BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139708.3 + phase: 0
(150 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC90811 weakly similar to GP|2702273|gb|AAB91976.1| unknown prot... 279 4e-76
TC76761 similar to GP|19424061|gb|AAL87257.1 unknown protein {Ar... 74 2e-14
TC76760 similar to GP|19424061|gb|AAL87257.1 unknown protein {Ar... 73 5e-14
TC85617 similar to GP|2369766|emb|CAA04664.1 hypothetical protei... 69 9e-13
TC76763 similar to GP|19424061|gb|AAL87257.1 unknown protein {Ar... 40 5e-04
BG583119 30 0.37
BQ752048 weakly similar to GP|7303636|gb|A CG13214-PA {Drosophil... 28 1.8
TC77241 similar to PIR|B96497|B96497 unknown protein [imported] ... 28 1.8
TC83494 similar to GP|5107088|gb|AAD39957.1| small zinc finger-l... 27 3.1
TC79872 similar to GP|22002462|dbj|BAC06495. mitochondrial uncou... 27 3.1
BF650458 homologue to GP|22535636|dbj hypothetical protein~predi... 27 4.1
CA989687 similar to GP|15795126|dbj| gene_id:MGH6.8~unknown prot... 26 5.3
BF518791 similar to PIR|E75173|E751 stage II sporulation protein... 26 5.3
AL369126 similar to GP|12324950|gb| putative aminopeptidase; 453... 26 7.0
TC77015 similar to GP|8489786|gb|AAF75749.1| dehydration-induced... 26 7.0
TC85392 homologue to PIR|JC4786|JC4786 dnaK-type molecular chape... 26 7.0
TC77014 weakly similar to GP|22831210|dbj|BAC16068. contains EST... 26 7.0
TC81788 similar to PIR|E86217|E86217 protein T27G7.10 [imported]... 25 9.1
TC77010 similar to PIR|S59560|S59560 histone H1.41 - garden pea,... 25 9.1
TC88081 similar to GP|17065340|gb|AAL32824.1 putative Na+/H+ ant... 25 9.1
>TC90811 weakly similar to GP|2702273|gb|AAB91976.1| unknown protein
{Arabidopsis thaliana}, partial (9%)
Length = 740
Score = 279 bits (713), Expect = 4e-76
Identities = 133/138 (96%), Positives = 135/138 (97%)
Frame = +3
Query: 1 MEAEVVGTDTPDKLAGFIFMCNRMTKPECFSYRVFALPAGRKHIVERINPGMHLFLFDTD 60
MEAEVVGTDTPDKLAGFIFMCNRMTKPECFSYRVFALPAGRKHIVERINPGMHLFLFDTD
Sbjct: 105 MEAEVVGTDTPDKLAGFIFMCNRMTKPECFSYRVFALPAGRKHIVERINPGMHLFLFDTD 284
Query: 61 VKLLYGIYLATSTGMLNIEPYAFGGRFPAQVSFKILKDCLPLPENDFKHAIKDNYQKHYK 120
VKLLYGIYLATSTGMLNIEPYAFGGRFPAQVSFKILKDCLPLPENDFKHAIKDNYQKHYK
Sbjct: 285 VKLLYGIYLATSTGMLNIEPYAFGGRFPAQVSFKILKDCLPLPENDFKHAIKDNYQKHYK 464
Query: 121 FNPELNIRQVSSAIVTFR 138
FNPELNIRQV+S + FR
Sbjct: 465 FNPELNIRQVTSLLEMFR 518
>TC76761 similar to GP|19424061|gb|AAL87257.1 unknown protein {Arabidopsis
thaliana}, partial (52%)
Length = 1356
Score = 74.3 bits (181), Expect = 2e-14
Identities = 47/136 (34%), Positives = 68/136 (49%), Gaps = 10/136 (7%)
Frame = +3
Query: 12 DKLAGFIFMCNRMTKPECFSYRVFALPAGRKHIVERINPGMHLFLFDTDVKLLYGIYLAT 71
+ + G+IF+CN T E ++F LP + V I PG+ LFL++ L+G++ A
Sbjct: 648 ETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGVFEAA 827
