BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138464.11 - phase: 0
(292 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BE248167 similar to GP|10177443|dbj emb|CAB62340.1~gene_id:K9H21... 84 5e-17
BG587177 similar to GP|10177443|dbj emb|CAB62340.1~gene_id:K9H21... 68 5e-12
TC90042 similar to PIR|H86399|H86399 protein F17L21.26 [imported... 40 8e-04
BQ137194 32 0.38
TC89822 similar to GP|15529208|gb|AAK97698.1 At2g01710/T8O11.12 ... 31 0.49
TC83215 weakly similar to PIR|F96713|F96713 unknown protein T6L1... 30 1.1
AW694515 weakly similar to GP|10178181|dbj gene_id:MQN23.13~pir|... 28 3.2
TC90117 similar to GP|15294198|gb|AAK95276.1 At2g24860/F27C12.22... 28 5.4
BI270154 similar to GP|15810133|gb| unknown protein {Arabidopsis... 28 5.4
TC85940 similar to GP|20385508|gb|AAM21317.1 auxin-regulated pro... 27 9.3
BQ141737 homologue to GP|16415994|em hypothetical protein {Neuro... 27 9.3
>BE248167 similar to GP|10177443|dbj emb|CAB62340.1~gene_id:K9H21.5~similar
to unknown protein {Arabidopsis thaliana}, partial (25%)
Length = 376
Score = 84.3 bits (207), Expect = 5e-17
Identities = 46/97 (47%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Frame = +3
Query: 197 PCFITDGNGKVLRVNDAYKKMVVNEESEEVEVVIWLKVKQSVAWCYSYPAFTCGVRL-QY 255
P FI+DG G+V N AY++M+ + + + +K+ V YP+FTC VR+ Q+
Sbjct: 3 PGFISDGYGRVTWTNGAYREMM-----GDGVIALVMKINGVVL----YPSFTCRVRVVQF 155
Query: 256 TWRNEKCLKMVPCDVWRLECGGFAWRLDVKAALSLGL 292
E+ L +PCDVWR++CGGFAWRLDVKAALSL L
Sbjct: 156 ACGRERNLFTLPCDVWRMDCGGFAWRLDVKAALSLRL 266
>BG587177 similar to GP|10177443|dbj emb|CAB62340.1~gene_id:K9H21.5~similar
to unknown protein {Arabidopsis thaliana}, partial (17%)
Length = 825
Score = 67.8 bits (164), Expect = 5e-12
Identities = 31/49 (63%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Frame = +1
Query: 243 SYPAFTCGVRLQYTWRN-EKCLKMVPCDVWRLECGGFAWRLDVKAALSL 290
+Y AFTC V LQ+T ++ E+C VPCDVWR++ GGFAW+LDVKAAL L
Sbjct: 10 TYTAFTCRVTLQFTCQDRERCSVTVPCDVWRMDDGGFAWKLDVKAALCL 156
>TC90042 similar to PIR|H86399|H86399 protein F17L21.26 [imported] -
Arabidopsis thaliana, partial (11%)
Length = 1117
Score = 40.4 bits (93), Expect = 8e-04
Identities = 65/269 (24%), Positives = 97/269 (35%), Gaps = 68/269 (25%)
Frame = +3
Query: 28 IMLRFRPIAPKPVT---GEQTPANQSTTASLPGKRTKRKYVR-------------IRRNN 71
IM R+RPIAPKP T T S++ SL K + Y+R +R
Sbjct: 198 IMSRYRPIAPKPETCSSNNSTSDGSSSSNSLSQKIKQSPYLRNLWPQLQARPTRTRKRGR 377
Query: 72 GYIKKNSCKK---------------SSPEEEIVVQHS--------------------NSN 96
I S K +SP + + +Q + N N
Sbjct: 378 APISLPSSLKRQKTHVLGFCQPLHVTSPIKNLTLQGNFVPPPSLPQLPLPNHGVGVLNCN 557
Query: 97 DEMKRNLAVVTLQLMPEKAAATSN----------VDLNLNLNLTVENIQILDNLNRSQNN 146
N +VTL L+P + +N +DLN N VE Q D L + Q
Sbjct: 558 KNSTTNPNLVTLPLLPCSPNSPNNNNALKFELEVIDLN---NTKVEVPQERDLLQQLQ-K 725
Query: 147 PDLETMNAGKFLDLLP------AVEKAVVESWITVESVTGMCMVVEKV-KNIETDTCPCF 199
P T N + P + + + VT E++ + +E++ P
Sbjct: 726 PASSTNNVINVISPQPIRPIGSCINVGCISEVSAIPCVTKTPKKPEELEQEVESEELPAV 905
Query: 200 ITDGNGKVLRVNDAYKKMVVNEESEEVEV 228
I+D N +V N AYK+MV E +E+
Sbjct: 906 ISDSNNRVRMANSAYKEMVGQPECPWLEI 992
>BQ137194
Length = 1030
Score = 31.6 bits (70), Expect = 0.38
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +1
Query: 38 KPVTGEQTPANQSTTASLPGKRTKRKYVRIRRNNGYIKKNSCKKSSPEEEIVVQHSNS 95
+ VTGEQT +++ ++L KR +R+ RR I+ N+ ++ ++ H S
Sbjct: 553 RDVTGEQTSGRRASDSALHAKRGRRRDKETRRRERRIRWNTAEEERKRDQHNKTHKTS 726
>TC89822 similar to GP|15529208|gb|AAK97698.1 At2g01710/T8O11.12
{Arabidopsis thaliana}, partial (35%)
Length = 539
Score = 31.2 bits (69), Expect = 0.49
Identities = 18/55 (32%), Positives = 30/55 (53%), Gaps = 4/55 (7%)
Frame = +3
Query: 46 PANQSTTASLPGKRTKRKYVRIRRNNGYIK--KNSCKK--SSPEEEIVVQHSNSN 96
