BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139600.10 + phase: 0
(81 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC93386 similar to GP|21555769|gb|AAM63930.1 unknown {Arabidopsi... 173 1e-44
TC88379 similar to PIR|G96775|G96775 hypothetical protein F1M20.... 102 2e-23
TC89433 similar to GP|13277220|emb|CAC34409. ZF-HD homeobox prot... 77 1e-15
BF518886 similar to GP|13374061|emb ZF-HD homeobox protein {Flav... 75 3e-15
AW691889 similar to GP|9757750|dbj| gb|AAF24606.1~gene_id:MUF9.1... 72 4e-14
BG582576 similar to GP|21555769|gb| unknown {Arabidopsis thalian... 33 0.020
TC77397 homologue to PIR|S37159|S37159 NADPH--ferrihemoprotein r... 31 0.098
TC91406 similar to GP|4115922|gb|AAD03433.1| contains similarity... 28 0.64
TC85050 26 2.4
TC91376 weakly similar to GP|17065054|gb|AAL32681.1 putative pro... 26 2.4
TC89669 homologue to GP|1237082|emb|CAA65540.1 ADP-glucose pyrop... 26 2.4
BQ140050 weakly similar to PIR|T08413|T084 hypothetical protein ... 26 2.4
TC90344 weakly similar to PIR|H86282|H86282 protein F10B6.34 [im... 25 4.1
TC80397 similar to PIR|H71404|H71404 hypothetical protein d13195... 25 4.1
TC83601 weakly similar to GP|9454566|gb|AAF87889.1| scarecrow-li... 25 5.4
BQ147345 homologue to GP|22136958|gb| putative serine carboxypep... 25 5.4
TC86891 similar to PIR|D86244|D86244 protein Ser/Thr protein kin... 25 5.4
BF647384 weakly similar to PIR|T49042|T49 hypothetical protein T... 25 7.1
TC85408 homologue to PIR|S20869|S20869 tubulin beta-2 chain - ga... 25 7.1
TC91634 weakly similar to GP|21554410|gb|AAM63515.1 unknown {Ara... 25 7.1
>TC93386 similar to GP|21555769|gb|AAM63930.1 unknown {Arabidopsis
thaliana}, partial (56%)
Length = 495
Score = 173 bits (438), Expect = 1e-44
Identities = 81/81 (100%), Positives = 81/81 (100%)
Frame = +2
Query: 1 MRKRQVVVRRSEDPQRSVVKYGECQKNHAANVGGYAVDGCREFMPSTNGSLTCAACGCHR 60
MRKRQVVVRRSEDPQRSVVKYGECQKNHAANVGGYAVDGCREFMPSTNGSLTCAACGCHR
Sbjct: 161 MRKRQVVVRRSEDPQRSVVKYGECQKNHAANVGGYAVDGCREFMPSTNGSLTCAACGCHR 340
Query: 61 NFHKREVEVVSESSSPHSNGT 81
NFHKREVEVVSESSSPHSNGT
Sbjct: 341 NFHKREVEVVSESSSPHSNGT 403
>TC88379 similar to PIR|G96775|G96775 hypothetical protein F1M20.34
[imported] - Arabidopsis thaliana, partial (64%)
Length = 1108
Score = 102 bits (255), Expect = 2e-23
Identities = 48/65 (73%), Positives = 55/65 (83%), Gaps = 6/65 (9%)
Frame = +3
Query: 19 VKYGECQKNHAANVGGYAVDGCREFMPS----TNGSLTCAACGCHRNFHKREV--EVVSE 72
++YGECQKNHAAN+GGYAVDGCREFM S T+G+LTCAACGCHRNFH+REV EVV E
Sbjct: 66 IRYGECQKNHAANIGGYAVDGCREFMASTGEGTSGALTCAACGCHRNFHRREVQTEVVCE 245
Query: 73 SSSPH 77
S P+
Sbjct: 246 YSPPN 260
>TC89433 similar to GP|13277220|emb|CAC34409. ZF-HD homeobox protein
{Flaveria bidentis}, partial (52%)
Length = 1430
Score = 77.0 bits (188), Expect = 1e-15
Identities = 35/57 (61%), Positives = 40/57 (69%), Gaps = 6/57 (10%)
Frame = +1
Query: 18 VVKYGECQKNHAANVGGYAVDGCREFMPSTN------GSLTCAACGCHRNFHKREVE 68
VV Y EC KNH A +GG+A+DGC EFMPS S+ CAACGCHRNFH+RE E
Sbjct: 496 VVTYKECLKNHVATLGGHALDGCCEFMPSPTATSDDPASIKCAACGCHRNFHRREPE 666
>BF518886 similar to GP|13374061|emb ZF-HD homeobox protein {Flaveria
