TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139744.1 + phase: 0 
         (48 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CA921921                                                               25  4.9
TC91912 similar to PIR|C84653|C84653 hypothetical protein At2g25...    25  6.4

>CA921921 
          Length = 832

 Score = 25.4 bits (54), Expect = 4.9
 Identities = 14/39 (35%), Positives = 22/39 (55%)
 Frame = -1

Query: 1   MFFHASFFSLLQSSNLLSAVLCLVKELDYPSLEVVEMAV 39
           MFF    +  L+ S  +S+++C    L YPSL VV  ++
Sbjct: 205 MFFFIIGYLFLK*S--ISSIVCCSNSLTYPSLSVVRASL 95


>TC91912 similar to PIR|C84653|C84653 hypothetical protein At2g25830
           [imported] - Arabidopsis thaliana, partial (31%)
          Length = 663

 Score = 25.0 bits (53), Expect = 6.4
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 13  SSNLLSAVLCLVKELDYPSLEVVEMAVK 40
           S++ L+AVL  VKELD P  ++VE  +K
Sbjct: 384 SNSALAAVLEKVKELDVPK-DIVERNIK 464


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.327    0.137    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,713,111
Number of Sequences: 36976
Number of extensions: 16479
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of query: 48
length of database: 9,014,727
effective HSP length: 24
effective length of query: 24
effective length of database: 8,127,303
effective search space: 195055272
effective search space used: 195055272
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)