TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139600.9 - phase: 0 /pseudo
         (145 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF635063 weakly similar to PIR|F84486|F84 probable retroelement ...   231  1e-61
BG646342 weakly similar to PIR|F84486|F84 probable retroelement ...   134  1e-32
BF648150 similar to GP|14586969|gb| pol polyprotein {Citrus x pa...    45  1e-05
BG587684 similar to GP|12858190|dbj evidence:NAS~putative~unclas...    30  0.44
TC91933 similar to GP|7270830|emb|CAB80511.1 protein kinase like...    26  4.9
TC83214 similar to SP|O49204|KAPS_CATRO Adenylylsulfate kinase  ...    26  6.4

>BF635063 weakly similar to PIR|F84486|F84 probable retroelement pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (4%)
          Length = 677

 Score =  231 bits (588), Expect = 1e-61
 Identities = 120/141 (85%), Positives = 129/141 (91%)
 Frame = -2

Query: 1   TMGSKWDIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMSRAEKTEMVDKAR 60
           TMGSK DIEKFTGDNDFGL KVKMEA+LIQQKCEKALKG+ SLPVTMSRAEKTEMVDKAR
Sbjct: 571 TMGSKRDIEKFTGDNDFGLWKVKMEAVLIQQKCEKALKGEVSLPVTMSRAEKTEMVDKAR 392

Query: 61  SVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSKAIME 120
           S IVLCLGDKVLR+VAKE TAASMW KL +LYMTKSL H+QFLKQ LYSF+MV+SKAIME
Sbjct: 391 SAIVLCLGDKVLREVAKERTAASMWAKL*SLYMTKSLAHRQFLKQQLYSFRMVESKAIME 212

Query: 121 LLVEFNKIIGDLENIEVRLED 141
            L EFNKI+ DLENIEV+LED
Sbjct: 211 QLTEFNKILDDLENIEVQLED 149


>BG646342 weakly similar to PIR|F84486|F84 probable retroelement pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (4%)
          Length = 599

 Score =  134 bits (338), Expect = 1e-32
 Identities = 72/87 (82%), Positives = 75/87 (85%)
 Frame = +2

Query: 59  ARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSKAI 118
           ARS IVLCLGDKVLR+VAKE TA SM  KLE LYMTKSL H+QFLKQ LYSFKMV+SKAI
Sbjct: 2   ARSAIVLCLGDKVLREVAKEPTATSMCAKLEYLYMTKSLAHRQFLKQQLYSFKMVESKAI 181

Query: 119 MELLVEFNKIIGDLENIEVRLEDVDAL 145
            ELLVEFNKIIGDLENIEV LED  AL
Sbjct: 182 TELLVEFNKIIGDLENIEVHLEDAGAL 262


>BF648150 similar to GP|14586969|gb| pol polyprotein {Citrus x paradisi},
           partial (3%)
          Length = 658

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 23/84 (27%), Positives = 43/84 (50%), Gaps = 7/84 (8%)
 Frame = +2

Query: 65  LCLG-------DKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSKA 117
           +CLG       D +        +A  +W KLE  YM +  T ++FL     ++KMV +K+
Sbjct: 197 ICLGHILNGMSDSLFDIYQSSPSAKDLWDKLETRYMREDATSKKFLVSHFNNYKMVDNKS 376

Query: 118 IMELLVEFNKIIGDLENIEVRLED 141
           +ME L E  +I+ + +   + +++
Sbjct: 377 VMEQLYEIERILNNYKQHNMNMDE 448


>BG587684 similar to GP|12858190|dbj evidence:NAS~putative~unclassifiable
           {Mus musculus}, partial (14%)
          Length = 819

 Score = 29.6 bits (65), Expect = 0.44
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 2   MGSKWDIEKFTGDNDFGLLK 21
           M +KWDIE F G+NDF +++
Sbjct: 735 MDTKWDIEIFIGENDFRVVE 794


>TC91933 similar to GP|7270830|emb|CAB80511.1 protein kinase like protein
           {Arabidopsis thaliana}, partial (9%)
          Length = 832

 Score = 26.2 bits (56), Expect = 4.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 21  KVKMEAMLIQQKCEKALKGKGSLPVTMSRAEKTEM 55
           K K E  L+  K +K  KGK  + +  SRAE+T++
Sbjct: 424 KTKEERRLL*LKKKKKKKGKSRV*LDFSRAERTKL 320


>TC83214 similar to SP|O49204|KAPS_CATRO Adenylylsulfate kinase  chloroplast
           precursor (EC 2.7.1.25) (APS kinase), partial (23%)
          Length = 603

 Score = 25.8 bits (55), Expect = 6.4
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 43  LPVTMSRAEKTEMVDKARSVIVLCLGDKVLRKVAKESTAASMWPKLE-ALYMTKSLTHQQ 101
           +P+       +  +D +RS   + +G  +L +  + STA ++W KL    + T  + H  
Sbjct: 292 IPLYFGILLSSSAIDDSRSSCAM-IGFNILLRQRRSSTALNLWRKLTIPNFSTVEVPHSM 116

Query: 102 FLK 104
           F K
Sbjct: 115 FWK 107


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,142,500
Number of Sequences: 36976
Number of extensions: 28796
Number of successful extensions: 120
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of query: 145
length of database: 9,014,727
effective HSP length: 87
effective length of query: 58
effective length of database: 5,797,815
effective search space: 336273270
effective search space used: 336273270
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)