TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138453.6 - phase: 0 /pseudo
         (667 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2...    37  0.019
BI262917 weakly similar to GP|19920130|g Putative retroelement {...    33  0.46
BQ135588                                                               30  2.3
TC89416 homologue to PIR|T49904|T49904 hypothetical protein T24H...    28  8.7

>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
           Arabidopsis thaliana, partial (11%)
          Length = 732

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
 Frame = +2

Query: 529 EISYANRSMQRKYSKSCTWKIAKALQLQ*IKRRNSAKMMELEKLLKAKIEA*LVA*CI*K 588
           E  +A  +M     K   W+    L +  +   +  KM  + + +   I   LV *C *+
Sbjct: 26  EFIFAKGNM*LTC*KGLAWRKVICLGILLLLGAS*LKMKMV*RWMLQSISKLLVV*CT*Q 205

Query: 589 PLDKI*CMF*VCFQGLCIVLVKYLINLSKES*DTSKGHLIMALSIH--DVQSFNLLAILI 646
           P D I*CM *V      IV + Y    SKE  D S   LI  L I   +V+S+    I+I
Sbjct: 206 PQDLI*CMC*V*LADS*IVQLSYTCMQSKEYSDISMAQLIWGLCIRGMEVRSWRHTQIVI 385

Query: 647 V 647
           +
Sbjct: 386 M 388


>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
           sativa} [Oryza sativa (japonica cultivar-group)],
           partial (8%)
          Length = 426

 Score = 32.7 bits (73), Expect = 0.46
 Identities = 18/59 (30%), Positives = 28/59 (46%)
 Frame = +1

Query: 113 QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQKCNILLNMLPSRVMHKKTPFETW 171
           QQNGV ER  +  L R +       + +    + ++    ++N  PS V+  KTP E W
Sbjct: 91  QQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPMEMW 267


>BQ135588 
          Length = 745

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 122 KKEALWRWKDACYMKKIFQKSCGQRLQKC 150
           KK+  W W+DAC + K+ +  CG R   C
Sbjct: 134 KKKTEW-WEDACVLTKLVRVQCGVRNSSC 51


>TC89416 homologue to PIR|T49904|T49904 hypothetical protein T24H18.70 -
           Arabidopsis thaliana, partial (4%)
          Length = 759

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 16/53 (30%), Positives = 26/53 (48%)
 Frame = -1

Query: 511 SLV*CLIFLSWR*TNIVMEISYANRSMQRKYSKSCTWKIAKALQLQ*IKRRNS 563
           S++  LIF++W    +++     NR  + K S S  W  A A+ L *   + S
Sbjct: 306 SILMWLIFITWCENRVILSRELRNRGRRWKSSFSWAWTWAWAISLS*CSMKGS 148


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.367    0.164    0.589 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,055,215
Number of Sequences: 36976
Number of extensions: 277081
Number of successful extensions: 4123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 163
Number of HSP's that attempted gapping in prelim test: 2828
Number of HSP's gapped (non-prelim): 1515
length of query: 667
length of database: 9,014,727
effective HSP length: 102
effective length of query: 565
effective length of database: 5,243,175
effective search space: 2962393875
effective search space used: 2962393875
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 62 (28.5 bits)