BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139745.5 + phase: 0 /pseudo
(2129 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB065285 weakly similar to PIR|A84500|A84 probable retroelement ... 402 e-111
AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis... 301 2e-81
AL367832 weakly similar to GP|14091845|gb Putative retroelement ... 239 1e-62
BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - ... 152 4e-59
TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna... 181 3e-45
CB065382 similar to PIR|T09671|T096 RPE15 protein - alfalfa (fra... 152 1e-36
AL366605 149 1e-35
AL375832 132 1e-30
AL375831 85 2e-29
BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana... 113 9e-25
AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thalia... 77 2e-22
BG586308 weakly similar to PIR|F84528|F8 probable retroelement p... 61 5e-18
BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin... 85 3e-16
TC77595 weakly similar to PIR|T18350|T18350 probable pol polypro... 79 2e-14
BG587127 weakly similar to PIR|H84506|H84 probable retroelement ... 66 2e-10
BE942785 57 1e-07
BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis t... 49 2e-05
TC83629 weakly similar to GP|6692261|gb|AAF24611.1| putative RNa... 49 2e-05
CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product ... 49 2e-05
TC92306 49 3e-05
>CB065285 weakly similar to PIR|A84500|A84 probable retroelement gag/pol
polyprotein [imported] - Arabidopsis thaliana, partial
(2%)
Length = 592
Score = 402 bits (1032), Expect = e-111
Identities = 189/197 (95%), Positives = 195/197 (98%)
Frame = -2
Query: 1529 KSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNN 1588
KSKDCEEPLI EGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGH+IPFTARILFECTNN
Sbjct: 591 KSKDCEEPLIGEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHYIPFTARILFECTNN 412
Query: 1589 MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYF 1648
MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYF
Sbjct: 411 MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYF 232
Query: 1649 TKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGE 1708
TKVELHHIPRDENQMADALATLSSMFRVNHWNDVPII+VQRLERPSHVFAIG+VIDQ GE
Sbjct: 231 TKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGNVIDQTGE 52
Query: 1709 NVIDYRPWYYDIKQFLL 1725
NV+DY+PWYYDIKQFL+
Sbjct: 51 NVVDYKPWYYDIKQFLV 1
>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
chromosome II BAC F26H6; putative retroelement pol
polyprotein, partial (1%)
Length = 636
Score = 301 bits (770), Expect = 2e-81
Identities = 133/167 (79%), Positives = 156/167 (92%)
Frame = -2
Query: 1433 KTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKT 1492
KTCCALAWAAKRLRHY++NHTTWL+S+MDPIKYIFEK A+TG+IARWQMLLSEYDI +++
