BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138465.9 - phase: 0
(521 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AI974280 weakly similar to GP|20279447|g putative TNP2-like tran... 124 1e-28
BF650639 weakly similar to GP|22748425|g putative transposon pro... 119 3e-27
BG452205 weakly similar to GP|1345502|emb TNP2 {Antirrhinum maju... 114 7e-26
TC87958 weakly similar to GP|20279447|gb|AAM18727.1 putative TNP... 114 1e-25
AW257182 weakly similar to GP|20279447|g putative TNP2-like tran... 96 4e-20
BG586318 similar to GP|6069576|dbj| transposon-like ORF {Brassic... 85 6e-17
TC91105 weakly similar to GP|3426036|gb|AAC32235.1| unknown prot... 34 0.12
BI308419 similar to GP|4140398|gb| sterol-C5(6)-desaturase {Nico... 31 1.3
TC85803 similar to GP|13785471|dbj|BAB43909. phosphoenolpyruvate... 30 2.3
BG582607 30 3.0
TC91186 similar to PIR|G86444|G86444 probable secretory carrier ... 30 3.0
TC79288 similar to GP|8052540|gb|AAF71804.1| F3F9.21 {Arabidopsi... 29 5.0
TC87452 similar to GP|11994287|dbj|BAB01470. gb|AAD31369.1~gene_... 28 6.6
TC82581 similar to GP|6729042|gb|AAF27038.1| unknown protein {Ar... 28 8.6
>AI974280 weakly similar to GP|20279447|g putative TNP2-like transposon
protein {Oryza sativa (japonica cultivar-group)},
partial (8%)
Length = 457
Score = 124 bits (310), Expect = 1e-28
Identities = 65/145 (44%), Positives = 89/145 (60%), Gaps = 1/145 (0%)
Frame = +1
Query: 169 YMFLAAVIPGPNNPKVVIDIYLQPLIDDLKRLWN-GVHTYDISRKQNFVMRAALMWTING 227
+ L+ +IPGP++PK ID+YL+PLID+LK LW G YD S KQ F AAL+WTI+
Sbjct: 7 HQMLSLLIPGPSSPKRNIDVYLEPLIDELKELWERGFEVYDASSKQLFEAHAALLWTISD 186
Query: 228 FPTYGMLSEWGTHGRLACPICMEDTDAFRLEHGGKTTWFGCTRRWLPDDHPFRRNKNAFM 287
P Y MLS W T G+LACP+C DT + L+H KT + RR+L H +R++K F
Sbjct: 187 LPAYTMLSGWSTSGKLACPVCSYDTCSMYLKHSRKTCYMS-HRRFLDPKHRWRKDKKGF- 360
Query: 288 KGETENRGPPPNLTSEQVWNKVKNK 312
G+ E R P L+ + K+ N+
Sbjct: 361 DGKKEIRVAPFPLSGSAILRKLGNR 435
>BF650639 weakly similar to GP|22748425|g putative transposon protein {Oryza
sativa (japonica cultivar-group)}, partial (6%)
Length = 568
Score = 119 bits (298), Expect = 3e-27
Identities = 60/160 (37%), Positives = 84/160 (52%)
Frame = +2
Query: 10 RIDCCVKGCMLFYDNEFGVKDGHLVECKFCQEPRYKGRKHSRSSKGKPVPRKALFYLPII 69
+ID C CML++ + H+ E + + + K V K L + P+I
Sbjct: 71 KIDACXNDCMLYWKDHKNDISCHVCGASRXIESTTEXGQIEENKKEHKVSTKILRHFPLI 250
Query: 70 PRLQRMYASMQTAEKMTWHSQNYERRNNSGELRHPSDGLAWKHFDQKHPNFALEPRNVRL 129
P LQR + +TA + WH ++ + G+LRHP+DG AWK F+ HP FA + RN+ L
Sbjct: 251 PXLQRXFMCSETATSLRWH---HDDXSKDGKLRHPADGQAWKDFNGHHPEFARDSRNIXL 421
Query: 130 GLCSDGFTPHIQGSGKPYSCWPIIVTPYNLPPDMCMSKPY 169
GL SDGF P + YS WP I+ PYN PP +CM Y
Sbjct: 422 GLASDGFNP-FRAMNLKYSAWPXILIPYNFPPWLCMKAXY 538
>BG452205 weakly similar to GP|1345502|emb TNP2 {Antirrhinum majus}, partial
(16%)
Length = 619
Score = 114 bits (286), Expect = 7e-26
Identities = 58/155 (37%), Positives = 82/155 (52%)
Frame = +1
Query: 4 LGLGGKRIDCCVKGCMLFYDNEFGVKDGHLVECKFCQEPRYKGRKHSRSSKGKPVPRKAL 63
LGL +ID C CML++ + H+ E + + + K V K L
Sbjct: 163 LGLDYSKIDACPNDCMLYWKDHKNDISCHVCGASRWIESTTESGQIEENKKEHKVSTKIL 342
