDTDDSPYLSDNDEETQENIVKEKP 149
++K N N Q + A+ N +K+ ED + +++ Q + E P
Sbjct: 331 EKKRRTRNNTNPQSHDN-----AAEGKNKKQKKNKEDEK-----AKAEKKDQRKCLDEPP 480
Query: 150 VREGNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNKM-DKASMLDDAIDYLK 208
+ R + H+L+ER RR+KI+E+++ L++L+P C+K+ KA MLD+ I+Y++
Sbjct: 481 TGYIHVRARRGQATDSHSLAERVRREKISERMKKLQQLVPGCDKVTGKALMLDEIINYVQ 660
Query: 209 TLKLQLQ 215
+L+ Q++
Sbjct: 661 SLQNQVE 681
>TC89598 weakly similar to GP|20127014|gb|AAM10934.1 putative bHLH
transcription factor {Arabidopsis thaliana}, partial
(24%)
Length = 849
Score = 55.5 bits (132), Expect = 2e-08
Identities = 30/87 (34%), Positives = 52/87 (59%)
Frame = +3
Query: 125 EDTDDSPYLSDNDEETQENIVKEKPVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRAL 184
E+ + +S D +EN V + V R+ A+ H ++ERKRR+K++++ AL
Sbjct: 441 ENLNFGSVISQGDYYKRENKV--------SAVNRNPMQARDHVIAERKRREKLSQRFIAL 596
Query: 185 KELIPNCNKMDKASMLDDAIDYLKTLK 211
++P KMDKA++L+DAI ++K L+
Sbjct: 597 SSILPGLKKMDKATILEDAIKHMKQLQ 677
>TC93549 similar to GP|20127044|gb|AAM10942.1 putative bHLH transcription
factor {Arabidopsis thaliana}, partial (22%)
Length = 715
Score = 55.5 bits (132), Expect = 2e-08
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Frame = +1
Query: 166 HNLSERKRRDKINEKIRALKELIPNCNKM-DKASMLDDAIDYLKTLKLQLQVKFYVLQFS 224
H+L+ER RR+KI+E+++ L+EL+P C+K+ KA MLD+ I+Y+++ LQ QV+F ++ +
Sbjct: 292 HSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQS--LQRQVEFLSMKLA 465
Query: 225 VTLFKLRFH 233
+L F+
Sbjct: 466 TVNPRLDFN 492
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.315 0.130 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,635,147
Number of Sequences: 36976
Number of extensions: 79142
Number of successful extensions: 614
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of query: 240
length of database: 9,014,727
effective HSP length: 93
effective length of query: 147
effective length of database: 5,575,959
effective search space: 819665973
effective search space used: 819665973
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Medicago: description of AC139745.7