Sbjct: 635 KTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRS 456
Query: 1493 QKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVF 1552
QKAIKGSILADHLA+QPL+DY+PI+FDFPDEEIMYLK KDC+EPL EGPDP+S WGL+F
Sbjct: 455 QKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIF 276
Query: 1553 DGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGI 1599
DGAVN YG GIGAV+++P+G HIPFTAR+ F+CTNN+AEYEACI GI
Sbjct: 275 DGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEACIMGI 135
Score = 48.1 bits (113), Expect = 4e-05
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +2
Query: 1399 CVLGQQDETGKKEHAIYYLSKKFT 1422
CVLGQQDETG+KEHAIYYLS+K +
Sbjct: 38 CVLGQQDETGRKEHAIYYLSRKLS 109
>AL367832 weakly similar to GP|14091845|gb Putative retroelement {Oryza
sativa}, partial (2%)
Length = 384
Score = 239 bits (609), Expect = 1e-62
Identities = 115/128 (89%), Positives = 122/128 (94%)
Frame = -1
Query: 1011 QEKKAIQPHQEEIELINIGTEENKQEIKIGATLEEGVKQKVIQLLREYPDIFAWSYEDMP 1070
QE+KAIQPHQEEIELIN+GTEENK+EIK+GA LEEGVK+K+ QLLREY DIFA SYEDMP
Sbjct: 384 QERKAIQPHQEEIELINLGTEENKREIKVGAALEEGVKRKIFQLLREYLDIFACSYEDMP 205
Query: 1071 GLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANI 1130
GLDP IVEHRIPTKPECPPVR KLRRTHPDMALKIK+EVQKQIDAGFLMTVEYPEWVANI
Sbjct: 204 GLDPKIVEHRIPTKPECPPVR*KLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANI 25
Query: 1131 VPVPKKDG 1138
VPVPKKDG
Sbjct: 24 VPVPKKDG 1
>BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - Arabidopsis
thaliana, partial (13%)
Length = 763
Score = 152 bits (383), Expect(2) = 4e-59
Identities = 70/136 (51%), Positives = 101/136 (73%)
Frame = +2
Query: 1190 MSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVK 1249
M P+D EKT+FIT GT+CYKVMPFGL NAG+TYQR + +F D + +EVY+DDM+VK
Sbjct: 2 MHPDDLEKTAFITDRGTYCYKVMPFGLKNAGSTYQRLVNRMFADKLGNTMEVYIDDMLVK 181
Query: 1250 STDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIR 1309
S H+ +L + F+ L +Y ++LNP KCTFGV SG+ LG+IV+Q+GIEV+P ++ AI
Sbjct: 182 SLRATDHLNHLKE*FKTLDEYIMKLNPAKCTFGVTSGEFLGYIVTQQGIEVNPKQITAIL 361
Query: 1310 EMPAPQTEKQVRGFLG 1325
++P+P+ ++V+ G
Sbjct: 362 DLPSPKNSREVQRLTG 409
Score = 97.1 bits (240), Expect(2) = 4e-59
Identities = 49/120 (40%), Positives = 75/120 (61%)
Frame = +3
Query: 1325 GRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGR 1384
GR+ ++RFIS T C P +KLL N+ VW+++C+EAF+ +K YL PP+L P G
Sbjct: 408 GRIAALNRFISRSTDKCLPFYKLLCGNKRFVWDEKCEEAFEQLKQYLTTPPVLSKPEAGD 587
Query: 1385 PLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKR 1444
L +Y+A+ ++ VL ++D +K I+Y SK+ TD ETRY LEK A+ +A++
Sbjct: 588 TLSLYIAISSTAVSSVLIREDRGEQK--PIFYTSKRMTDPETRYPTLEKMAFAVITSARK 761
>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