Query: 72 STGMLNIEPYAF-------GGRFPAQVSFKILKDCLPLPENDFKHAIKDNYQKHY---KF 121
S G NI+P A+ RFPAQV K C PL E+ F+ + HY KF
Sbjct: 828 SFGGTNIDPTAWEDKKCAGESRFPAQVRVLTRKTCEPLEEDSFRPVL-----HHYDGPKF 992
Query: 122 NPELNIRQVSSAIVTF 137
ELN+ + S + F
Sbjct: 993 RLELNVPEALSLLDIF 1040
>TC76760 similar to GP|19424061|gb|AAL87257.1 unknown protein {Arabidopsis
thaliana}, partial (53%)
Length = 1419
Score = 72.8 bits (177), Expect = 5e-14
Identities = 47/136 (34%), Positives = 68/136 (49%), Gaps = 10/136 (7%)
Frame = +1
Query: 12 DKLAGFIFMCNRMTKPECFSYRVFALPAGRKHIVERINPGMHLFLFDTDVKLLYGIYLAT 71
+ + G+IF+CN T E ++F LP + V I PG+ LFL++ L+GI+ A
Sbjct: 637 ETIGGYIFVCNNDTMAENLKRQIFGLPPRYRDSVRTITPGLPLFLYNYSTHQLHGIFEAA 816
Query: 72 STGMLNIEPYAF-------GGRFPAQVSFKILKDCLPLPENDFKHAIKDNYQKHY---KF 121
S G NI+P A+ RFPAQV K C PL E+ F+ + HY KF
Sbjct: 817 SFGGSNIDPTAWEDKKCPGESRFPAQVQVITRKVCEPLEEDSFRPIL-----HHYDGPKF 981
Query: 122 NPELNIRQVSSAIVTF 137
EL++ + S + F
Sbjct: 982 RLELSVSEALSLLDIF 1029
>TC85617 similar to GP|2369766|emb|CAA04664.1 hypothetical protein {Citrus x
paradisi}, partial (85%)
Length = 1489
Score = 68.6 bits (166), Expect = 9e-13
Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Frame = +1
Query: 14 LAGFIFMCNRMTKPECFSYRVFALPAGRKHIVERINPGMHLFLFDTDVKLLYGIYLATST 73
L G+IF+CN T E ++F LP + V I PG+ LFL++ L+G++ A S
Sbjct: 574 LGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGVFEAASF 753
Query: 74 GMLNIEPYAF-------GGRFPAQVSFKILKDCLPLPENDFKHAIKDNYQKHY---KFNP 123
G NI+P A+ RFPAQV ++ C L E+ F+ + HY KF
Sbjct: 754 GGSNIDPTAWEDKKCKGESRFPAQVRIRVRNICKALEEDSFRPVL-----HHYDGPKFRL 918
Query: 124 ELNI 127
EL++
Sbjct: 919 ELSV 930
>TC76763 similar to GP|19424061|gb|AAL87257.1 unknown protein {Arabidopsis
thaliana}, partial (36%)
Length = 749
Score = 39.7 bits (91), Expect = 5e-04
Identities = 33/93 (35%), Positives = 43/93 (45%), Gaps = 11/93 (11%)
Frame = +1
Query: 49 NP-GMHLFLFDTDVKLLYGIYLATSTGMLNIEPYAFG-------GRFPAQVSFKILKDCL 100
NP G F L+GI+ A S G NI+P A+ RFPAQV K C
Sbjct: 97 NPQGYPFFCTTIPTHQLHGIFEAASFGGSNIDPTAWEDKKCPGESRFPAQVQVITRKVCE 276
Query: 101 PLPENDFKHAIKDNYQKHY---KFNPELNIRQV 130
PL E+ F+ + HY KF EL++ +V
Sbjct: 277 PLEEDSFRPIL-----HHYDGPKFRLELSVSEV 360
>BG583119
Length = 708
Score = 30.0 bits (66), Expect = 0.37
Identities = 18/42 (42%), Positives = 24/42 (56%), Gaps = 2/42 (4%)
Frame = -1
Query: 83 FGGRFPAQVSFKILKDCLP--LPENDFKHAIKDNYQKHYKFN 122
F R SFKI+K+CLP L N K + N +KH+KF+
Sbjct: 153 FKNRGSKDHSFKIIKNCLPSFLTSNKNK-KVYHNIEKHHKFS 31
>BQ752048 weakly similar to GP|7303636|gb|A CG13214-PA {Drosophila
melanogaster}, partial (6%)
Length = 657
Score = 27.7 bits (60), Expect = 1.8
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -2