Query: 64 FYLPIIPRLQRMYASMQTAEKMTWHSQNYERRNNSGELRHPSDGLAWKHFDQKHPNFALE 123
+ P+IPRLQR++ +TA + WH + + G+LRHP+DG AWK F+ HP FA +
Sbjct: 343 RHFPLIPRLQRLFMCSETATSLRWHHDDCSK---DGKLRHPADGQAWKDFNGHHPEFARD 513
Query: 124 PRNVRLGLCSDGFTPHIQGSGKPYSCWPIIVTPYN 158
RN+RLGL SDGF P + Y WP+ + PYN
Sbjct: 514 SRNIRLGLASDGFNP-FRAMNLKYXAWPVXLIPYN 615
>TC87958 weakly similar to GP|20279447|gb|AAM18727.1 putative TNP2-like
transposon protein {Oryza sativa (japonica
cultivar-group)}, partial (10%)
Length = 2433
Score = 114 bits (284), Expect = 1e-25
Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 1/155 (0%)
Frame = +1
Query: 342 DLLYWKDNLLRHNLDVMHIEKNFFDNIFNTVMNVKGKTKDNEKARKDIELYCRRKDLLLV 401
+L YW N L HNLDVMHIEKN FDNI T++++ GKTKD+ + R D+E RK+L
Sbjct: 1 ELPYWASNTLHHNLDVMHIEKNIFDNIIGTLLDIPGKTKDHVRGRYDLEEMGIRKNLHPR 180
Query: 402 EKSSGKFLKPCANYTLPIEETKDVYRWVKELKMSDGYSSNLARCADVENGRMHGMKSHDT 461
+ G+ + +++ EE +K K+ DG +SN++RC V ++ G KSHD
Sbjct: 181 DVGGGRVAIANSCFSMTSEEKSMFCGVLKGAKLPDGSASNISRCVKVSEKKICGYKSHDA 360
Query: 462 HIFMECLISTTFSALEPH-VLNPLIEMSQYFKNSC 495
H + L+ + P V PLI +S++F++ C
Sbjct: 361 HFMLHYLLQIPIRSTMPKAVAQPLIRLSRFFRSLC 465
>AW257182 weakly similar to GP|20279447|g putative TNP2-like transposon
protein {Oryza sativa (japonica cultivar-group)},
partial (6%)
Length = 387
Score = 95.5 bits (236), Expect = 4e-20
Identities = 47/94 (50%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Frame = +1
Query: 194 IDDLKRLW-NGVHTYDISRKQNFVMRAALMWTINGFPTYGMLSEWGTHGRLACPICMEDT 252
I++LK LW +GV TYD S+ Q F MRAAL+WTI+ FP Y MLS W T G+LACP C +T
Sbjct: 7 IEELKVLWESGVETYDASKNQMFRMRAALLWTISDFPAYAMLSGWSTKGKLACPCCNNNT 186
Query: 253 DAFRLEHGGKTTWFGCTRRWLPDDHPFRRNKNAF 286
+ L+H K + R +LP DH +R N+ +F
Sbjct: 187 SSTYLKHSRKMCYMD-HRTFLPMDHAWRENRKSF 285
>BG586318 similar to GP|6069576|dbj| transposon-like ORF {Brassica rapa},
partial (11%)
Length = 267
Score = 85.1 bits (209), Expect = 6e-17
Identities = 38/63 (60%), Positives = 48/63 (75%)
Frame = +3
Query: 346 WKDNLLRHNLDVMHIEKNFFDNIFNTVMNVKGKTKDNEKARKDIELYCRRKDLLLVEKSS 405
W+D+LLRHNLDVMHIEKNFFDN+ NT++NV+GKTKDN K+R D+ C R +L + E
Sbjct: 3 WEDHLLRHNLDVMHIEKNFFDNLMNTILNVQGKTKDNLKSRLDLVDICARSELHVDENGR 182
Query: 406 GKF 408
F
Sbjct: 183 APF 191
>TC91105 weakly similar to GP|3426036|gb|AAC32235.1| unknown protein
{Arabidopsis thaliana}, partial (6%)
Length = 698
Score = 34.3 bits (77), Expect = 0.12
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 267 GCTRRWLPDDHPFRRNKNAFMKGETENRGPPPN-LTSEQVWNKVKNKPKVQIVGGDAS 323
G + W P + N F+ R P PN L++ Q++++++ +P+ Q V G +S
Sbjct: 304 GMSASWYPTNSVEAMRSNVFLPQAPSTRNPSPNYLSTNQMYHQLQYQPQQQFVAGSSS 477
>BI308419 similar to GP|4140398|gb| sterol-C5(6)-desaturase {Nicotiana
tabacum}, partial (92%)
Length = 804
Score = 30.8 bits (68), Expect = 1.3
Identities = 17/37 (45%), Positives = 25/37 (66%), Gaps = 1/37 (2%)
Frame = +2
Query: 458 SHDTHIFMECLISTTFSALEPHVLNPL-IEMSQYFKN 493
+H T+IFM+ +IST L PH+L L I + +YFK+
Sbjct: 491 NHFTNIFMQHIISTINKILSPHLLVWLFILLMEYFKH 601
>TC85803 similar to GP|13785471|dbj|BAB43909. phosphoenolpyruvate
carboxykinase {Flaveria pringlei}, partial (95%)
Length = 2351