alternata}, partial (21%)
Length = 1540
Score = 181 bits (459), Expect = 3e-45
Identities = 123/398 (30%), Positives = 200/398 (49%), Gaps = 7/398 (1%)
Frame = +1
Query: 1054 LLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPEC----PPVRQ-KLRRTHPDMALKIKNE 1108
+L E+PD+F +++H IP P+ PP+ L L +K
Sbjct: 343 VLEEFPDLFNPEKAYQVPASRGLLDHAIPLIPDKDGNDPPLPWGPLYGMSRQELLVLKKT 522
Query: 1109 VQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVD 1168
++ +D GF+ A ++ V K G +R CVD+R LN + KD +PLP I +
Sbjct: 523 LEDLLDKGFIKASGSAAG-APVLFVRKPGGGIRFCVDYRALNAITKKDRYPLPLISETLR 699
Query: 1169 NTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMT 1228
A ++ F+ +D + ++++++ ED+EKT+F T +G F + V PFGL A AT+QR +
Sbjct: 700 RVAGARWFTKLDVVAAFHKMRIKDEDQEKTAFRTRYGLFEWIVCPFGLTGAPATFQRYIN 879
Query: 1229 TLFHDMIHKEVEVYVDDMIVKST-DEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGK 1287
H+ + V Y+DD+++ +T ++ H + ++ RL L L+P KC F V + K
Sbjct: 880 KTLHEFLDDFVTAYIDDVLIYTTGSKKDHEAQVRRVLRRLADAGLSLDPKKCEFSVTTVK 1059
Query: 1288 LLGFIVSQ-KGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFK 1346
+GFI++ KG+ DP K+ AIR+ P + K R FLG NY FI + P+ +
Sbjct: 1060 YVGFILTAGKGVSCDPLKLAAIRDWLPPGSVKGARSFLGFCNYYKDFIPGYSEITEPLTR 1239
Query: 1347 LLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDE 1406
L RK+ P W E + AF +K E P+L + ++G VL Q+D
Sbjct: 1240 LTRKDFPFRWGAEQEAAFTKLKRLFAEEPVLRMFDPEAVTTVETDCSGFALGGVLTQEDG 1419
Query: 1407 TGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKR 1444
TG H + + S++ + E Y + +K A+ WA R
Sbjct: 1420 TG-AAHPVAFHSQRLSPAEYNYPIHDKELLAV-WACLR 1527
>CB065382 similar to PIR|T09671|T096 RPE15 protein - alfalfa (fragment),
partial (9%)
Length = 624
Score = 152 bits (384), Expect = 1e-36
Identities = 98/172 (56%), Positives = 111/172 (63%)
Frame = -3
Query: 271 RFNNNNKISKLGLLSLRYRCYMLSCFQLYSREGIVQLDRVSPHLIRCLQGSGLISNATFI 330
RF NN+ ++L L L Y+CYMLS +LY EG Q DR S HLIR L GSGL SN I
Sbjct: 517 RFTNNDSSNRLDLPFL*YQCYMLSSSRLYFSEGTAQSDRGSLHLIRYLPGSGLTSNVISI 338
Query: 331 KVP*VMMSRGVML*SIS*RSSSIKGS*LLRIMSHTSSTILFQIMPL*I*SKCVKKLRGLM 390
KV VMMS+ ML*+ *RSS K S*LLR S SST LFQI L* * + ++KL L
Sbjct: 337 KVLWVMMSKDAML*NTL*RSSLTKES*LLRTTSLMSSTTLFQITLL*T*LRYMRKLPDLT 158
Query: 391 SAMSQLLWCLCTSSCAKLLCSVMIMPSVWDVSVILWVVILFKKTSKA**MII 442
S M QLLWC TSS AK LC MIMP + S+ILWV LFK TS+A** I
Sbjct: 157 SVMLQLLWCHYTSSYAKPLCLTMIMPIAKNDSIILWVAALFKMTSRA**TTI 2
>AL366605
Length = 422
Score = 149 bits (376), Expect = 1e-35
Identities = 82/119 (68%), Positives = 93/119 (77%)
Frame = -1
Query: 5 CQKWMSLKSSRFRTSTGTTG*LALKITSSNTSGRWAITKTMIPL*STVFRIV*WRMPQSG 64
CQ+WMSL++S+ + STGTTG*L K TSSNTS RWAITKTMIPL*ST RIV*W+M QSG
Sbjct: 359 CQRWMSLRNSKSQISTGTTG*LVPKTTSSNTSERWAITKTMIPL*STASRIV*WKMLQSG 180