Query: 108 KHAIKDNYQKHYKFNPELNIRQVSSAIVTFRFCFCFLCFA 147
K + Y H +P L RQ F FC CFL FA
Sbjct: 362 KGVLDPRYAGHAHVSPRLASRQ------NFSFCLCFLLFA 261
>TC77241 similar to PIR|B96497|B96497 unknown protein [imported] -
Arabidopsis thaliana, partial (55%)
Length = 1049
Score = 27.7 bits (60), Expect = 1.8
Identities = 13/32 (40%), Positives = 17/32 (52%), Gaps = 2/32 (6%)
Frame = +1
Query: 121 FNPELNIRQVSSAIVTFR--FCFCFLCFAFSF 150
F P L+ Q + +T+ FCFCF C F F
Sbjct: 37 FIPFLSFHQQQNKSLTYYHGFCFCFCCCCFHF 132
>TC83494 similar to GP|5107088|gb|AAD39957.1| small zinc finger-like protein
{Pinus taeda}, partial (85%)
Length = 433
Score = 26.9 bits (58), Expect = 3.1
Identities = 14/38 (36%), Positives = 21/38 (54%)
Frame = -3
Query: 37 LPAGRKHIVERINPGMHLFLFDTDVKLLYGIYLATSTG 74
+ AG H+VE+ NP +HLF + Y I++ T G
Sbjct: 191 IEAGLGHLVEQFNPILHLFFSHSK----YLIFIETRRG 90
>TC79872 similar to GP|22002462|dbj|BAC06495. mitochondrial uncoupling
protein {Helicodiceros muscivorus}, partial (46%)
Length = 861
Score = 26.9 bits (58), Expect = 3.1
Identities = 16/56 (28%), Positives = 23/56 (40%), Gaps = 5/56 (8%)
Frame = +3
Query: 17 FIFMCNRMTKPECFSYRVFALPAGRKHIVERINPGMHLFLFDT-----DVKLLYGI 67
F C R + R+ +P V N G+HL+LF T DV +Y +
Sbjct: 516 FWICCGRKILFRTSAMRIEVMPHSHMFFVVE*NVGLHLYLFPTCMWVVDVPFIYSL 683
>BF650458 homologue to GP|22535636|dbj hypothetical protein~predicted by
GENSCAN etc. {Oryza sativa (japonica cultivar-group)},
partial (10%)
Length = 221
Score = 26.6 bits (57), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +2
Query: 123 PELNIRQVSSAIVTFR--FCFCFLCFAFSF 150
P L+ Q + +T+ FCFCF C F F
Sbjct: 5 PFLSFHQQQNKSLTYYHGFCFCFCCCCFHF 94
>CA989687 similar to GP|15795126|dbj| gene_id:MGH6.8~unknown protein
{Arabidopsis thaliana}, partial (62%)
Length = 469
Score = 26.2 bits (56), Expect = 5.3
Identities = 13/31 (41%), Positives = 14/31 (44%)
Frame = +3
Query: 114 NYQKHYKFNPELNIRQVSSAIVTFRFCFCFL 144
NY H N NI V + F FC CFL
Sbjct: 378 NYVFHMYIN--FNINYVFHMYINFNFCVCFL 464
>BF518791 similar to PIR|E75173|E751 stage II sporulation protein m related
PAB0377 - Pyrococcus abyssi (strain Orsay), partial (8%)
Length = 375
Score = 26.2 bits (56), Expect = 5.3
Identities = 11/31 (35%), Positives = 19/31 (60%)
Frame = -1
Query: 114 NYQKHYKFNPELNIRQVSSAIVTFRFCFCFL 144
+YQ HY+F+ + IR+ S+ + F F +L
Sbjct: 363 HYQFHYQFHSPIPIRRNSTIFILPSFTFIYL 271
>AL369126 similar to GP|12324950|gb| putative aminopeptidase; 4537-10989
{Arabidopsis thaliana}, partial (2%)
Length = 420
Score = 25.8 bits (55), Expect = 7.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 108 KHAIKDNYQKHYKFNPELNIRQVSSAIVTFRFCFC 142
K +K N+ Y F + +R + I F+F FC
Sbjct: 332 KKTLKSNHNSSYFFTGQATLRFIYKHIHRFQFPFC 228
>TC77015 similar to GP|8489786|gb|AAF75749.1| dehydration-induced protein