P NQ+T +LP ++ + + NGY+K KNSC+K S +E++ + N
Sbjct: 3 PTNQTTLLTLPKEKNPK*TQAKPKQNGYLKSEKNSCRKEISKVQEKLRIWFKKPN 167
>TC83215 weakly similar to PIR|F96713|F96713 unknown protein T6L1.9
[imported] - Arabidopsis thaliana, partial (21%)
Length = 731
Score = 30.0 bits (66), Expect = 1.1
Identities = 22/81 (27%), Positives = 39/81 (47%)
Frame = +2
Query: 97 DEMKRNLAVVTLQLMPEKAAATSNVDLNLNLNLTVENIQILDNLNRSQNNPDLETMNAGK 156
+E+K N+ ++ QL + AA N N+N++ EN ++LD L + E N
Sbjct: 245 NELKLNIQILIEQLKAKDAALEKNGRCNVNVDDIQENTEVLD-LREKMKILEEEQKNFEV 421
Query: 157 FLDLLPAVEKAVVESWITVES 177
++ L +A E I +E+
Sbjct: 422 QINSLSEENEACHEQLIEIEN 484
>AW694515 weakly similar to GP|10178181|dbj
gene_id:MQN23.13~pir||T07721~strong similarity to
unknown protein {Arabidopsis thaliana}, partial (8%)
Length = 667
Score = 28.5 bits (62), Expect = 3.2
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +1
Query: 102 NLAVVTLQLMPEKAAATSNVDLNLNLNLTVENIQILDNLNRSQNNPDLETMNA 154
NL L+ + +N +L NL +N+ + +N+N++QNN L+ M++
Sbjct: 445 NLKSSILKWTQTQTKMQTNPNLTTTENLGTQNLCLQNNMNQNQNNLVLKLMSS 603
>TC90117 similar to GP|15294198|gb|AAK95276.1 At2g24860/F27C12.22
{Arabidopsis thaliana}, partial (64%)
Length = 711
Score = 27.7 bits (60), Expect = 5.4
Identities = 19/49 (38%), Positives = 25/49 (50%), Gaps = 3/49 (6%)
Frame = -3
Query: 81 KSSPEEEIVVQHSNSNDEM---KRNLAVVTLQLMPEKAAATSNVDLNLN 126
KS EEE SN E KR + +VT L+P+K A VDL ++
Sbjct: 268 KSEDEEE------ESNMETLTHKREIRLVTKLLLPQKTTAIGGVDLGMS 140
>BI270154 similar to GP|15810133|gb| unknown protein {Arabidopsis thaliana},
partial (2%)
Length = 637
Score = 27.7 bits (60), Expect = 5.4
Identities = 23/90 (25%), Positives = 38/90 (41%), Gaps = 17/90 (18%)
Frame = +1
Query: 18 LNNDNNIFNGIMLRFR---------------PIAPKP-VTGEQTPAN-QSTTASLPGKRT 60
+N +NN +G+M R P +PK ++ + N QST SLP K +
Sbjct: 250 INGENNTNSGVMAETRSPRLQKKFGLERRSPPTSPKSDISSNRRQQNRQSTDLSLPSKTS 429
Query: 61 KRKYVRIRRNNGYIKKNSCKKSSPEEEIVV 90
++K ++ N + K S E +V
Sbjct: 430 RQKLSPLKERNDQNAEQDLSKESFMVETMV 519
>TC85940 similar to GP|20385508|gb|AAM21317.1 auxin-regulated protein
{Populus tremula x Populus tremuloides}, partial (73%)
Length = 1595
Score = 26.9 bits (58), Expect = 9.3
Identities = 37/152 (24%), Positives = 64/152 (41%), Gaps = 6/152 (3%)
Frame = +3
Query: 118 TSNVDLNLNLNLTVENIQILDNLNRSQNNPDLETMNAGKFLDLLPAVEKAVVESWITVES 177
T+NVDL LNL+ ++ + N +T + P KA V W V S
Sbjct: 276 TANVDLKLNLSPINDSASSSSTIASVAENKGKDTTTSATVSP--PPRAKAQVVGWPPVRS 449
Query: 178 VTGMCMVVEKVKNIETDTCPCFITDGNGKVLRVNDAYKKMVVNEES--EEVEVVIWLKVK 235
+ V + N ET+ I+ G G N A+ K+ ++ +V++ ++ +
Sbjct: 450 FRKNIVNVHQKSNSETEVDKS-ISGGGG-----NGAFVKVSMDGAPYLRKVDLKLYKSYQ 611
Query: 236 Q-SVAWCYSYPAFT---CGVRLQYTWRNEKCL 263
+ S A + +FT CG ++ + NE L
Sbjct: 612 ELSDALAKMFSSFTIDNCGSQVTKDFMNESKL 707
>BQ141737 homologue to GP|16415994|em hypothetical protein {Neurospora
crassa}, partial (1%)
Length = 1295
Score = 26.9 bits (58), Expect = 9.3
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = +1
Query: 32 FRPIAPKPVTGEQTPANQSTTASLPGKRTKRKYVRIRRNN 71
F P P P T P+ +PG R YV R N
Sbjct: 4 FSPPPPPPATPPPPPSEAPAVGGVPGGRPPPAYVATSRRN 123
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.317 0.132 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,036,368
Number of Sequences: 36976
Number of extensions: 143071
Number of successful extensions: 829
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of query: 292
length of database: 9,014,727
effective HSP length: 95
effective length of query: 197
effective length of database: 5,502,007
effective search space: 1083895379
effective search space used: 1083895379
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC138464.11