Query: 65 ILV*VRMTSIPLMS*PPLSRAIMGLTLD*GQIGSFSGPYLRRRRKVSVNMRKGGEGQLP 123
ILV* +M SIP M+*P LSRA MGLT D* + G+ S LRRRRK SVN + G GQLP
Sbjct: 179 ILV*AKMISIPSMN*PLLSRATMGLTPD*SRTGNSSDLSLRRRRKASVNTHRDGGGQLP 3
>AL375832
Length = 535
Score = 132 bits (333), Expect = 1e-30
Identities = 87/164 (53%), Positives = 95/164 (57%), Gaps = 10/164 (6%)
Frame = +1
Query: 834 GLLMLSLKKPLDLVSGLHLLHHGGIATNWDAIDIPSIMHVSE*CVLLLKCFVFKITILSL 893
GLLMLSLKK LDLVSGLHLLH + + KITILSL
Sbjct: 1 GLLMLSLKKQLDLVSGLHLLHQEALRVIGTPLTFLQSCMFPSNASCCFSALFSKITILSL 180
Query: 894 CPKRE*YFL*GHVCFGIAVD**NFVVSSTTTF-LVLFP---------LETMVMPEKTKTS 943
CPKRE*YFL*G VCFGIAV * VVS TT F LV F L + +KT
Sbjct: 181 CPKRE*YFL*GRVCFGIAV**IKIVVSFTTAFFLVPFSWKNGNARKNLNVCIFLLISKTC 360
Query: 944 VFSY*FQKSA*KKNSF*NHPIIICRLNHNKPVEHSNPTVPPNFD 987
+ ++K +KNSF*NHPIIICRLNHNKPVEHSN PNFD
Sbjct: 361 MKKKKYKK---QKNSF*NHPIIICRLNHNKPVEHSNSMPLPNFD 483
Score = 67.0 bits (162), Expect = 7e-11
Identities = 61/156 (39%), Positives = 70/156 (44%), Gaps = 7/156 (4%)
Frame = +3
Query: 856 GGIATNWDAIDIPSIMHVSE*CVLLLKCFVFKITILSLCPKRE*YFL*GHVCFG-IAVD* 914
GGIA++WDAIDIPSIMHVSE*CVLLL FVFK PK F F +
Sbjct: 66 GGIASDWDAIDIPSIMHVSE*CVLLL*RFVFKNNNPLALPKARVIFSVRACLFRHCRLMN 245
Query: 915 *NFVVSSTTTFLVLFPLETMVMPEKTKTSVFSY*FQKSA*KKNSF*NHPIIICRLNHNKP 974
N F F LE +K K F F+ KK + + NH
Sbjct: 246 KNCRFFHDCFFFSAFFLEKW*CQKKPKRLYFLINFKNLHEKKKIQKTKKLFLKSSNHYMQ 425
Query: 975 VEH--SNPT----VPPNFDFPVYEAEDEEGDDIPYE 1004
VE + T FPVYE + EGDDIPYE
Sbjct: 426 VEP**TR*TQ*FYASSKL*FPVYEPKMREGDDIPYE 533
>AL375831
Length = 467
Score = 85.1 bits (209), Expect(2) = 2e-29
Identities = 42/44 (95%), Positives = 42/44 (95%)
Frame = +3
Query: 1 TFA*CQKWMSLKSSRFRTSTGTTG*LALKITSSNTSGRWAITKT 44
TFA*CQKWM LKSSRFRTSTGTTG*L LKITSSNTSGRWAITKT
Sbjct: 234 TFA*CQKWMFLKSSRFRTSTGTTG*LVLKITSSNTSGRWAITKT 365
Score = 64.3 bits (155), Expect(2) = 2e-29
Identities = 33/37 (89%), Positives = 35/37 (94%)
Frame = +1
Query: 41 ITKTMIPL*STVFRIV*WRMPQSGILV*VRMTSIPLM 77
+ + MIPL*STVFRIV*WRMPQSGILV*VRMTSIPLM
Sbjct: 355 LQRQMIPL*STVFRIV*WRMPQSGILV*VRMTSIPLM 465
>BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana}, partial
(10%)
Length = 624
Score = 113 bits (282), Expect = 9e-25
Identities = 62/196 (31%), Positives = 97/196 (48%)
Frame = +2
Query: 1747 RFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWM 1806
R+L D LYK+ D + +RCV E E ++ H + H K+ +AG++W
Sbjct: 17 RYLWDEPFLYKQCADNIYIRCVAEEEIPGILFHCHGSNYAGHFAVSKTVSKIQQAGFWWP 196
Query: 1807 AMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRF 1866
M D + + KC CQ + N + F +WGID +G +N ++
Sbjct: 197 TMFKDAHSFISKCDPCQRQGNIS*RNEMPQNFILEVEVFDVWGIDFMGPFPSSYNN--KY 370
Query: 1867 ILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALC 1926
ILVA+DY +KWVEA + VV K K+ I R+GVP +I+D G++ N V + L