ERD15 {Lycopersicon esculentum}, partial (25%)
Length = 754
Score = 25.8 bits (55), Expect = 7.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 108 KHAIKDNYQKHYKFNPELNIRQVSSAIVTFRFCFC 142
K +K N+ Y F + +R + I F+F FC
Sbjct: 697 KKTLKSNHNSSYFFTGQATLRFIYKHIHRFQFPFC 593
>TC85392 homologue to PIR|JC4786|JC4786 dnaK-type molecular chaperone
hsc70-3 - tomato, complete
Length = 2295
Score = 25.8 bits (55), Expect = 7.0
Identities = 18/65 (27%), Positives = 26/65 (39%)
Frame = -2
Query: 80 PYAFGGRFPAQVSFKILKDCLPLPENDFKHAIKDNYQKHYKFNPELNIRQVSSAIVTFRF 139
P A FPA +S ++L+ QK F + +V S + +F
Sbjct: 161 PIAGPSPFPAIISQELLR------------------QKKLGFE*RIKKTRVYSVVNELKF 36
Query: 140 CFCFL 144
CFCFL
Sbjct: 35 CFCFL 21
>TC77014 weakly similar to GP|22831210|dbj|BAC16068. contains ESTs
C96778(C10671) D22278(C10671)~unknown protein {Oryza
sativa (japonica cultivar-group)}, partial (27%)
Length = 744
Score = 25.8 bits (55), Expect = 7.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 108 KHAIKDNYQKHYKFNPELNIRQVSSAIVTFRFCFC 142
K +K N+ Y F + +R + I F+F FC
Sbjct: 633 KKTLKSNHNSSYFFTGQATLRFIYKHIHRFQFPFC 529
>TC81788 similar to PIR|E86217|E86217 protein T27G7.10 [imported] -
Arabidopsis thaliana, partial (6%)
Length = 710
Score = 25.4 bits (54), Expect = 9.1
Identities = 11/31 (35%), Positives = 18/31 (57%)
Frame = -2
Query: 109 HAIKDNYQKHYKFNPELNIRQVSSAIVTFRF 139
H+ + +H FNP++ + V+ VTFRF
Sbjct: 334 HSPTPSMSQHPLFNPKIGAKIVAKFEVTFRF 242
>TC77010 similar to PIR|S59560|S59560 histone H1.41 - garden pea, partial
(82%)
Length = 1535
Score = 25.4 bits (54), Expect = 9.1
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -3
Query: 45 VERINPGMHLFLFDTDVKLLYGIYLAT 71
+ ++NP H F T V L+G + T
Sbjct: 657 IPKLNPNFHFLAFFTGVLTLFGFFATT 577
>TC88081 similar to GP|17065340|gb|AAL32824.1 putative Na+/H+ antiporter
{Arabidopsis thaliana}, partial (3%)
Length = 1154
Score = 25.4 bits (54), Expect = 9.1
Identities = 15/42 (35%), Positives = 24/42 (56%), Gaps = 9/42 (21%)
Frame = -3
Query: 116 QKHYKF-NPELNIR-----QVSSAIVTFRFCF---CFLCFAF 148
Q H++F +P LN++ + S IV F +C+ CFLC +
Sbjct: 1149 QHHFQFFSPFLNLKNNKL*EFS*PIVKFSWCYLMVCFLCIMY 1024
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.331 0.146 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,774,702
Number of Sequences: 36976
Number of extensions: 85662
Number of successful extensions: 890
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of query: 150
length of database: 9,014,727
effective HSP length: 87
effective length of query: 63
effective length of database: 5,797,815
effective search space: 365262345
effective search space used: 365262345
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (25.4 bits)
Medicago: description of AC139708.3