Score = 30.0 bits (66), Expect = 2.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 326 FGYGQKHNWTKRSIFWDLLYWKDN 349
F YGQ+ W S+ W L YWKDN
Sbjct: 1160 F*YGQR--WRCCSLLWTLRYWKDN 1225
>BG582607
Length = 754
Score = 29.6 bits (65), Expect = 3.0
Identities = 23/96 (23%), Positives = 41/96 (41%), Gaps = 4/96 (4%)
Frame = +3
Query: 419 IEETKDVYRWVKELKMSDGYSSNLARCADVENGRMHGMKSHDTHIFMECLISTTFSALEP 478
I E + +E+ +SD +S A SHD+ I ECL S +E
Sbjct: 450 ITEVVSTISFQEEIVLSDDSNSESAA------------SSHDSRIDEECLASLGAEKVED 593
Query: 479 HVLNPLIE----MSQYFKNSCSTTLREDDLIKMENE 510
+V++ ++E S+ N +R ++ ++ E E
Sbjct: 594 NVVSDIVEEKYCSSETILNGAEIGIRNEEHVEAETE 701
>TC91186 similar to PIR|G86444|G86444 probable secretory carrier membrane
protein [imported] - Arabidopsis thaliana, partial (56%)
Length = 592
Score = 29.6 bits (65), Expect = 3.0
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Frame = +3
Query: 291 TENRGPPPNLTSEQVWNKVKN----KPKVQIVGGDASKPFGYGQKH-----------NWT 335
T NR PN E+ N N K +V V AS+P G+GQ+H N
Sbjct: 75 TMNRNHDPNPFEEEEVNPFSNGTGSKSRVPSV---ASEPLGFGQRHDATVDIPLETSNGD 245
Query: 336 KRSIFWDLLYWKDNLLRHNLDVMHIE 361
+ +L W+ +L R D+ E
Sbjct: 246 SKKKSQELAVWEADLKRREKDIKRRE 323
>TC79288 similar to GP|8052540|gb|AAF71804.1| F3F9.21 {Arabidopsis thaliana},
partial (40%)
Length = 1665
Score = 28.9 bits (63), Expect = 5.0
Identities = 11/29 (37%), Positives = 15/29 (50%)
Frame = -1
Query: 90 QNYERRNNSGELRHPSDGLAWKHFDQKHP 118
Q YER N + HP+ +W F +K P
Sbjct: 1044 QTYERLNERKFVLHPTSSSSWSSFQKKEP 958
>TC87452 similar to GP|11994287|dbj|BAB01470.
gb|AAD31369.1~gene_id:F16J14.11~similar to unknown
protein {Arabidopsis thaliana}, partial (24%)
Length = 1615
Score = 28.5 bits (62), Expect = 6.6
Identities = 27/113 (23%), Positives = 45/113 (38%), Gaps = 11/113 (9%)
Frame = +1
Query: 371 TVMNVKGKTKDNEKARKDIELYCRRKDLLLVEKSSGKF-LKP-------CANYTLPIEET 422
T+ ++ + +R D + R L SSG F L P CAN T
Sbjct: 838 TISTFSSSSESSPLSRGDFSINTRNSHL---GSSSGSFSLSPVGKSSFGCANEIETSNST 1008
Query: 423 KDVYRW---VKELKMSDGYSSNLARCADVENGRMHGMKSHDTHIFMECLISTT 472
V++ E+++S+ Y+ ++ HG THIF C+I ++
Sbjct: 1009HGVFKGCLSASEMELSEDYTRVIS----------HGPNPRTTHIFDNCIIESS 1137
>TC82581 similar to GP|6729042|gb|AAF27038.1| unknown protein {Arabidopsis
thaliana}, partial (32%)
Length = 1258
Score = 28.1 bits (61), Expect = 8.6
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 357 VMHIEKNFFDNIFNTVMNVKGKTKDNEKARKDIELYCRRKDLLLVEKSSG 406
++H EKN +D + ++ +KGK E RKD Y + D + EK G
Sbjct: 365 IIHHEKNIYDQMMMMMIELKGK*GWCEVERKD--EYGEKSDEKVKEKERG 222
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.139 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,534,683
Number of Sequences: 36976
Number of extensions: 342684
Number of successful extensions: 1593
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1586
length of query: 521
length of database: 9,014,727
effective HSP length: 100
effective length of query: 421
effective length of database: 5,317,127
effective search space: 2238510467
effective search space used: 2238510467
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Medicago: description of AC138465.9