Sbjct: 371 ILVAVDYVSKWVEAIASPTNDATVVVKMFKSVIFPRFGVPRVVISDGGSHFINKVFEKLL 550
Query: 1927 EEFKIEHHNSSPYRPQ 1942
++ + H ++ Y PQ
Sbjct: 551 KKNGVRHKVATAYHPQ 598
>AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thaliana
chromosome II BAC F26H6; putative retroelement pol
polyprotein, partial (1%)
Length = 488
Score = 77.4 bits (189), Expect(2) = 2e-22
Identities = 55/125 (44%), Positives = 64/125 (51%), Gaps = 16/125 (12%)
Frame = +2
Query: 741 WTLMHPTVACWEDRGYTM----------------QGLLRELLSKV*PLKVQSQRKLGLLW 784
W M WED GY LLRELL K KVQS R+L L W
Sbjct: 17 WISMLRIAVSWEDLGYMTLAR*PLPYTRS*NL*RMDLLRELLFKGCLWKVQSPRRLELQW 196
Query: 785 LH*RMLREPFKKVRLPAGAR*YSSVRTSVKKVSGSPRHQGFPRESSTVQGLLMLSLKKPL 844
L *R R F++ RLP GA * +SVR S +KVS SP+H+ PRE V GL + LK+ L
Sbjct: 197 LL*RTPRRLFRRDRLPTGAS*SNSVRISERKVSDSPQHRVSPRELFIVPGLSIHLLKRWL 376
Query: 845 DLVSG 849
DL G
Sbjct: 377 DLFLG 391
Score = 48.5 bits (114), Expect(2) = 2e-22
Identities = 21/26 (80%), Positives = 24/26 (91%)
Frame = +1
Query: 856 GGIATNWDAIDIPSIMHVSE*CVLLL 881
GGIA +WDA+D+PSIMHVS *CVLLL
Sbjct: 409 GGIAKDWDAVDVPSIMHVSX*CVLLL 486
>BG586308 weakly similar to PIR|F84528|F8 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 686
Score = 60.8 bits (146), Expect(2) = 5e-18
Identities = 39/122 (31%), Positives = 68/122 (54%), Gaps = 4/122 (3%)
Frame = -3
Query: 1976 LHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL---RVIMEAKLSEAEWCQSRYDQL 2032
L +RT R +T +TPFS+ + +EA+ P EV + SL R+ +L+ ++ L
Sbjct: 462 LWSHRTNPRGATKSTPFSMAHRVEAMAPAEVNVTSL*RSRMPQNIELNN----DRLFNAL 295
Query: 2033 NLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRKISQQPD-PRGKWTPNY 2091
IEE+R A+ R Q+YQ ++++ ++K V + K+G++VL + + GK N+
Sbjct: 294 ETIEERRDQALLRIQNYQHQIESYYNKTVKSQPLKLGDIVLCKVFENTKELNAGKLGTNW 115
Query: 2092 EG 2093
EG
Sbjct: 114 EG 109
Score = 50.4 bits (119), Expect(2) = 5e-18
Identities = 22/52 (42%), Positives = 35/52 (67%)
Frame = -2
Query: 1903 YGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI 1954
+G+P +I+TDNG++ +N + CE ++I + +SP PQ NG EA+NK I
Sbjct: 685 HGLPYEIVTDNGSHFISNKFREFCERWRIRLNTASPRYPQSNGQAEASNKII 530
>BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin cluster;
Ty3-Gypsy type {Oryza sativa}, partial (15%)
Length = 716
Score = 84.7 bits (208), Expect = 3e-16
Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 5/230 (2%)
Frame = +2
Query: 1077 VEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKK 1136
++ I P P+ R +P +K +++ ++ GF+ YP V ++ + KK
Sbjct: 35 IDFGIDLLPNMNPI*IPSYRINPLKLKVLKLQLKDLLEKGFIQPSIYP*GVV-VLFLKKK 211
Query: 1137 DGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDRE 1196
DG +RM +D+ LN + K +PLP ID L DN SK F +D G +Q ++ ED
Sbjct: 212 DGFLRMSIDYPQLNNVNIKIKYPLPLIDELFDNLQGSKWFFKIDLRLG*HQHRVIGEDVP 391