bidentis}, partial (25%)
Length = 548
Score = 75.5 bits (184), Expect = 3e-15
Identities = 31/54 (57%), Positives = 43/54 (79%), Gaps = 4/54 (7%)
Frame = +1
Query: 19 VKYGECQKNHAANVGGYAVDGCREFMPS----TNGSLTCAACGCHRNFHKREVE 68
V+Y ECQKNHA ++GG+AVDGC EF+ + T ++ CAACGCHRNFH++E++
Sbjct: 154 VRYKECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACGCHRNFHRKEID 315
>AW691889 similar to GP|9757750|dbj| gb|AAF24606.1~gene_id:MUF9.11~similar to
unknown protein {Arabidopsis thaliana}, partial (17%)
Length = 311
Score = 72.0 bits (175), Expect = 4e-14
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 5/60 (8%)
Frame = +3
Query: 21 YGECQKNHAANVGGYAVDGCREFM-----PSTNGSLTCAACGCHRNFHKREVEVVSESSS 75
Y EC +NHAA++G YA DGC EF PS SL CAACGCHRNFH++ + ES++
Sbjct: 96 YRECLRNHAASLGSYATDGCGEFTIDDSSPSAVNSLQCAACGCHRNFHRKITAITRESAA 275
>BG582576 similar to GP|21555769|gb| unknown {Arabidopsis thaliana},
partial (29%)
Length = 798
Score = 33.1 bits (74), Expect = 0.020
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -2
Query: 17 SVVKYGECQKNHAANVGGYAV 37
S ++Y ECQKNHA + GG+AV
Sbjct: 65 STMRYLECQKNHAVSFGGHAV 3
>TC77397 homologue to PIR|S37159|S37159 NADPH--ferrihemoprotein reductase (EC
1.6.2.4) - spring vetch, complete
Length = 2519
Score = 30.8 bits (68), Expect = 0.098
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 40 CREFMPSTNGSLTCAACGCHRNFHKREVEVVSESS 74
CR P T G C +C C R R++EV SS
Sbjct: 1255 CRSLEPPTKGCFNCISCSCFRA**SRKIEVSLISS 1359
>TC91406 similar to GP|4115922|gb|AAD03433.1| contains similarity to
ubiquitin carboxyl-terminal hydrolase family 2, partial
(27%)
Length = 1000
Score = 28.1 bits (61), Expect = 0.64
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +3
Query: 1 MRKRQVVVRRSEDPQRSVVKYGECQKNHAANVGGYAVDGCREFMPSTNGSLTCAACG 57
++++ + + D + EC KNH A VD C+ ST L C CG
Sbjct: 420 VKQKPYIEMKDSDGRPDEEVANECWKNHMARNDSLIVDECQGQYKST---LVCPECG 581
>TC85050
Length = 408
Score = 26.2 bits (56), Expect = 2.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -2
Query: 54 AACGCHRNFHKREVEVVSESS 74
+ C CH N HK E E+ + +
Sbjct: 206 STCSCHLNKHKHETEIANRKN 144
>TC91376 weakly similar to GP|17065054|gb|AAL32681.1 putative protein
{Arabidopsis thaliana}, partial (41%)
Length = 997
Score = 26.2 bits (56), Expect = 2.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 54 AACGCHRNFHKREVEVVSESSSP 76
AA C N H +E VV E+SSP
Sbjct: 772 AASSCGSNHHVKEEVVVEEASSP 840
>TC89669 homologue to GP|1237082|emb|CAA65540.1 ADP-glucose
pyrophosphorylase {Pisum sativum}, partial (66%)
Length = 1438
Score = 26.2 bits (56), Expect = 2.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 35 YAVDGCREFMPSTNGSLTCAACGCHRNFHK 64
+ +G RE PST G+ CGC N K
Sbjct: 408 FVSNGLREIYPSTQGNRC*YHCGCIANGRK 497
>BQ140050 weakly similar to PIR|T08413|T084 hypothetical protein F18B3.200 -
Arabidopsis thaliana, partial (37%)
Length = 544
Score = 26.2 bits (56), Expect = 2.4
Identities = 8/12 (66%), Positives = 9/12 (74%)
Frame = -3
Query: 51 LTCAACGCHRNF 62
L C CGCH+NF
Sbjct: 434 LICHTCGCHKNF 399
>TC90344 weakly similar to PIR|H86282|H86282 protein F10B6.34 [imported] -
Arabidopsis thaliana, partial (28%)
Length = 1170
Score = 25.4 bits (54), Expect = 4.1
Identities = 14/32 (43%), Positives = 18/32 (55%)
Frame = -1
Query: 18 VVKYGECQKNHAANVGGYAVDGCREFMPSTNG 49
VVK+GE + ANVGG VD R + + G
Sbjct: 411 VVKFGEEIVHPIANVGGIIVDRIRSELRNVAG 316
>TC80397 similar to PIR|H71404|H71404 hypothetical protein d13195c -
Arabidopsis thaliana, partial (16%)
Length = 1636
Score = 25.4 bits (54), Expect = 4.1
Identities = 8/18 (44%), Positives = 9/18 (49%)
Frame = -2
Query: 44 MPSTNGSLTCAACGCHRN 61
+P T C ACGC N
Sbjct: 432 IPRTKAGFNCVACGCSNN 379
>TC83601 weakly similar to GP|9454566|gb|AAF87889.1| scarecrow-like 3
protein {Arabidopsis thaliana}, partial (8%)
Length = 583
Score = 25.0 bits (53), Expect = 5.4
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Frame = +2
Query: 41 REFMPSTNGS------LTCAACGCHRNFHKREV--EVVSESSSPHSNG 80
RE ++GS + CA C + ++ E +S+ SSPH NG
Sbjct: 155 RELRYDSHGSNPMIPLIECAKCVASGSIKTADIGLEYISQISSPHGNG 298
>BQ147345 homologue to GP|22136958|gb| putative serine carboxypeptidase II
{Arabidopsis thaliana}, partial (2%)
Length = 704
Score = 25.0 bits (53), Expect = 5.4
Identities = 9/21 (42%), Positives = 11/21 (51%)
Frame = -1
Query: 47 TNGSLTCAACGCHRNFHKREV 67
T L+C C C RNFH +
Sbjct: 656 TG*DLSCIQCMCKRNFHMHPI 594
>TC86891 similar to PIR|D86244|D86244 protein Ser/Thr protein kinase homolog
[imported] - Arabidopsis thaliana, partial (55%)
Length = 2708
Score = 25.0 bits (53), Expect = 5.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 35 YAVDGCREFMPSTNGSLTCA 54
YA EF P +NG++TCA
Sbjct: 742 YAAGIVNEFGPESNGAVTCA 801
>BF647384 weakly similar to PIR|T49042|T49 hypothetical protein T5P19.60 -
Arabidopsis thaliana, partial (2%)
Length = 393
Score = 24.6 bits (52), Expect = 7.1
Identities = 13/42 (30%), Positives = 17/42 (39%), Gaps = 2/42 (4%)
Frame = +1
Query: 40 CREFMPSTNG--SLTCAACGCHRNFHKREVEVVSESSSPHSN 79
CR+ +P G C CG K+ S+SS P N
Sbjct: 97 CRQLLPEPQGYSVYKCGGCGTDLQAKKQSSVANSDSSVPEIN 222
>TC85408 homologue to PIR|S20869|S20869 tubulin beta-2 chain - garden pea
(fragment), complete
Length = 2121
Score = 24.6 bits (52), Expect = 7.1
Identities = 11/24 (45%), Positives = 14/24 (57%)
Frame = +1
Query: 17 SVVKYGECQKNHAANVGGYAVDGC 40
S V+ EC ++H ANVG D C
Sbjct: 1264 SAVQGFECSRDHTANVGFQEHDVC 1335
>TC91634 weakly similar to GP|21554410|gb|AAM63515.1 unknown {Arabidopsis
thaliana}, partial (48%)
Length = 748
Score = 24.6 bits (52), Expect = 7.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -2
Query: 42 EFMPSTNGSLTCAACGCHRNFHKREVEVVSESSSPH 77
E P + +CA+CG + HK+ +S+ +PH
Sbjct: 543 ETKPFSENVWSCASCGRKQQLHKQ----LSKEGNPH 448
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.316 0.129 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,023,675
Number of Sequences: 36976
Number of extensions: 41811
Number of successful extensions: 231
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of query: 81
length of database: 9,014,727
effective HSP length: 57
effective length of query: 24
effective length of database: 6,907,095
effective search space: 165770280
effective search space used: 165770280
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Medicago: description of AC139600.10