Query: 1197 KTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQH 1256
KT+F +G + VM FG N + M +F D + V V+ +D+++ S +E +H
Sbjct: 392 KTAFRIRYGHYEILVMSFG*TNPPMAFMELMNRVFQDYLDSLVIVFSNDILIYSKNENEH 571
Query: 1257 VEYLTKMFERLRKYKLRLNPNKCTFG-----VRSGKLLGFIVSQKGIEVD 1301
+L + L+ L C V G ++S +G++VD
Sbjct: 572 ENHLRLALKVLKDIGL------CQISYV*ILVEVGFFSLHVISGEGLKVD 703
>TC77595 weakly similar to PIR|T18350|T18350 probable pol polyprotein - rice
blast fungus gypsy retroelement (fragment), partial (14%)
Length = 1708
Score = 79.0 bits (193), Expect = 2e-14
Identities = 75/353 (21%), Positives = 141/353 (39%), Gaps = 15/353 (4%)
Frame = +2
Query: 1775 QLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPH 1834
+L+ + HD T H G + +++ ++W ++ R C C IH+
Sbjct: 176 KLVQESHDSTAAGHP-GRNGTLEIVSRKFFWPGQSQTVRRFVRNCDVC----GGIHIWRQ 340
Query: 1835 ALNVMSSPWPF-----SMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQ 1889
A P P S +D I + P G +++ V +D +K V + +
Sbjct: 341 AKRGFLKPLPVPNRLHSDLSMDFITSLPPTRGRGSQYLWVIVDRLSKSVTLEEMDTMEAE 520
Query: 1890 VVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEA 1949
A+ + +G+P I++D G+N + C + S+ Y PQ +G E
Sbjct: 521 ACAQRFLSCHYRFHGMPQSIVSDRGSNWVGRFWREFCRLTGVTQLLSTSYHPQTDGGTER 700
Query: 1950 ANKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEI 2008
N+ I+ +++ V +D W ++LP R SS GATPF + +G V P+
Sbjct: 701 WNQEIQAVLRAYVCWSQDNWGDLLPTVQLALRNRHNSSIGATPFFVEHGYH-VDPIPTVE 877
Query: 2009 PSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKV 2068
+ V+ E + + + D I+ + + A R ++ + + D+ ++V
Sbjct: 878 DTGGVVSEGEAAAQLLVKRMKDVTGFIQAEIVAAQQRSEASANKRRCPADR------YQV 1039
Query: 2069 GELV---LKRKISQQPDPRGKW------TPNYEGPYVVKKAFSGGALILTHMD 2112
G+ V + S +P + W + P+VV+ G H+D
Sbjct: 1040 GDKVWLNVSNYKSPRPSKKLDWLHHKYEVTRFVTPHVVELNVPGTVYPKFHVD 1198
>BG587127 weakly similar to PIR|H84506|H84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(13%)
Length = 415
Score = 65.9 bits (159), Expect = 2e-10
Identities = 38/109 (34%), Positives = 55/109 (49%)
Frame = +3
Query: 1564 GAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQI 1623
G + SP + + R+ F +NN YEA I G+ A ++I+++ Y DS LV +Q
Sbjct: 3 GIRLTSPTNEILKQSFRLEFHASNNETNYEALIAGVRLAHGLKIRNIHAYCDSQLVASQF 182
Query: 1624 KGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSS 1672
GE+E + Y ++L L IPR EN ADALA L+S
Sbjct: 183 SGEYEARDELMDTYLKLVQKLAQKLDYFALTRIPRSENVQADALAALAS 329
>BE942785
Length = 460
Score = 56.6 bits (135), Expect = 1e-07
Identities = 34/56 (60%), Positives = 40/56 (70%)
Frame = -3
Query: 759 QGLLRELLSKV*PLKVQSQRKLGLLWLH*RMLREPFKKVRLPAGAR*YSSVRTSVK 814
QGL R L K * KV+S R + L WL *RM REP K+V+LPAGA *YS VRTS++
Sbjct: 302 QGLQRGPLFKD*LSKVRSPRGMELQWLL*RMHREPSKRVKLPAGAG*YSFVRTSIR 135
>BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana},
partial (6%)
Length = 469
Score = 49.3 bits (116), Expect = 2e-05
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +1
Query: 2031 QLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRKISQQPDPRGKWTPN 2090
+LN +EE R+DA + Y+ R K D+++ REF+ GELVL + P GK +
Sbjct: 103 ELNELEELRLDAYENAKIYKERTKKWHDRRIIRREFREGELVLLFNSRLKLFP-GKLRSH 279
Query: 2091 YEGPYVVKKAFSGGAL-ILTHMDGVELPNPVNADIVKKY 2128
+ GP+ VK GA+ + + G P VN +K Y
Sbjct: 280 WSGPFQVKNVMPSGAVEVWSESTG---PFTVNGQRLKHY 387
>TC83629 weakly similar to GP|6692261|gb|AAF24611.1| putative RNase H
{Arabidopsis thaliana}, partial (21%)
Length = 1071
Score = 48.9 bits (115), Expect = 2e-05
Identities = 34/113 (30%), Positives = 51/113 (45%)
Frame = +2
Query: 1549 GLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIK 1608
G V+ +N G GA++++ G + + L T AEY A + G++ A K
Sbjct: 563 G*VW*SNINRGPAGAGALLLAEDGSLLYGFRQGLGHQTKESAEYRALLLGLKHASMKGFK 742
Query: 1609 HLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDEN 1661
++ GDS LVINQI W+ +L A L F + HI R+ N
Sbjct: 743 YVTAKGDSELVINQILDPWKIKDEHLKKLCAEALELSDNFHSFRIQHISRERN 901
>CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product {Drosophila
melanogaster}, partial (20%)
Length = 192
Score = 48.9 bits (115), Expect = 2e-05
Identities = 24/56 (42%), Positives = 31/56 (54%)
Frame = +1
Query: 1394 DESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYL 1449
D +G L Q+DE EH I Y S+ T E YT++E+ C A WA + RHYL
Sbjct: 7 DWGIGAGLSQKDEENH-EHPIAYASRLLTAAERNYTVVERECLAAIWAIRNFRHYL 171
>TC92306
Length = 521
Score = 48.5 bits (114), Expect = 3e-05
Identities = 25/73 (34%), Positives = 37/73 (50%)
Frame = +2
Query: 1596 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHH 1655
I G+ EA + +H+ + GD V Q G W+ ++ NL + A L + F V + H
Sbjct: 2 ILGLNEARNQGYEHVHVRGDFQXVCKQFXGSWKVNNPNLRNLCNXAVELKSNFKSVSVEH 181
Query: 1656 IPRDENQMADALA 1668
+PR N ADA A
Sbjct: 182 VPRGXNXAADAQA 220
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.340 0.149 0.494
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,696,019
Number of Sequences: 36976
Number of extensions: 1073702
Number of successful extensions: 8457
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 4477
Number of HSP's successfully gapped in prelim test: 369
Number of HSP's that attempted gapping in prelim test: 3410
Number of HSP's gapped (non-prelim): 5622
length of query: 2129
length of database: 9,014,727
effective HSP length: 111
effective length of query: 2018
effective length of database: 4,910,391
effective search space: 9909169038
effective search space used: 9909169038
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 66 (30.0 bits)
Medicago: description of AC139745.5